Cis-acting elements and trans-acting factors for accurate translation of chloroplast psbA mRNAs: Development of an in vitro translation system from tobacco chloroplasts

EMBO Journal

Volumn 15, Issue 7, 1996, Pages 1687-1695

  Hirose, Tetsuro ^a   Sugiura, Masahiro ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Chloroplast; Cis acting element; In vitro translation; psbA; Trans acting factor

Indexed keywords

CHLOROPLAST RNA; CIS ACTING ELEMENT; MESSENGER RNA; TRANS ACTING FACTOR;

ARTICLE; CHLOROPLAST; CONTROLLED STUDY; ELECTROPHORETIC MOBILITY; HIGHER PLANT; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; RECOMBINANT GENE; RNA SEQUENCE; STRUCTURE ACTIVITY RELATION; TRANSLATION REGULATION;

EMBRYOPHYTA; NICOTIANA; NICOTIANA SPP.; NICOTIANA TABACUM;

EID: 0029971659     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1002/j.1460-2075.1996.tb00514.x     Document Type: Article

References (56)

1. Bard, J., Bourque, D P., Hildebrand, M. and Zaitlin, D. (1985) In vitro expression of chloroplast genes in lysates of higher plant chloroplasts. Proc. Natl Acad. Sci. USA, 82, 3983-3987.
2. Barkan, A. (1988) Proteins encoded by a complex chloroplast transcription unit are each translated from both monocistronic and polycistronic mRNAs EMBO J., 7, 2637-2644.
3. Barkan, A., Walker, M., Nolasco, M. and Johnson, D. (1994) A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J., 13, 3170-3181.
4. Bartlett, S.G., Grossman, A.R. and Chua, N.H. (1982) In vitro synthesis and uptake of cytoplasmically-synthesized chloroplast proteins. In Edelman, M., Halllick, R.B and Chua, N.H. (eds), Methods in Chloroplast Molecular Biology. Elsevier, New York, NY, pp. 1081-1091.
5. Bedbrook, J.R , Link, G., Coen, D.M., Bogorad, L. and Rich, A. (1978) Maize plastid gene expressed during photoregulated development. Proc. Natl Acad. Sci. USA, 75, 3060-3064.
6. Bogorad, L., Bedbrook, J.R., Coen, D.M., Kolodner, R. and Link, G. (1978) Genes for chloroplast proteins and rRNAs. In Akoyunoglou, G. and Argyroudi-Akoyunoglou, J. (eds), Chloroplast Development. Elsevier/ North-Holland, Amsterdam, The Netherlands, pp. 541-551.
7. Bonham-Smith, P.C. and Bourque, D.P. (1989) Translation of chloroplast-encoded mRNA: potential initiation and termination signals. Nucleic Acids Res., 17, 2057-2080.
8. Boni, I.V., Isaeva, D.M., Musychenko, M.L. and Tzareva, N.V. (1991) Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1. Nucleic Acids Res., 19, 155-162.
9. Bottomley, W. and Whitfeld, P. (1978) The products of in vitro transcription and translation of spinach chloroplast DNA. In Akoyunoglou, G. and Argyroudi-Akoyunoglou, J. (eds), Chloroplast Development. Elsevier/North-Holland, Amsterdam, The Netherlands, pp, 657-662.
10. Boynton, J.E. et al. (1988) Chloroplast transformation in Chlamydomonas with high velocity microprojectites. Science, 240, 1534-1538.
11. Chen, X., Kindle, K. and Stern, D.B. (1993) Initiation codon mutations in the Chlamydomonas chloroplast petD gene result in temperature-sensitive photosynthetic growth. EMBO J., 12, 3627-3635.
12. Danon, A. and Mayfield, S.P.Y. (1991) Light regulated translational activators: identification of chloroplast gene specific mRNA binding proteins. EMBO J., 10, 3993-4002.
13. Danon, A. and Mayfield, S.P.Y. (1994a) ADP-dependent phosphorylation regulates RNA-binding in vitro: implications in light-modulated translation. EMBO J., 13, 2227-2235
14. Danon, A. and Mayfield, S.P.Y. (1994b) Light-regulated translation of chloroplast messenger RNAs through redox potential. Science, 266, 1717-1719.
15. Deng, X.W. and Gruissem, W. (1988) Constitutive transcription and regulation of gene expression in non-photosynthetic plastids of higher plants. EMBO J., 7, 3301-3308.
16. Driesel, A., Speirs, J. and Bohnert, H J. (1980) Spinach chloroplast mRNA for a 32000 dalton polypeptide. Size and localization on the physical map of chloroplast DNA. Biochim. Biophys. Acta, 610, 297-310.
17. Franzetti, B., Carol, P. and Mache, R. (1992) Characterization and RNA-binding properties of a chloroplast S1-like ribosomal protein. J. Biol. Chem., 267, 19075-19081.
18. Freyer, R., Hoch, B., Neckermann, K., Maier, R.M. and Kossel, H. (1993) RNA editing in maize chloroplasts is a processing step independent of splicing and cleavage to monocistronic mRNAs. Plant J., 4, 621-629.
19. Gillham, N.W., Boynton, J.E. and Hauser, C.R. (1994) Translation regulation of gene expression in chloroplasts and mitochondria. Annu. Rev. Genet., 28, 71-93.
20. Gruissem, W. and Tonkyn, J.C. (1993) Control mechanisms of plastid gene expression. Crit. Rev. Plant Sci., 12, 19-55.
21. Harris, E.H., Boynton, J.E. and Gillham, N W. (1994) Chloroplast ribosomes and protein synthesis. Microbiol. Rev., 58, 700-754.
22. Hartley, M.R., Wheeler, A M. and Ellis, R.J. (1975) Protein synthesis in chloroplasts, V. Translation of messenger RNA for the large subunit of fraction I protein in a heterologous cell free system. J. Mol. Biol., 91, 67-77.
23. Herrmann, R.G., Westhoff, P. and Link, G. (1992) Biogenesis of plastids in higher plants. In Herrmann, R.G. (ed.), Cell Organelles. Advances in Plant Gene Research. Springer-Verlag, Vienna, Austria, Vol. 6, pp. 276-349.
24. Hirose, T., Wakasugi, T., Sugiura, M. and Kössel, H. (1994) RNA editing of tobacco petB mRNAs occurs both in chloroplasts and non-photosynthetic proplastids. Plant Mol. Biol., 26, 509-513.
25. Hirose, T., Sugita, M. and Sugiura, M. (1995) In vivo and in vitro analysis of translation of psbA transcripts in tobacco chloroplasts. In Mathis, P. (ed.), Research in Photosynthesis, Kluwer, Dordrecht, The Netherlands, in press.
26. Kim, J. and Mullet, J.E. (1994) Ribosome binding sites on chloroplast rbcL and psbA mRNAs and light-induced initiation of D1 translation, Plant Mol. Biol., 25, 437-448.
27. Koo, J.S. and Spremulli, L. (1993a) Analysis of the translational initiation region on the Euglena gracilis chloroplast ribulose-bisphosphate carboxylase/oxygenase (rbcL) messenger RNA. J. Biol. Chem., 269, 7494-7500.
28. Koo, J S. and Spremulli, L. (1993b) Effect of the secondary structure in the Euglena gracilis chloroplast ribulose-bisphosphate carboxylase/ oxygenase messenger RNA on translational initiation, J. Biol Chem., 269, 7501-7508.
29. Mayfield, S.P., Cohen, A., Danon, A. and Yohn, C.B. (1994) Translation of the psbA mRNA of Chlamydomonas reinhardtii requires a structured RNA element contained within the 5′ untranslated region. J. Cell Biol., 127, 1537-1545.
30. McCarthy, J. and Brimacombe, R. (1994) Prokaryotic translation: the interactive pathway leading to initiation. Trends Genet., 10, 402-407.
31. Nickelsen, J., van Dillewijn, J., Rahire, M and Roehaix, J.D. (1994) Determinants for stability of the chloroplast psbD RNA are located within its short leader region in Chlamydomonas reinhardtii. EMBO J., 13, 3182-3191
32. Reinbothe, S., Reinbothe, C., Heintzen, C , Scidenbecher, C. and Parthier, B (1993) A methyl jasmonate-induced shift in the length of the 5′ untranslated region impairs translation of the plastid rbcL transcript in barley. EMBO J., 12, 1505-1512.
33. Rochaix, J.D. (1992) Post-transcriptional steps in the expression of chloroplast genes. Annu. Rev. Cell Biol., 8, 1-28.
34. Ruf, M. and Kossel, H. (1988) Occurrence and spacing of ribosome recognition sites in mRNAs of chloroplasts from higher plants. FEBS Lett., 240, 41-44.
35. Ruf, S., Zeltz, P. and Kossel, H. (1994) RNA editing of unspliced and dicistronic transcripts of the intron containing reading frame IRF170 from maize chloroplasts. Proc. Natl Acad. Sci USA, 91, 2295-2299.
36. Sagher, D., Grosfeld, H. and Edelman, M. (1976) Large subunit ribulosebisphosphate carboxylase messenger RNA from Euglena chloroplasts. Proc Natl Acad. Sci USA, 73, 722-726.
37. Sakamoto, W., Kindle, K.L. and Stern, D.B. (1993) In vivo analysis of Chlamydomonas chloroplast petD gene expression using stable transformation of β-glucuronidase translational fusions. Proc. Natl Acad. Sci. USA, 90, 497-501.
38. 6/f complex. Plant J , 6, 503-512.
39. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
40. Shinozaki, K. et al. (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J., 5, 2043-2049.
41. Staub, J.M. and Maliga, P. (1993) Accumulation of D1 polypeptide in tobacco plastid is regulated via the untranslated region of the psbA mRNA. EMBO J., 12, 601-606.
42. Staub, J.M. and Maliga, P. (1994) Translation of psbA mRNA is regulated by light via the 5′-untranslated region in tobacco plastids. Plant J., 6, 547-553.
43. Steinmetz, A. and Weil, J.H. (1989) Protein synthesis in chloroplasts. In Marcus, A. (ed.), The Biochemistry of Plants. Academic Press, San Diego, CA, Vol. 5, pp. 193-227.
44. Subramanian, A.R. (1993) Molecular genetics of chloroplast ribosomal proteins. Trends Biochem. Sci , 18, 177-180.
45. Sugita, M. and Sugiura, M. (1984) Nucleotide sequence and transcription of the gene for the 32,000 dalton thylakoid membrane protein from Nicotiana tabacum. Mol. Gen. Genet., 195, 308-313.
46. Sugiura, M. (1992) The chloroplast genome. Plant Mol. Biol., 18, 149-168
47. Sugiura, M., Shinozaki, K., Zaita, N., Kusuda, M. and Kumano, M. (1986) Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: mapping of eleven ribosomal protein genes, Plant Sci., 44, 211-216.
48. Svab, Z. and Maliga, P. (1993) High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene. Proc. Natl Acad. Sci. USA, 90, 913-917.
49. Svab, Z , Hajdukiewicz, P. and Maliga, P. (1990) Stable transformation of plastids in higher plants. Proc. Natl Acad. Sci. USA, 87, 8526-8530
50. Taniguchi, M., Kuroda, H. and Satoh, K. (1993) ATP-dependent protein synthesis in isolated pea chloroplasts. FEBS Lett., 317, 57-61.
51. Thanaraj, T.A. and Pandit, M.W. (1989) An additional ribosome-binding site on mRNA of highly expressed genes and a bifunctional site on the colicin fragment of 16S rRNA from Escherichia coli: important determinants of the efficiency of translation initiation. Nucleic Acids Res., 17, 2973-2985.
52. Tohdoh, N. and Sugiura, M. (1982) The complete nucleotide sequence of a 16S ribosomal RNA gene from tobacco chloroplasts. Gene, 17, 213-218.
53. Wang, C C., Roney, W.B., Alston, R.L. and Spremulli, L.L. (1989) Initiation complex formation on Euglena chloroplast 30S subunits in the presence of natural mRNAs. Nucleic Acids Res., 17, 9735-9747.
54. Westhoff, P., Nelson, N., Bühnemann, H. and Herrmann, R.G. (1981) Localization of genes for coupling factor subunits on the spinach plastid chromosome. Curr. Genet., 4, 109-120.
55. Zerges, W. and Rochaix, J.D. (1994) The 5′ leader of a chloroplast mRNA mediates the translations! requirements for two nucleus-encoded functions in Chlamydomonas reinhardtii. Mol. Cell. Biol., 14, 5268-5277.
56. Zhang, J. and Deutscher, M.P. (1992) A uridine-rich sequence required for translation of prokaryotic mRNA. Proc. Natl Acad. Sci. USA, 89, 2605-2609.