Intrinsic flexibility and structural adaptability of Plasticins membrane-damaging peptides as a strategy for functional versatility

European Biophysics Journal

Volumn 36, Issue 8, 2007, Pages 901-909

  El Amri, C ^a   Bruston, F ^a   Joanne, P ^a   Lacombe, C ^a   Nicolas, P ^a  

^a SORBONNE UNIVERSITÉ   (France)

Author keywords

Antimicrobial peptide; Conformational flexibility; Dermaseptins; Frog skin; Plasticins; Structural polymorphism

Indexed keywords

CELL PENETRATING PEPTIDE; PEPTIDE DERIVATIVE; PLASTICIN; UNCLASSIFIED DRUG; VIRUS FUSION PROTEIN;

AMINO ACID SEQUENCE; ANTIMICROBIAL ACTIVITY; BINDING AFFINITY; CELL MEMBRANE; EUKARYOTIC CELL; FROG; HYDROPHOBICITY; LIPID BILAYER; MOLECULAR INTERACTION; NONHUMAN; OLIGOMERIZATION; PLASTICITY; PROKARYOTIC CELL; REVIEW; SKIN;

AMINO ACID SEQUENCE; ANIMALS; ANTI-BACTERIAL AGENTS; ANURA; EYE PROTEINS; HUMANS; MEMBRANES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NERVE TISSUE PROTEINS; PROTEIN CONFORMATION;

ANURA; EUKARYOTA; PROKARYOTA;

EID: 35748933858     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00249-007-0199-2     Document Type: Review

References (57)

1. Amiche M, Seon AA, Pierre TN, Nicolas P (1999) The dermaseptin precursors: a protein family with a common preproregion and a variable C-terminal antimicrobial domain. FEBS Lett 456:352-356
2. Amiche M, Seon AA, Wroblewski H, Nicolas P (2000) Isolation of dermatoxin from frog skin, an antibacterial peptide encoded by a novel member of the dermaseptin genes family. Eur J Biochem 267:4583-4592
3. Bechinger B, Lohner K (2006) Detergent-like actions of linear amphipathic cationic antimicrobial peptides. Biochim Biophys Acta 1758:1529-1539
4. Blume A, Hubner W, Messner G (1988) Fourier transform infrared spectroscopy of 13C = O-labeled phospholipids hydrogen bonding to carbonyl groups. Biochemistry 27:8239-8249
5. Brogden KA, Ackermann M, McCray PB Jr, Tack BF (2003) Antimicrobial peptides in animals and their role in host defences. Int J Antimicrob Agents 22:465-478
6. Bruston F, Lacombe C, Zimmermann K, Piesse C, Nicolas P, El Amri C (2007) Structural malleability of plasticins: preorganized conformations in solution and relevance for antimicrobial activity. Biopolymers 86:42-56
7. Buzon V, Padros E, Cladera J (2005) Interaction of fusion peptides from HIV gp41 with membranes: a time-resolved membrane binding, lipid mixing, and structural study. Biochemistry 44:13354-13364
8. Cameron DG, Casal HL, Mantsch HH (1980) Characterization of the pretransition in 1,2-dipalmitoyl-sn-glycero-3-phosphocholine by Fourier transform infrared spectroscopy. Biochemistry 19:3665-3672
9. Castano S, Desbat B, Laguerre M, Dufourcq J (1999) Structure, orientation and affinity for interfaces and lipids of ideally amphipathic lytic LiKj(i=2j) peptides. Biochim Biophys Acta 1416:176-194
10. Castellano P, Vignolo G, Farias RN, Arrondo JL, Chehin R (2007) Molecular view by fourier transform infrared spectroscopy of the relationship between lactocin 705 and membranes: speculations on antimicrobial mechanism. Appl Environ Microbiol 73:415-420
11. Chan DI, Prenner EJ, Vogel HJ (2006) Tryptophan- and arginine-rich antimicrobial peptides: structures and mechanisms of action. Biochim Biophys Acta 1758:1184-1202
12. Charpentier S, Amiche M, Mester J, Vouille V, Le Caer JP, Nicolas P, Delfour A (1998) Structure, synthesis, and molecular cloning of dermaseptins B, a family of skin peptide antibiotics. J Biol Chem 273:14690-14697
13. Clayton AH, Atcliffe BW, Howlett GJ, Sawyer WH (2006) Conformation and orientation of penetratin in phospholipid membranes. J Pept Sci 12:233-238
14. Cole AM, Liao HI, Ganz T, Yang OO (2003) Antibacterial activity of peptides derived from envelope glycoproteins of HIV-1. FEBS Lett 535:195-199
15. Doherty T, Waring AJ, Hong M (2006) Peptide-lipid interactions of the beta-hairpin antimicrobial peptide tachyplesin and its linear derivatives from solid-state NMR. Biochim Biophys Acta 1758:1285-1291
16. Duda TF Jr, Vanhoye D, Nicolas P (2002) Roles of diversifying selection and coordinated evolution in the evolution of amphibian antimicrobial peptides. Mol Biol Evol 19:858-864
17. Durr UH, Sudheendra US, Ramamoorthy A (2006) LL-37, the only human member of the cathelicidin family of antimicrobial peptides. Biochim Biophys Acta 1758:1408-1425
18. El Amri C, Lacombe C, Zimmerman K, Ladram A, Amiche M, Nicolas P, Bruston F (2006) The plasticins: membrane adsorption, lipid disorders, and biological activity. Biochemistry 45:14285-14297
19. Epand RM, Vogel HJ (1999) Diversity of antimicrobial peptides and their mechanisms of action. Biochim Biophys Acta 1462:11-28
20. Fazio MA, Jouvensal L, Vovelle F, Bulet P, Miranda MT, Daffre S, Miranda A (2007) Biological and structural characterization of new linear gomesin analogues with improved therapeutic indices. Biopolymers
21. Henriques ST, Melo MN, Castanho MA (2006) Cell-penetrating peptides and antimicrobial peptides: how different are they? Biochem J 399:1-7
22. Hofmann MW, Weise K, Ollesch J, Agrawal P, Stalz H, Stelzer W, Hulsbergen F, de Groot H, Gerwert K, Reed J, Langosch D (2004) De novo design of conformationally flexible transmembrane peptides driving membrane fusion. Proc Natl Acad Sci USA 101:14776-14781
23. Hsu CH, Chen C, Jou ML, Lee AY, Lin YC, Yu YP, Huang WT, Wu SH (2005) Structural and DNA-binding studies on the bovine antimicrobial peptide, indolicidin: evidence for multiple conformations involved in binding to membranes and DNA. Nucleic Acids Res 33:4053-4064
24. Huang HW (2006) Molecular mechanism of antimicrobial peptides: the origin of cooperativity. Biochim Biophys Acta 1758:1292-1302
25. Jelinek R, Kolusheva S (2005) Membrane interactions of host-defense peptides studied in model systems. Curr Protein Pept Sci 6:103-114
26. Jin Y, Hammer J, Pate M, Zhang Y, Zhu F, Zmuda E, Blazyk J (2005) Antimicrobial activities and structures of two linear cationic peptide families with various amphipathic beta-sheet and alpha-helical potentials. Antimicrob Agents Chemother 49:4957-4964
27. Kim S, Jeon TJ, Oberai A, Yang D, Schmidt JJ, Bowie JU (2005) Transmembrane glycine zippers: physiological and pathological roles in membrane proteins. Proc Natl Acad Sci USA 102:14278-14283
28. Ladokhin AS, White SH (1999) Folding of amphipathic alpha-helices on membranes: energetics of helix formation by melittin. J Mol Biol 285:1363-1369
29. Leite JR, Silva LP, Rodrigues MI, Prates MV, Brand GD, Lacava BM, Azevedo RB, Bocca AL, Albuquerque S, Bloch C Jr (2005) Phylloseptins: a novel class of anti-bacterial and anti-protozoan peptides from the Phyllomedusa genus. Peptides 26:565-573
30. Lorizate M, de la Arada I, Huarte N, Sanchez-Martinez S, de la Torre BG, Andreu D, Arrondo JL, Nieva JL (2006) Structural analysis and assembly of the HIV-1 Gp41 amino-terminal fusion peptide and the pretransmembrane amphipathic-at-interface sequence. Biochemistry 45:14337-14346
31. Lotta TI, Salonen IS, Virtanen JA, Eklund KK, Kinnunen PK (1988) Fourier transform infrared study of fully hydrated dimyristoylphosphatidylglycerol. Effects of Na+ on the sn-1′ and sn-3′ headgroup stereoisomers. Biochemistry 27:8158-8169
32. Magzoub M, Eriksson LE, Graslund A (2002) Conformational states of the cell-penetrating peptide penetratin when interacting with phospholipid vesicles: effects of surface charge and peptide concentration. Biochim Biophys Acta 1563:53-63
33. Mor A, Nguyen VH, Delfour A, Migliore-Samour D, Nicolas P (1991) Isolation, amino acid sequence, and synthesis of dermaseptin, a novel antimicrobial peptide of amphibian skin. Biochemistry 30:8824-8830
34. Nagpal S, Kaur KJ, Jain D, Salunke DM (2002) Plasticity in structure and interactions is critical for the action of indolicidin, an antibacterial peptide of innate immune origin. Protein Sci 11:2158-2167
35. Nes IF, Holo H (2000) Class II antimicrobial peptides from lactic acid bacteria. Biopolymers 55:50-61
36. Nicolas P, Vanhoye D, Amiche M (2003) Molecular strategies in biological evolution of antimicrobial peptides. Peptides 24:1669-1680
37. Noinville S, Bruston F, El Amri C, Baron D, Nicolas P (2003) Conformation, orientation, and adsorption kinetics of dermaseptin B2 onto synthetic supports at aqueous/solid interface. Biophys J 85:1196-1206
38. Oren Z, Lerman JC, Gudmundsson GH, Agerberth B, Shai Y (1999) Structure and organization of the human antimicrobial peptide LL-37 in phospholipid membranes: relevance to the molecular basis for its non-cell-selective activity. Biochem J 341(Pt 3):501-513
39. Papo N, Shai Y (2003) Can we predict biological activity of antimicrobial peptides from their interactions with model phospholipid membranes? Peptides 24:1693-1703
40. Pierre TN, Seon AA, Amiche M, Nicolas P (2000) Phylloxin, a novel peptide antibiotic of the dermaseptin family of antimicrobial/opioid peptide precursors. Eur J Biochem 267:370-378
41. Powers JP, Hancock RE (2003) The relationship between peptide structure and antibacterial activity. Peptides 24:1681-1691
42. Raguse TL, Porter EA, Weisblum B, Gellman SH (2002) Structure-activity studies of 14-helical antimicrobial beta-peptides: probing the relationship between conformational stability and antimicrobial potency. J Am Chem Soc 124:12774-12785
43. Ramirez-Alvarado M, Blanco FJ, Niemann H, Serrano L (1997) Role of beta-turn residues in beta-hairpin formation and stability in designed peptides. J Mol Biol 273:898-912
44. Rao AG (1999) Conformation and antimicrobial activity of linear derivatives of tachyplesin lacking disulfide bonds. Arch Biochem Biophys 361:127-134
45. Reichert J, Grasnick D, Afonin S, Buerck J, Wadhwani P, Ulrich AS (2007) A critical evaluation of the conformational requirements of fusogenic peptides in membranes. Eur Biophys J
46. Rinaldi AC (2002) Antimicrobial peptides from amphibian skin: an expanding scenario. Curr Opin Chem Biol 6:799-804
47. Robinson WE Jr, McDougall B, Tran D, Selsted ME (1998) Anti-HIV-1 activity of indolicidin, an antimicrobial peptide from neutrophils. J Leukoc Biol 63:94-100
48. Sato H, Feix JB (2006) Peptide-membrane interactions and mechanisms of membrane destruction by amphipathic alpha-helical antimicrobial peptides. Biochim Biophys Acta 1758:1245-1256
49. Shai Y (1999) Mechanism of the binding, insertion and destabilization of phospholipid bilayer membranes by alpha-helical antimicrobial and cell non-selective membrane-lytic peptides. Biochim Biophys Acta 1462:55-70
50. Stahelin RV, Cho W (2001) Differential roles of ionic, aliphatic, and aromatic residues in membrane-protein interactions: a surface plasmon resonance study on phospholipases A2. Biochemistry 40:4672-4678
51. van Kan EJ, van der Bent A, Demel RA, de Kruijff B (2001) Membrane activity of the peptide antibiotic clavanin and the importance of its glycine residues. Biochemistry 40:6398-6405
52. Vanhoye D, Bruston F, Nicolas P, Amiche M (2003) Antimicrobial peptides from hylid and ranin frogs originated from a 150-million-year-old ancestral precursor with a conserved signal peptide but a hypermutable antimicrobial domain. Eur J Biochem 270:2068-2081
53. Vanhoye D, Bruston F, El Amri S, Ladram A, Amiche M, Nicolas P (2004) Membrane association, electrostatic sequestration, and cytotoxicity of Gly-Leu-rich peptide orthologs with differing functions. Biochemistry 43:8391-8409
54. Wieprecht T, Dathe M, Beyermann M, Krause E, Maloy WL, MacDonald DL, Bienert M (1997) Peptide hydrophobicity controls the activity and selectivity of magainin 2 amide in interaction with membranes. Biochemistry 36:6124-6132
55. Wimmer R, Andersen KK, Vad B, Davidsen M, Molgaard S, Nesgaard LW, Kristensen HH, Otzen DE (2006) Versatile interactions of the antimicrobial peptide novispirin with detergents and lipids. Biochemistry 45:481-497
56. Zelezetsky I, Tossi A (2006) Alpha-helical antimicrobial peptides-Using a sequence template to guide structure-activity relationship studies. Biochim Biophys Acta 1758:1436-1449
57. Zelezetsky I, Pacor S, Pag U, Papo N, Shai Y, Sahl HG, Tossi A (2005) Controlled alteration of the shape and conformational stability of alpha-helical cell-lytic peptides: effect on mode of action and cell specificity. Biochem J 390:177-188