The translational apparatus of Chlamydomonas reinhardtii chloroplast

Photosynthesis Research

Volumn 82, Issue 3, 2004, Pages 315-325

  Beligni, María Verónica ^a   Yamaguchi, Kenichi ^b   Mayfield, Stephen P ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b NAGASAKI UNIVERSITY   (Japan)

Author keywords

5 UTR; chloroplast translation; mRNA binding proteins; ribosomal proteins; trans acting factors; translation factors

Indexed keywords

ALGAE; BACTERIA (MICROORGANISMS); CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; EUKARYOTA;

EID: 11144271074     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-004-2440-5     Document Type: Review

References (43)

1. Allison LA (2000) The role of sigma factors in plastid transcription. Biochimie 82: 537-548
2. Aoki H, Dekany K, Adams SL and Ganoza MC (1997) The gene encoding the elongation factor P protein is essential for viability and is required for protein synthesis. J Biol Chem 272: 32254-32259
3. Auchincloss AH, Zerges W, Perron K, Girard-Bascou J and Rochaix JD (2002) Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii. J Cell Biol 157: 953-962
4. Barkan A and Goldschmidt-Clermont M (2000) Participation of nuclear genes in chloroplast gene expression. Biochimie 82: 559-572
5. Boudreau E, Nickelsen J, Lemaire SD, Ossenbuhl F and Rochaix JD (2000) The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability. EMBO J 19: 3366-3376
6. Breidenbach E, Leu S, Michaels A and Boschetti A (1990) Synthesis of EF-Tu and distribution of its mRNA between stroma and thylakoids during the cell cycle of Chlamydomonas reinhardtii. Biochim Biophys Acta 1048: 209-216
7. Breitenberger CA and Spremulli LL (1980) Purification of Euglena gracilis chloroplast elongation factor G and comparison with other prokaryotic and eukaryotic translocases. J Biol Chem 255: 9814-9820
8. Bubunenko MG and Subramanian AR (1994) Recognition of novel and divergent higher plant chloroplast ribosomal proteins by Escherichia coli ribosome during in vivo assembly. J Biol Chem 269: 18223-18231
9. Choquet Y and Wollman FA (2002) Translational regulations as specific traits of chloroplast gene expression. FEBS Lett 529: 39-42
10. Dauvillee D, Stampacchia O, Girard-Bascou J and Rochaix JD (2003) Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA. EMBO J 22: 6378-6388
11. Emanuelsson O, Nielsen H and von Heijne G (1999) ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci 8: 978-984
12. Fargo DC, Boynton JE and Gillham NW (2001) Chloroplast ribosomal protein S7 of Chlamydomonas binds to chloroplast mRNA leader sequences and may be involved in translation initiation. Plant Cell 13: 207-218
13. Fisk DG, Walker MB and Barkan A (1999) Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. EMBO J 18: 2621-2630
14. Giglione C and Meinnel T (2001) Organellar peptide deformylases: universality of the N-terminal methionine cleavage mechanism. Trends Plant Sci 6: 566-572
15. Han CD, Coe EHJ and Martienssen RA (1992) Molecular cloning and characterization of iojap (IJ), a pattern striping gene of maize. EMBO J 11: 4037-4046
16. Hess WR and Börner T (1999) Organellar RNA polymerases of higher plants. Int Rev Cytol 190: 1-59
17. Kim J and Mayfield SP (1997) Protein disulfide isomerase as a regulator of chloroplast translational activation. Science 278: 1954-1957
18. Klein U, De Camp JD and Bogorad L (1992) Two types of chloroplast gene promoters in Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 89: 3453-3457
19. Kramer G, Rauch T, Rist W, Vorderwulbecke S, Patzelt H, Schulze-Specking A, Ban N, Deuerling E and Bukau B (2002) L23 protein functions as a chaperone docking site on the ribosome. Nature 419: 171-174
20. Lilly JW, Maul JE and Stern DB (2002) The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli. Plant Cell 14: 2681-2706
21. Liu XQ, Gillham NW and Boynton JE (1988) Chloroplast ribosomal protein L-18 in Chlamydomonas reinhardtii is processed during ribosome assembly. Mol Gen Genet 214: 588-591
22. Maul JE, Lilly JW, Cui L, DePamphilis CW, Miller W, Harris EH and Stern DB (2002) The Chlamydomonas reinhardtii Plastid Chromosome: Islands of Genes in a Sea of Repeats. Plant Cell 14: 2659-2679
23. Mayfield SP, Yohn CB, Cohen A and Danon A (1995) Regulation of chloroplast gene expression. Annu Rev Plant Physiol Plant Mol Biol 46: 147-166
24. Meurer J, Lezhneva L, Amann K, Godel M, Bezhani S, Sherameti I and Oelmuller R (2002) A peptide chain release factor 2 affects the stability of UGA-containing transcripts in Arabidopsis chloroplasts. Plant Cell 14: 3255-3269
25. Ramakrishnan V (2002) Ribosome structure and the mechanism of translation. Cell 108: 557-572
26. Randolph-Anderson BL, Gillham NW and Boynton JE (1989) Electrophoretic and immunological comparisons of chloroplast and prokaryotic ribosomal proteins reveal that certain families of large subunit proteins are evolutionarily conserved. J Mol Evol 29: 68-88
27. Rattanachaikunsopon P, Rosch C and Kuchka MR (1999) Cloning and characterization of the nuclear ACC115 gene of Chlamydomonas reinhardtii. Plant Mol Biol 39: 1-10
28. Rivier C, Goldschmidt-Clermont M and Rochaix JD (2001) Identification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii. EMBO J 20: 1765-1773
29. Rochaix JD (1996) Post-transcriptional regulation of chloroplast gene expression in Chlamydomonas reinhardtii. Plant Mol Biol 32: 327-341
30. Shrager J, Hauser C, Chang CW, Harris EH, Davies J, McDermott J, Tamse R, Zhang Z and Grossman AR (2003) Chlamydomonas reinhardtii genome project. A guide to the generation and use of the cDNA information. Plant Physiol 1312: 401-408
31. Somanchi A and Mayfield SP (2001) Regulation of chloroplast translation. In: Aro E-M and Andersson B (eds) Advances in Photosynthesis and Respiration, Vol 11, Regulation of Photosynthesis, pp 137-151. Kluwer Academic Publishers, Dordrecht, The Netherlands
32. Subramanian AR (1993) Molecular genetics of chloroplast ribosomal proteins. Trends Biochem Sci 18: 177-181
33. Tokuhisa JG, Vijayan P, Feldmann KA and Browse JA (1998) Chloroplast development at low temperatures requires a homolog of DIM1, a yeast gene encoding the 18S rRNA dimethylase. Plant Cell 10: 699-712
34. Vaistij FE, Boudreau E, Lemaire SD, Goldschmidt-Clermont M and Rochaix JD (2000) Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB/psbT/psbH gene cluster in Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 97: 14813-14818
35. 2 for survival. Plant Physiol 127: 607-14
36. Yamaguchi K and Subramanian AR (2000) The plastid ribosomal proteins. Identification of all the proteins in the 50S subunit of an organelle ribosome (chloroplast). J Biol Chem 275: 28466-28482
37. Yamaguchi K and Subramanian AR (2003) Proteomic identification of all plastid-specific ribosomal proteins in higher plant chloroplast 30S ribosomal subunit: PSRP-2 (U1A-type domains), PSRP-3α/β (ycf65 homologue) and PSRP-4 (Thx homologue). Eur J Biochem 270: 190-205
38. Yamaguchi K, von Knoblauch K and Subramanian AR (2000) The plastid ribosomal proteins. Identification of all the proteins in the 30S subunit of an organelle ribosome (chloroplast). J Biol Chem 275: 28455-28465
39. Yamaguchi K, Prieto S, Beligni MV, Haynes PA, McDonald WH, Yates III JR and Mayfield SP (2002) Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologues of bacterial S2, S3, and S5. Plant Cell 14: 2957-2974
40. Yamaguchi K, Beligni MV, Prieto S, Haynes PA, McDonald, WH, Yates III JR and Mayfield SP (2003) Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome: identification of proteins unique to the 70S ribosome. J Biol Chem 278: 33774-33785
41. Yohn CB, Cohen A, Danon A and Mayfield SP (1998) A poly(A) binding protein functions in the chloroplast as a message-specific translation factor. Proc Natl Acad Sci USA 95: 2238-2243
42. Zerges W (2000) Translation in chloroplasts. Biochimie 82: 583-601
43. Zhao YY, Xu T, Zucchi P and Bogorad L (1999) Subpopulations of chloroplast ribosomes change during photoregulated development of Zea mays leaves: ribosomal proteins L2, L21, and L29. Proc Natl Acad Sci USA 96: 8997-9002