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Volumn 22, Issue 3, 2003, Pages 651-656

In vivo evidence for the prokaryotic model of extended codon-anticodon interaction in translation initiation

Author keywords

Anticodon; Chlamydomonas; Chloroplast; Initiator tRNA

Indexed keywords

AMINOACYLATION; ANTICODON; ARTICLE; BINDING SITE; CHLOROPLAST; CODON USAGE; ESCHERICHIA COLI; MODEL; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; PROTEIN SYNTHESIS; STRAIN DIFFERENCE; TRANSLATION INITIATION;

EID: 0037415683     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/cdg072     Document Type: Article
Times cited : (24)

References (41)
  • 1
    • 0029347009 scopus 로고
    • The initiation codon determines the efficiency but not the site of translation initiation in Chlamydomonas chloroplasts
    • Chen,X., Kindle,K.L. and Stern,D.B. (1995) The initiation codon determines the efficiency but not the site of translation initiation in Chlamydomonas chloroplasts. Plant Cell, 7, 1295-1305.
    • (1995) Plant Cell , vol.7 , pp. 1295-1305
    • Chen, X.1    Kindle, K.L.2    Stern, D.B.3
  • 2
    • 0002381168 scopus 로고
    • Frameshift suppression
    • Hill,W., Dahlberg,A., Garrett,P., Moore,P., Schlessinger,D. and Warner,J. (eds), American Society for Microbiology, Washington, DC
    • Culbertson,M., Leeds,P., Sandbaken,M. and Wilson,P. (1990) Frameshift suppression. In Hill,W., Dahlberg,A., Garrett,P., Moore,P., Schlessinger,D. and Warner,J. (eds), The Ribosome: Structure, Function and Evolution. American Society for Microbiology, Washington, DC, pp. 559-570.
    • (1990) The Ribosome: Structure, Function and Evolution , pp. 559-570
    • Culbertson, M.1    Leeds, P.2    Sandbaken, M.3    Wilson, P.4
  • 3
    • 0032738453 scopus 로고    scopus 로고
    • A symbolic-numeric approach to find patterns in genomes. Application to the translation initiation sites of E.coli
    • Delamarche,C., Guerdoux-Jamet,P., Gras,R. and Nicolas,J. (1999) A symbolic-numeric approach to find patterns in genomes. Application to the translation initiation sites of E.coli. Biochimie, 81, 1065-1072.
    • (1999) Biochimie. , vol.81 , pp. 1065-1072
    • Delamarche, C.1    Guerdoux-Jamet, P.2    Gras, R.3    Nicolas, J.4
  • 4
    • 0031910348 scopus 로고    scopus 로고
    • In vivo evidence for 5′→3′ exoribonuclease degradation of an unstable chloroplast mRNA
    • Drager,R.G., Girard-Bascou,J., Choquet,Y., Kindle,K.L. and Stern,D.B. (1998) In vivo evidence for 5′→3′ exoribonuclease degradation of an unstable chloroplast mRNA. Plant J., 13, 85-96.
    • (1998) Plant J. , vol.13 , pp. 85-96
    • Drager, R.G.1    Girard-Bascou, J.2    Choquet, Y.3    Kindle, K.L.4    Stern, D.B.5
  • 5
    • 0000545299 scopus 로고
    • Evidence for nuclear control of the expression of the atpA and atpB chloroplast genes in Chlamydomonas
    • Drapier,D., Girard-Bascou,J. and Wollman,F.-A. (1992) Evidence for nuclear control of the expression of the atpA and atpB chloroplast genes in Chlamydomonas. Plant Cell, 4, 283-295.
    • (1992) Plant Cell , vol.4 , pp. 283-295
    • Drapier, D.1    Girard-Bascou, J.2    Wollman, F.-A.3
  • 6
    • 0025710571 scopus 로고
    • Light-based detection of biomolecules
    • Durant,I. (1990) Light-based detection of biomolecules. Nature, 346, 297-298.
    • (1990) Nature , vol.346 , pp. 297-298
    • Durant, I.1
  • 7
    • 0019879644 scopus 로고
    • Recognition by initiator transfer ribonucleic acid of a uridine 5′ adjacent to the AUG codon: Different conformational states of formylatable methionine-accepting transfer ribonucleic acid at the ribosomal peptidyl site
    • Eckhardt,H. and Luhrmann,R. (1981) Recognition by initiator transfer ribonucleic acid of a uridine 5′ adjacent to the AUG codon: different conformational states of formylatable methionine-accepting transfer ribonucleic acid at the ribosomal peptidyl site. Biochemistry, 20, 2075-2080.
    • (1981) Biochemistry , vol.20 , pp. 2075-2080
    • Eckhardt, H.1    Luhrmann, R.2
  • 8
    • 0034754764 scopus 로고    scopus 로고
    • A role for initiation codon context in chloroplast translation
    • Esposito,D., Hicks,A.J. and Stern,D.B. (2001) A role for initiation codon context in chloroplast translation. Plant Cell, 13, 2373-2384.
    • (2001) Plant Cell , vol.13 , pp. 2373-2384
    • Esposito, D.1    Hicks, A.J.2    Stern, D.B.3
  • 9
    • 0036184369 scopus 로고    scopus 로고
    • Hyaloraphidium curvatum: A linear mitochondrial genome, tRNA editing and an evolutionary link to lower fungi
    • Forget,L., Ustinova,J., Wang,Z., Huss,V.A. and Franz Lang,B. (2002) Hyaloraphidium curvatum: a linear mitochondrial genome, tRNA editing and an evolutionary link to lower fungi. Mol. Biol. Evol., 19, 310-319.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 310-319
    • Forget, L.1    Ustinova, J.2    Wang, Z.3    Huss, V.A.4    Franz Lang, B.5
  • 10
    • 0017865555 scopus 로고
    • Nucleotides contiguous to AUG affect translational initiation
    • Ganoza,M.C., Fraser,A.R. and Neilson,T. (1978) Nucleotides contiguous to AUG affect translational initiation. Biochemistry, 17, 2769-2775.
    • (1978) Biochemistry , vol.17 , pp. 2769-2775
    • Ganoza, M.C.1    Fraser, A.R.2    Neilson, T.3
  • 12
    • 0022374873 scopus 로고
    • Initiator tRNA may recognize more than the initiation codon in mRNA: A model for translational initiation
    • Ganoza,M.C., Marliere,P., Kofoid,E.C. and Louis,B.G. (1985) Initiator tRNA may recognize more than the initiation codon in mRNA: a model for translational initiation. Proc. Natl Acad. Sci. USA, 82, 4587-4591.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 4587-4591
    • Ganoza, M.C.1    Marliere, P.2    Kofoid, E.C.3    Louis, B.G.4
  • 13
    • 0025766849 scopus 로고
    • Transgenic expression of aminoglycoside adenine transferase in the chloroplast: A selectable marker for site-directed transformation of Chlamydomonas
    • Goldschmidt-Clermont,M. (1991) Transgenic expression of aminoglycoside adenine transferase in the chloroplast: a selectable marker for site-directed transformation of Chlamydomonas. Nucleic Acids Res., 19, 4083-4090.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4083-4090
    • Goldschmidt-Clermont, M.1
  • 14
    • 0025144939 scopus 로고
    • RNA primary sequence or secondary structure in the translational initiation region controls expression of two variant interferon-β genes in Escherichia coli
    • Gross,G., Mielke,C., Hollatz, I., Blocker,H. and Frank,R. (1990) RNA primary sequence or secondary structure in the translational initiation region controls expression of two variant interferon-β genes in Escherichia coli. J. Biol. Chem., 265, 17627-17636.
    • (1990) J. Biol. Chem. , vol.265 , pp. 17627-17636
    • Gross, G.1    Mielke, C.2    Hollatz, I.3    Blocker, H.4    Frank, R.5
  • 15
    • 0025365804 scopus 로고
    • Initiation of mRNA translation in prokaryotes
    • Gualerzi,C.O. and Pon,C.L. (1990) Initiation of mRNA translation in prokaryotes. Biochemistry, 29, 5881-5889.
    • (1990) Biochemistry , vol.29 , pp. 5881-5889
    • Gualerzi, C.O.1    Pon, C.L.2
  • 18
    • 0023373136 scopus 로고
    • Specialized ribosome system: Preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli
    • Hui,A. and de Boer,H.A. (1987) Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. Proc. Natl Acad. Sci. USA, 84, 4762-4766.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4762-4766
    • Hui, A.1    De Boer, H.A.2
  • 19
    • 0021403550 scopus 로고
    • Mutagenesis of the three bases preceding the start codon of the β-galactosidase mRNA and its effect on translation in Escherichia coli
    • Hui,A., Hayflick,J., Dinkelspiel,K. and de Boer,H.A. (1984) Mutagenesis of the three bases preceding the start codon of the β-galactosidase mRNA and its effect on translation in Escherichia coli. EMBO J., 3, 623-629.
    • (1984) EMBO J. , vol.3 , pp. 623-629
    • Hui, A.1    Hayflick, J.2    Dinkelspiel, K.3    De Boer, H.A.4
  • 20
    • 0028094403 scopus 로고
    • Footprinting mRNA-ribosome complexes with chemical probes
    • Hüttenhofer,A. and Noller,H.F. (1994) Footprinting mRNA-ribosome complexes with chemical probes. EMBO J., 13, 3892-3901.
    • (1994) EMBO J. , vol.13 , pp. 3892-3901
    • Hüttenhofer, A.1    Noller, H.F.2
  • 21
    • 0026035050 scopus 로고
    • Engineering the chloroplast genome: Techniques and capabilities for chloroplast transformation in Chlamydomonas reinhardtii
    • Kindle,K.L., Richards,K.L. and Stern,D.B. (1991) Engineering the chloroplast genome: techniques and capabilities for chloroplast transformation in Chlamydomonas reinhardtii. Proc. Natl Acad. Sci. USA, 88, 1721-1725.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 1721-1725
    • Kindle, K.L.1    Richards, K.L.2    Stern, D.B.3
  • 22
    • 2642699794 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel,T.A. (1985) Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl Acad. Sci. USA., 82, 488-492.
    • (1985) Proc. Natl. Acad. Sci. USA. , vol.82 , pp. 488-492
    • Kunkel, T.A.1
  • 23
    • 0028178516 scopus 로고
    • 6/f complexes: An approach using genetic transformation of the green alga Chlamydomonas reinhardtii
    • 6/f complexes: an approach using genetic transformation of the green alga Chlamydomonas reinhardtii. EMBO J., 13, 1019-1027.
    • (1994) EMBO J. , vol.13 , pp. 1019-1027
    • Kuras, R.1    Wollman, F.-A.2
  • 24
    • 0035970290 scopus 로고    scopus 로고
    • Expanding the genetic code: Selection of efficient suppressors of four-base codons and identification of 'shifty' four-base codons with a library approach in Escherichia coli
    • Magliery,T.J., Anderson,J.C. and Schultz,P.G. (2001) Expanding the genetic code: selection of efficient suppressors of four-base codons and identification of 'shifty' four-base codons with a library approach in Escherichia coli. J. Mol. Biol., 307, 755-769.
    • (2001) J. Mol. Biol. , vol.307 , pp. 755-769
    • Magliery, T.J.1    Anderson, J.C.2    Schultz, P.G.3
  • 25
    • 0036845754 scopus 로고    scopus 로고
    • The Chlamydomonas reinhardtii plastid chromosome: Islands of genes in a sea of repeats
    • Maul,J.E., Lilly,J.W., Cui,L., de Pamphilis,C.W., Harris,E.H. and Stern,D.B. (2002) The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell, 14, 1-21.
    • (2002) Plant Cell , vol.14 , pp. 1-21
    • Maul, J.E.1    Lilly, J.W.2    Cui, L.3    De Pamphilis, C.W.4    Harris, E.H.5    Stern, D.B.6
  • 26
    • 0023292452 scopus 로고
    • Expression of the nuclear gene encoding oxygen-evolving enhancer protein 2 is required for high levels of photosynthetic oxygen evolution in Chlamydomonas reinhardtii
    • Mayfield,S., Rahire,M., Frank,G., Zuber,H. and Rochaix,J.-D. (1987) Expression of the nuclear gene encoding oxygen-evolving enhancer protein 2 is required for high levels of photosynthetic oxygen evolution in Chlamydomonas reinhardtii. Proc. Natl Acad. Sci. USA, 84, 749-753.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 749-753
    • Mayfield, S.1    Rahire, M.2    Frank, G.3    Zuber, H.4    Rochaix, J.-D.5
  • 27
    • 0028173550 scopus 로고
    • Prokaryotic translation: The interactive pathway leading to initiation
    • McCarthy,J.E.G. and Brimacombe,R. (1994) Prokaryotic translation: the interactive pathway leading to initiation. Trends Genet., 10, 402-407.
    • (1994) Trends Genet. , vol.10 , pp. 402-407
    • McCarthy, J.E.G.1    Brimacombe, R.2
  • 28
    • 0027498441 scopus 로고
    • Critical role of the acceptor stem of tRNAs(Met) in their aminoacylation by Escherichia coli methionyl-tRNA synthetase
    • Meinnel,T., Mechulam,Y., Lazennec,C., Blanquet,S. and Fayat,G. (1993) Critical role of the acceptor stem of tRNAs(Met) in their aminoacylation by Escherichia coli methionyl-tRNA synthetase. J. Mol. Biol., 229, 26-36.
    • (1993) J. Mol. Biol. , vol.229 , pp. 26-36
    • Meinnel, T.1    Mechulam, Y.2    Lazennec, C.3    Blanquet, S.4    Fayat, G.5
  • 29
    • 0035026057 scopus 로고    scopus 로고
    • Evidence against an interaction between the mRNA downstream box and 16S rRNA in translation initiation
    • Moll,I., Huber,M., Grill,S., Sairafi,P., Mueller,F., Brimacombe,R., Londei,P. and Blasi,U. (2001) Evidence against an interaction between the mRNA downstream box and 16S rRNA in translation initiation. J. Bacteriol., 183, 3499-3505.
    • (2001) J. Bacteriol. , vol.183 , pp. 3499-3505
    • Moll, I.1    Huber, M.2    Grill, S.3    Sairafi, P.4    Mueller, F.5    Brimacombe, R.6    Londei, P.7    Blasi, U.8
  • 30
    • 0025733469 scopus 로고
    • Restructuring the translation initiation region of the human parathyroid hormone gene for improved expression in Escherichia coli
    • Morelle,G., Frank,R. and Meyerhans,A. (1991) Restructuring the translation initiation region of the human parathyroid hormone gene for improved expression in Escherichia coli. Biochim. Biophys. Acta, 1089, 320-324.
    • (1991) Biochim. Biophys. Acta , vol.1089 , pp. 320-324
    • Morelle, G.1    Frank, R.2    Meyerhans, A.3
  • 31
    • 0019494798 scopus 로고
    • A nuclear mutant of Chlamydomonas reinhardtii defective in photosynthetic photophosphorylation. Characterization of the algal coupling factor ATPase
    • Piccioni,R.G., Bennoun,P. and Chua,N.H. (1981) A nuclear mutant of Chlamydomonas reinhardtii defective in photosynthetic photophosphorylation. Characterization of the algal coupling factor ATPase. Eur. J. Biochem., 117, 93-102.
    • (1981) Eur. J. Biochem. , vol.117 , pp. 93-102
    • Piccioni, R.G.1    Bennoun, P.2    Chua, N.H.3
  • 32
    • 0032015813 scopus 로고    scopus 로고
    • A new model for phenotypic suppression of frameshift mutations by mutant tRNAs
    • Qian,Q., Li,J.N., Zhao,H., Hagervall,T.G., Farabaugh,P.J. and Bjork,G.R. (1998) A new model for phenotypic suppression of frameshift mutations by mutant tRNAs. Mol. Cell, 1, 471-482.
    • (1998) Mol. Cell , vol.1 , pp. 471-482
    • Qian, Q.1    Li, J.N.2    Zhao, H.3    Hagervall, T.G.4    Farabaugh, P.J.5    Bjork, G.R.6
  • 33
    • 0003404894 scopus 로고
    • Mutations in nine chloroplast loci of Chlamydomonas affecting photosynthetic functions
    • Shepherd,H.S., Boynton,J.E. and Gillham,N.W. (1979) Mutations in nine chloroplast loci of Chlamydomonas affecting photosynthetic functions. Proc. Natl Acad. Sci. USA, 76, 1353-1357.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 1353-1357
    • Shepherd, H.S.1    Boynton, J.E.2    Gillham, N.W.3
  • 34
    • 0016154301 scopus 로고
    • The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
    • Shine,J. and Dalgarno,L. (1974) The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Natl Acad. Sci. USA, 71, 1342-1346.
    • (1974) Proc. Natl. Acad. Sci. USA , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 36
    • 0035941484 scopus 로고    scopus 로고
    • Codon bias at the 3′-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli
    • Stenstrom,C.M., Jin,H., Major,L.L., Tate,W.P. and Isaksson,L.A. (2001) Codon bias at the 3′-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli. Gene, 263, 273-284.
    • (2001) Gene , vol.263 , pp. 273-284
    • Stenstrom, C.M.1    Jin, H.2    Major, L.L.3    Tate, W.P.4    Isaksson, L.A.5
  • 37
    • 0026116211 scopus 로고
    • A 3′ stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo
    • Stern,D.B., Radwanski,E.R. and Kindle,K.L. (1991) A 3′ stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo. Plant Cell, 3, 285-297.
    • (1991) Plant Cell , vol.3 , pp. 285-297
    • Stern, D.B.1    Radwanski, E.R.2    Kindle, K.L.3
  • 38
    • 0032411339 scopus 로고    scopus 로고
    • Evolution and mechanism of translation in chloroplasts
    • Sugiura,M., Hirose,T. and Sugita,M. (1998) Evolution and mechanism of translation in chloroplasts. Annu. Rev. Genet., 32, 437-459.
    • (1998) Annu. Rev. Genet. , vol.32 , pp. 437-459
    • Sugiura, M.1    Hirose, T.2    Sugita, M.3
  • 39
    • 0026350896 scopus 로고
    • Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase
    • Varshney,U., Lee,C. and RajBandhary,U. (1991) Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase. J. Biol. Chem., 266, 24712-24718.
    • (1991) J. Biol. Chem. , vol.266 , pp. 24712-24718
    • Varshney, U.1    Lee, C.2    RajBandhary, U.3
  • 40
    • 0037100663 scopus 로고    scopus 로고
    • A comparative genomic method for computational identification of prokaryotic translation initiation sites
    • Walker,M., Pavlovic,V. and Kasif,S. (2002) A comparative genomic method for computational identification of prokaryotic translation initiation sites. Nucleic Acids Res., 30, 3181-3191.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3181-3191
    • Walker, M.1    Pavlovic, V.2    Kasif, S.3
  • 41
    • 0029835702 scopus 로고    scopus 로고
    • Ribosome-initiator tRNA complex as an intermediate in translation initiation in Escherichia coli revealed by use of mutant initiator tRNAs and specialized ribosomes
    • Wu,X.Q., Iyengar,P. and RajBhandary,U.L. (1996) Ribosome-initiator tRNA complex as an intermediate in translation initiation in Escherichia coli revealed by use of mutant initiator tRNAs and specialized ribosomes. EMBO J., 15, 4734-4739.
    • (1996) EMBO J. , vol.15 , pp. 4734-4739
    • Wu, X.Q.1    Iyengar, P.2    RajBhandary, U.L.3


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