-
1
-
-
20144372744
-
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
-
15774886. 10.1128/JB.187.7.2426-2438.2005
-
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. SR Gill DE Fouts GL Archer EF Mongodin RT Deboy J Ravel IT Paulsen JF Kolonay L Brinkac M Beanan RJ Dodson SC Daugherty R Madupu SV Angiuoli AS Durkin DH Haft J Vamathevan H Khouri T Utterback C Lee G Dimitrov L Jiang H Qin J Weidman K Tran K Kang IR Hance KE Nelson CM Fraser, J Bacteriol 2005 187 2426 2438 15774886 10.1128/JB.187.7.2426-2438.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 2426-2438
-
-
Gill, S.R.1
Fouts, D.E.2
Archer, G.L.3
Mongodin, E.F.4
Deboy, R.T.5
Ravel, J.6
Paulsen, I.T.7
Kolonay, J.F.8
Brinkac, L.9
Beanan, M.10
Dodson, R.J.11
Daugherty, S.C.12
Madupu, R.13
Angiuoli, S.V.14
Durkin, A.S.15
Haft, D.H.16
Vamathevan, J.17
Khouri, H.18
Utterback, T.19
Lee, C.20
Dimitrov, G.21
Jiang, L.22
Qin, H.23
Weidman, J.24
Tran, K.25
Kang, K.26
Hance, I.R.27
Nelson, K.E.28
Fraser, C.M.29
more..
-
2
-
-
33645827531
-
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
-
16585510. 10.1073/pnas.0600938103
-
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. SL Chen CS Hung J Xu CS Reigstad V Magrini A Sabo D Blasiar T Bieri RR Meyer P Ozersky JR Armstrong RS Fulton JP Latreille J Spieth TM Hooton ER Mardis SJ Hultgren JI Gordon, Proc Natl Acad Sci USA 2006 103 5977 82 16585510 10.1073/pnas.0600938103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 5977-82
-
-
Chen, S.L.1
Hung, C.S.2
Xu, J.3
Reigstad, C.S.4
Magrini, V.5
Sabo, A.6
Blasiar, D.7
Bieri, T.8
Meyer, R.R.9
Ozersky, P.10
Armstrong, J.R.11
Fulton, R.S.12
Latreille, J.P.13
Spieth, J.14
Hooton, T.M.15
Mardis, E.R.16
Hultgren, S.J.17
Gordon, J.I.18
-
3
-
-
0036889373
-
Inferences from whole-genome sequences of bacterial pathogens
-
10.1016/S0959-437X(02)00361-1. 12433587
-
Inferences from whole-genome sequences of bacterial pathogens. TS Whittam AC Bumbaugh, Curr Opin Genet Dev 2002 12 719 725 10.1016/S0959-437X(02)00361-1 12433587
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 719-725
-
-
Whittam, T.S.1
Bumbaugh, A.C.2
-
4
-
-
0034283229
-
Intraspecies variation in bacterial genomes: The need for a species genome concept
-
10.1016/S0966-842X(00)01791-1. 10989306
-
Intraspecies variation in bacterial genomes: the need for a species genome concept. R Lan RR Reeves, Trends Microbiol 2000 8 396 401 10.1016/S0966-842X(00)01791-1 10989306
-
(2000)
Trends Microbiol
, vol.8
, pp. 396-401
-
-
Lan, R.1
Reeves, R.R.2
-
5
-
-
0041900296
-
Streptococcus
-
Washington, D.C: ASM Press Murray PR, Baron EJ, Jorgensen JH, Pfaller MA, Yolken RH 8
-
Streptococcus. K Ruoff RA Whiley D Beighton, Manual of clinical microbiology Washington, D.C: ASM Press, Murray PR, Baron EJ, Jorgensen JH, Pfaller MA, Yolken RH, 8 2003 1 405 421
-
(2003)
Manual of Clinical Microbiology
, vol.1
, pp. 405-421
-
-
Ruoff, K.1
Whiley, R.A.2
Beighton, D.3
-
6
-
-
4644274689
-
Microarray analysis of pneumococcal gene expression during invasive disease
-
15385455. 10.1128/IAI.72.10.5582-5596.2004
-
Microarray analysis of pneumococcal gene expression during invasive disease. CJ Orhieula JN Radin JE Sublett G Gao D Kaushal EI Tuomanen, Infect Immun 2004 72 5582 5596 15385455 10.1128/IAI.72.10.5582-5596.2004
-
(2004)
Infect Immun
, vol.72
, pp. 5582-5596
-
-
Orhieula, C.J.1
Radin, J.N.2
Sublett, J.E.3
Gao, G.4
Kaushal, D.5
Tuomanen, E.I.6
-
7
-
-
0037007095
-
Genome sequence and comparative microarray analysis of serotype M18 group a Streptococcus strains associated with acute rheumatic fever outbreaks
-
11917108. 10.1073/pnas.062526099
-
Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks. JC Smoot KD Barbian JJ Van Gompel LM Smoot MS Chaussee GL Sylva DE Sturdevant SM Ricklefs SF Porcella LD Parkins SB Beres DS Campbell TM Smith Q Zhang V Kapur J Daly LG Veasy JM Musser, Proc Natl Acad Sci USA 2002 99 4668 73 11917108 10.1073/pnas.062526099
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4668-73
-
-
Smoot, J.C.1
Barbian, K.D.2
Van Gompel, J.J.3
Smoot, L.M.4
Chaussee, M.S.5
Sylva, G.L.6
Sturdevant, D.E.7
Ricklefs, S.M.8
Porcella, S.F.9
Parkins, L.D.10
Beres, S.B.11
Campbell, D.S.12
Smith, T.M.13
Zhang, Q.14
Kapur, V.15
Daly, J.16
Veasy, L.G.17
Musser, J.M.18
-
8
-
-
18644378733
-
Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease
-
10.1046/j.1365-2958.2002.03126.x. 12354221
-
Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. P Glaser C Rusniok C Buchrieser R Chevalier L Frangeul T Msadek M Zouine E couve L Lalioui C Poyart P Trieu-Cuot F Kunst, Mol Microbiol 2002 45 1499 513 10.1046/j.1365-2958.2002.03126.x 12354221
-
(2002)
Mol Microbiol
, vol.45
, pp. 1499-513
-
-
Glaser, P.1
Rusniok, C.2
Buchrieser, C.3
Chevalier, R.4
Frangeul, L.5
Msadek, T.6
Zouine, M.7
Couve, E.8
Lalioui, L.9
Poyart, C.10
Trieu-Cuot, P.11
Kunst, F.12
-
9
-
-
35348919635
-
Pneumococcal disease and the role of conjugate vaccines
-
Pneumococcal disease and the role of conjugate vaccines. DL Klein, Microb Drug Resist 1999 8 275 282
-
(1999)
Microb Drug Resist
, vol.8
, pp. 275-282
-
-
Klein, D.L.1
-
10
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520. 14530136
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
11
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
PAML: a program package for phylogenetic analysis by maximum likelihood. Z Yang, Comput Appl Biosci 1997 3 555 556
-
(1997)
Comput Appl Biosci
, vol.3
, pp. 555-556
-
-
Yang, Z.1
-
12
-
-
0033670249
-
Horizontal gene transfer in bacterial and archaeal complete genomes
-
11076857. 10.1101/gr.130000
-
Horizontal gene transfer in bacterial and archaeal complete genomes. S Garcia-Vallvé A Romeu J Palau, Genome Res 2000 10 1719 1725 11076857 10.1101/gr.130000
-
(2000)
Genome Res
, vol.10
, pp. 1719-1725
-
-
Garcia-Vallvé, S.1
Romeu, A.2
Palau, J.3
-
13
-
-
0037264679
-
Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria
-
12620124. 10.1186/gb-2003-4-2-r14
-
Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria. G Xie CA Bonner T Bretin R Gottardo NO Keyhani RA Jensen, Genome Biol 2003 4 R14 12620124 10.1186/gb-2003-4-2-r14
-
(2003)
Genome Biol
, vol.4
, pp. 14
-
-
Xie, G.1
Bonner, C.A.2
Bretin, T.3
Gottardo, R.4
Keyhani, N.O.5
Jensen, R.A.6
-
14
-
-
20244389659
-
Phylogenetic relationships and genotyping of the genus Streptococcus by sequence determination of the RNase P RNA gene, rnpB
-
10.1099/ijs.0.02639-0
-
Phylogenetic relationships and genotyping of the genus Streptococcus by sequence determination of the RNase P RNA gene, rnpB. J Täpp M Thollesson B Herrmann, Internat J of Syst Evol Microbiol 2003 53 1861 1871 10.1099/ijs.0.02639-0
-
(2003)
Internat J of Syst Evol Microbiol
, vol.53
, pp. 1861-1871
-
-
Täpp, J.1
Thollesson, M.2
Herrmann, B.3
-
15
-
-
33750965783
-
Gene gain and gene loss in Streptococcus: Is it driven by habitat?
-
10.1093/molbev/msl115. 16966682
-
Gene gain and gene loss in Streptococcus: Is it driven by habitat? PR Marri W Hao GB Golding, Mol Biol Evol 2006 23 2379 2391 10.1093/molbev/msl115 16966682
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2379-2391
-
-
Marri, P.R.1
Hao, W.2
Golding, G.B.3
-
16
-
-
33846904216
-
Extent of horizontal gene transfer in evolution of streptococci of the salivarius group
-
17085557. 10.1128/JB.01058-06
-
Extent of horizontal gene transfer in evolution of streptococci of the salivarius group. C Delorme C Poyart SD Ehrlich P Renault, J Bacteriol 2007 189 1330 1341 17085557 10.1128/JB.01058-06
-
(2007)
J Bacteriol
, vol.189
, pp. 1330-1341
-
-
Delorme, C.1
Poyart, C.2
Ehrlich, S.D.3
Renault, P.4
-
17
-
-
0034897709
-
Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
-
11470850
-
Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. M Anisimova JP Bielawski Z Yang, Mol Biol Evol 2001 18 1585 1592 11470850
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1585-1592
-
-
Anisimova, M.1
Bielawski, J.P.2
Yang, Z.3
-
18
-
-
0036272936
-
Accuracy and power of Bayes prediction of amino acid sites under positive selection
-
Accuracy and power of Bayes prediction of amino acid sites under positive selection. M Anisimova JP Bielawski Z Yang, Mol Biol Evol 2001 19 950 958
-
(2001)
Mol Biol Evol
, vol.19
, pp. 950-958
-
-
Anisimova, M.1
Bielawski, J.P.2
Yang, Z.3
-
19
-
-
0042208362
-
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
-
12871927
-
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. M Anisimova R Nielsen Z Yang, Genetics 2003 164 1229 1236 12871927
-
(2003)
Genetics
, vol.164
, pp. 1229-1236
-
-
Anisimova, M.1
Nielsen, R.2
Yang, Z.3
-
20
-
-
0037986694
-
Potential impact of recombination on sitewise approaches for detecting positive natural selection
-
10.1017/S0016672303006128. 12872913
-
Potential impact of recombination on sitewise approaches for detecting positive natural selection. D Shriner DC Nickle MA Jensen JI Mullins, Genet Res 2003 81 115 21 10.1017/S0016672303006128 12872913
-
(2003)
Genet Res
, vol.81
, pp. 115-21
-
-
Shriner, D.1
Nickle, D.C.2
Jensen, M.A.3
Mullins, J.I.4
-
21
-
-
33645229840
-
Estimating diversifying selection and functional constraint in the presence of recombination
-
16387887. 10.1534/genetics.105.044917
-
Estimating diversifying selection and functional constraint in the presence of recombination. DJ Wilson G McVean, Genetics 2006 172 1411 1425 16387887 10.1534/genetics.105.044917
-
(2006)
Genetics
, vol.172
, pp. 1411-1425
-
-
Wilson, D.J.1
McVean, G.2
-
22
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
10.1093/bioinformatics/bth490. 15377507
-
RDP2: recombination detection and analysis from sequence alignments. DP Martin C Williamson D Posada, Bioinformatics 2005 21 260 262 10.1093/bioinformatics/bth490 15377507
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
23
-
-
0037100683
-
Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae
-
12136097. 10.1093/nar/gkf418
-
Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae. JA Thanassi SL Hartman-Neumann TJ Dougherty BA Dougherty MJ Pucci, Nucleic Acid Res 2002 30 3152 3162 12136097 10.1093/nar/gkf418
-
(2002)
Nucleic Acid Res
, vol.30
, pp. 3152-3162
-
-
Thanassi, J.A.1
Hartman-Neumann, S.L.2
Dougherty, T.J.3
Dougherty, B.A.4
Pucci, M.J.5
-
24
-
-
0033053646
-
A response regulator that represses transcription of several virulence operons in the group a Streptococcus
-
10368137
-
A response regulator that represses transcription of several virulence operons in the group A Streptococcus. MJ Federle KS McIver JR Scott, J Bacteriol 1999 181 3649 3657 10368137
-
(1999)
J Bacteriol
, vol.181
, pp. 3649-3657
-
-
Federle, M.J.1
McIver, K.S.2
Scott, J.R.3
-
25
-
-
0037108912
-
Virulence control in group a Streptococcus by a two-component gene regulatory system: Global expression profiling and in vivo infection modeling
-
12370433. 10.1073/pnas.202353699
-
Virulence control in group A Streptococcus by a two-component gene regulatory system: Global expression profiling and in vivo infection modeling. MR Graham LM Smoot CA Lux Migliaccio K Virtaneva DE Sturdevant SF Porcella MJ Federle GJ Adams JR Scott JM Musser, Proc Natl Acad Sci USA 2002 99 13855 13860 12370433 10.1073/pnas.202353699
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 13855-13860
-
-
Graham, M.R.1
Smoot, L.M.2
Lux Migliaccio, C.A.3
Virtaneva, K.4
Sturdevant, D.E.5
Porcella, S.F.6
Federle, M.J.7
Adams, G.J.8
Scott, J.R.9
Musser, J.M.10
-
26
-
-
0040370656
-
2-macroglobulin
-
10.1074/jbc.274.22.15336. 10336419
-
2-macroglobulin. M Rasmussen H-P Müller L Björck, J Biol Chem 1999 274 15336 15344 10.1074/jbc.274.22. 15336 10336419
-
(1999)
J Biol Chem
, vol.274
, pp. 15336-15344
-
-
Rasmussen, M.1
Müller, H.-P.2
Björck, L.3
-
27
-
-
0037864290
-
2-macroglobulin- binding protein to bacterial virulence in a mouse skin model of group a streptococcal infection
-
10.1086/375029. 12751026
-
2-macroglobulin- binding protein to bacterial virulence in a mouse skin model of group A streptococcal infection. AW Toppel M Rasmussen M Rohde E Medina GS Chhatwal, J Infect Dis 2003 187 1694 1703 10.1086/375029 12751026
-
(2003)
J Infect Dis
, vol.187
, pp. 1694-1703
-
-
Toppel, A.W.1
Rasmussen, M.2
Rohde, M.3
Medina, E.4
Chhatwal, G.S.5
-
28
-
-
0036892170
-
EndoS and SpeB from Streptococcus pyogenes inhibit immunoglobulin- mediated opsonophagocytosis
-
12438337. 10.1128/IAI.70.12.6646-6651.2002
-
EndoS and SpeB from Streptococcus pyogenes inhibit immunoglobulin- mediated opsonophagocytosis. M Collin MD Svensson AG Sjöholm JC Jensenius U Sjöbring A Olsén, Infect Immun 2002 70 6646 6651 12438337 10.1128/IAI.70.12.6646-6651.2002
-
(2002)
Infect Immun
, vol.70
, pp. 6646-6651
-
-
Collin, M.1
Svensson, M.D.2
Sjöholm, A.G.3
Jensenius, J.C.4
Sjöbring, U.5
Olsén, A.6
-
29
-
-
0035875889
-
EndoS, a novel secreted protein from Streptococcus pyogenes with endoglycosidase activity on human IgG
-
10.1093/emboj/20.12.3046
-
EndoS, a novel secreted protein from Streptococcus pyogenes with endoglycosidase activity on human IgG. M Collin A Olsén, EMBO 2001 20 3046 3055 10.1093/emboj/20.12.3046
-
(2001)
EMBO
, vol.20
, pp. 3046-3055
-
-
Collin, M.1
Olsén, A.2
-
30
-
-
0034773523
-
Effect of SpeB and EndoS from Streptococcus pyogenes on human immunoglobulins
-
11598100. 10.1128/IAI.69.11.7187-7189.2001
-
Effect of SpeB and EndoS from Streptococcus pyogenes on human immunoglobulins. M Collin A Olsén, Infect Immun 2001 69 7187 7189 11598100 10.1128/IAI.69.11.7187-7189.2001
-
(2001)
Infect Immun
, vol.69
, pp. 7187-7189
-
-
Collin, M.1
Olsén, A.2
-
31
-
-
29644438454
-
IdeS, a highly specific immunoglobulin G (IgG)-cleaving enzyme from Streptococcus pyogenes, is inhibited by specific IgG antibodies generated during infection
-
16369006. 10.1128/IAI.74.1.497-503.2006
-
IdeS, a highly specific immunoglobulin G (IgG)-cleaving enzyme from Streptococcus pyogenes, is inhibited by specific IgG antibodies generated during infection. P Åkesson L Moritz M Truedsson B Christensson U von Pawel-Rammingen, Infect Immun 2006 74 497 503 16369006 10.1128/IAI.74.1.497-503. 2006
-
(2006)
Infect Immun
, vol.74
, pp. 497-503
-
-
Åkesson, P.1
Moritz, L.2
Truedsson, M.3
Christensson, B.4
Von Pawel-Rammingen, U.5
-
32
-
-
0038649846
-
Effect of heat shock and mutations in clpL and clpP on virulence gene expression in Streptococcus pneumoniae
-
12819057. 10.1128/IAI.71.7.3757-3765.2003
-
Effect of heat shock and mutations in clpL and clpP on virulence gene expression in Streptococcus pneumoniae. H-Y Kwon S-W Kim M-H Choi AD Ogunniyi JC Paton S-H Park S-N Pyo D-K Rhee, Infect Immun 2003 71 3757 3765 12819057 10.1128/IAI.71.7.3757-3765.2003
-
(2003)
Infect Immun
, vol.71
, pp. 3757-3765
-
-
Kwon, H.-Y.1
Kim, S.-W.2
Choi, M.-H.3
Ogunniyi, A.D.4
Paton, J.C.5
Park, S.-H.6
Pyo, S.-N.7
Rhee, D.-K.8
-
33
-
-
4644372119
-
The ClpP protease of Streptococcus pneumoniae modulates virulence gene expression and protects against fatal pneumococcal challenge
-
15385462. 10.1128/IAI.72.10.5646-5653.2004
-
The ClpP protease of Streptococcus pneumoniae modulates virulence gene expression and protects against fatal pneumococcal challenge. H-Y Kwon AD Ogunniyi M-H Choi S-N Pyo D-K Rhee JC Paton, Infect Immun 2004 72 5646 5653 15385462 10.1128/IAI.72.10.5646-5653.2004
-
(2004)
Infect Immun
, vol.72
, pp. 5646-5653
-
-
Kwon, H.-Y.1
Ogunniyi, A.D.2
Choi, M.-H.3
Pyo, S.-N.4
Rhee, D.-K.5
Paton, J.C.6
-
34
-
-
12844281219
-
Contribution of the ATP-dependent protease ClpCP to the autolysis and virulence of Streptococcus pneumoniae
-
15664911. 10.1128/IAI.73.2.730-740.2005
-
Contribution of the ATP-dependent protease ClpCP to the autolysis and virulence of Streptococcus pneumoniae. YM Ibrahim AR Kerr NA Silva TJ Mitchell, Infect Immun 2005 73 730 740 15664911 10.1128/IAI.73.2.730-740.2005
-
(2005)
Infect Immun
, vol.73
, pp. 730-740
-
-
Ibrahim, Y.M.1
Kerr, A.R.2
Silva, N.A.3
Mitchell, T.J.4
-
35
-
-
0033118230
-
Regulation by proteolysis: Developmental switches
-
10.1016/S1369-5274(99)80025-3. 10322171
-
Regulation by proteolysis: developmental switches. S Gottesman, Curr Opin Microbiol 1999 2 142 147 10.1016/S1369-5274(99)80025-3 10322171
-
(1999)
Curr Opin Microbiol
, vol.2
, pp. 142-147
-
-
Gottesman, S.1
-
36
-
-
0033520987
-
Posttranslational quality control: Folding, refolding, and degrading proteins
-
10.1126/science.286.5446.1888. 10583944
-
Posttranslational quality control: folding, refolding, and degrading proteins. S Wickner MR Maurizi S Gottesman, Science 1999 286 1888 1893 10.1126/science.286.5446.1888 10583944
-
(1999)
Science
, vol.286
, pp. 1888-1893
-
-
Wickner, S.1
Maurizi, M.R.2
Gottesman, S.3
-
37
-
-
0033852411
-
Regulation of growth inhibition at high temperature, autolysis, transformation and adherence in Streptococcus pneumoniae by clpC
-
10.1046/j.1365-2958.2000.02011.x. 10972795
-
Regulation of growth inhibition at high temperature, autolysis, transformation and adherence in Streptococcus pneumoniae by clpC. E Charpentier R Novak E Tuomanen, Mol Microbiol 2000 37 717 726 10.1046/j.1365-2958.2000. 02011.x 10972795
-
(2000)
Mol Microbiol
, vol.37
, pp. 717-726
-
-
Charpentier, E.1
Novak, R.2
Tuomanen, E.3
-
38
-
-
0031740873
-
Large-scale identification of virulence genes from Streptococcus pneumoniae
-
9826334
-
Large-scale identification of virulence genes from Streptococcus pneumoniae. A Polissi A Pontiggia G Fager M Altieri H Mottl L Ferrari D Simon, Infect Immun 1998 66 5620 5629 9826334
-
(1998)
Infect Immun
, vol.66
, pp. 5620-5629
-
-
Polissi, A.1
Pontiggia, A.2
Fager, G.3
Altieri, M.4
Mottl, H.5
Ferrari, L.6
Simon, D.7
-
39
-
-
0033988501
-
Role of PriA in replication fork reactivation in Escherichia coli
-
10613856
-
Role of PriA in replication fork reactivation in Escherichia coli. SJ Sandler KJ Marians, J Bacteriol 2000 182 9 13 10613856
-
(2000)
J Bacteriol
, vol.182
, pp. 9-13
-
-
Sandler, S.J.1
Marians, K.J.2
-
40
-
-
0035902591
-
Rescue of stalled replication forks by RecG: Simultaneous translocation on the leading and lagging strand templates supports an active DNA unwinding model of fork reversal and Holliday junction formation
-
11459957. 10.1073/pnas.111008698
-
Rescue of stalled replication forks by RecG: Simultaneous translocation on the leading and lagging strand templates supports an active DNA unwinding model of fork reversal and Holliday junction formation. P McGlynn RG Lloyd, Proc Natl Acad Sci USA 2001 98 8227 9234 11459957 10.1073/pnas.111008698
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 8227-9234
-
-
McGlynn, P.1
Lloyd, R.G.2
-
41
-
-
0028910565
-
DNA repair is more important than catalase for Salmonella virulence in mice
-
7883952
-
DNA repair is more important than catalase for Salmonella virulence in mice. NA Buchmeier SJ Libby Y Xu PC Loewen J Switala DG Guiney FC Fang, J Clin Invest 1995 95 1047 1053 7883952
-
(1995)
J Clin Invest
, vol.95
, pp. 1047-1053
-
-
Buchmeier, N.A.1
Libby, S.J.2
Xu, Y.3
Loewen, P.C.4
Switala, J.5
Guiney, D.G.6
Fang, F.C.7
-
42
-
-
14044278191
-
DNA base excision repair potentiates the protective effect of Salmonella Pathogenicity island 2 within macrophages
-
10.1099/mic.0.27555-0
-
DNA base excision repair potentiates the protective effect of Salmonella Pathogenicity island 2 within macrophages. AE Savarnapanya MA Stein, Microbiol 2005 151 557 567 10.1099/mic.0.27555-0
-
(2005)
Microbiol
, vol.151
, pp. 557-567
-
-
Savarnapanya, A.E.1
Stein, M.A.2
-
43
-
-
0032582794
-
RuvAB acts at arrested replication forks
-
10.1016/S0092-8674(00)81772-9. 9814711
-
RuvAB acts at arrested replication forks. M Seigneur V Bidnenko SD Ehrlich B Michel, Cell 1998 95 419 430 10.1016/S0092-8674(00)81772-9 9814711
-
(1998)
Cell
, vol.95
, pp. 419-430
-
-
Seigneur, M.1
Bidnenko, V.2
Ehrlich, S.D.3
Michel, B.4
-
44
-
-
7744228869
-
Effect of host species on recG phenotypes in Helicobacter pylori and Escherichia coli
-
15516585. 10.1128/JB.186.22.7704-7713.2004
-
Effect of host species on recG phenotypes in Helicobacter pylori and Escherichia coli. J Kang D Tavakoli A Tschumi RA Aras MJ Blaser, J Bacteriol 2004 186 7704 7713 15516585 10.1128/JB.186.22.7704-7713.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 7704-7713
-
-
Kang, J.1
Tavakoli, D.2
Tschumi, A.3
Aras, R.A.4
Blaser, M.J.5
-
45
-
-
13244268247
-
Regulation of virulence by a two-component system in group B Streptococcus
-
15659687. 10.1128/JB.187.3.1105-1113.2005
-
Regulation of virulence by a two-component system in group B Streptococcus. S-M Jiang MJ Cieslewicz DL Kasper MR Wessels, J Bacteriol 2005 187 1105 1113 15659687 10.1128/JB.187.3.1105-1113.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 1105-1113
-
-
Jiang, S.-M.1
Cieslewicz, M.J.2
Kasper, D.L.3
Wessels, M.R.4
-
46
-
-
0037214390
-
The Streptococcus pneumoniae cia regulon: CiaR target sites and transcription profile analysis
-
12486041. 10.1128/JB.185.1.60-70.2003
-
The Streptococcus pneumoniae cia regulon: CiaR target sites and transcription profile analysis. T Mascher D Zähner M Merai N Balmelle AB de Saizieu R Hakenbeck, J Bacteriol 2003 185 60 70 12486041 10.1128/JB.185.1.60- 70.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 60-70
-
-
Mascher, T.1
Zähner, D.2
Merai, M.3
Balmelle, N.4
De Saizieu, A.B.5
Hakenbeck, R.6
-
47
-
-
0037452582
-
Genome-wide protective response used by group a Streptococcus to evade destruction by human polymorphonuclear leukocytes
-
12574517. 10.1073/pnas.0337370100
-
Genome-wide protective response used by group A Streptococcus to evade destruction by human polymorphonuclear leukocytes. JM Voyich DE Sturdevant KR Braughton SD Kobayashi B Lei K Virtaneva DW Sorward JM Musser FR DeLeo, Proc Natl Acad Sci USA 2003 100 1996 2001 12574517 10.1073/pnas.0337370100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1996-2001
-
-
Voyich, J.M.1
Sturdevant, D.E.2
Braughton, K.R.3
Kobayashi, S.D.4
Lei, B.5
Virtaneva, K.6
Sorward, D.W.7
Musser, J.M.8
Deleo, F.R.9
-
48
-
-
0036899166
-
Biological and biomedical implications of the co-evolution of pathogens and their hosts
-
10.1038/ng1202-569. 12457190
-
Biological and biomedical implications of the co-evolution of pathogens and their hosts. ME Woolhouse JP Webster E Domingo B Charlesworth BR Levin, Nat Genet 2002 32 569 577 10.1038/ng1202-569 12457190
-
(2002)
Nat Genet
, vol.32
, pp. 569-577
-
-
Woolhouse, M.E.1
Webster, J.P.2
Domingo, E.3
Charlesworth, B.4
Levin, B.R.5
-
49
-
-
12344283074
-
Determinants of adaptive evolution at the molecular level: The extended complexity hypothesis
-
10.1093/molbev/msi006. 15483330
-
Determinants of adaptive evolution at the molecular level: the extended complexity hypothesis. S Aris-Brosou, Mol Biol Evol 2005 22 200 209 10.1093/molbev/msi006 15483330
-
(2005)
Mol Biol Evol
, vol.22
, pp. 200-209
-
-
Aris-Brosou, S.1
-
50
-
-
0036175152
-
Differential fluorescence induction analysis of Streptococcus pneumoniae identifies genes involved in pathogenesis
-
11854229. 10.1128/IAI.70.3.1422-1433.2002
-
Differential fluorescence induction analysis of Streptococcus pneumoniae identifies genes involved in pathogenesis. A Marra J Asundi M Bartilson S Lawson F Fang J Christine C Wiesner D Brigham WP Schneider AE Hromockyj, Infect Immun 2002 70 1422 1433 11854229 10.1128/IAI.70.3.1422-1433.2002
-
(2002)
Infect Immun
, vol.70
, pp. 1422-1433
-
-
Marra, A.1
Asundi, J.2
Bartilson, M.3
Lawson, S.4
Fang, F.5
Christine, J.6
Wiesner, C.7
Brigham, D.8
Schneider, W.P.9
Hromockyj, A.E.10
-
51
-
-
0036047758
-
Large-scale identification of serotype 4 Streptococcus pneumoniae virulence factors
-
Large-scale identification of serotype 4 Streptococcus pneumoniae virulence factors. DL Hava A Camilli, Mol Microbiol 2002 45 1390 1405
-
(2002)
Mol Microbiol
, vol.45
, pp. 1390-1405
-
-
Hava, D.L.1
Camilli, A.2
-
53
-
-
14544290856
-
T-Coffee: A novel method for multiple sequence alignments
-
T-Coffee: A novel method for multiple sequence alignments. C Notredame D Higgins J Heringa, J Mol Biol 2000 340 385 395
-
(2000)
J Mol Biol
, vol.340
, pp. 385-395
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
55
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
9254330
-
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. O Gascuel, Mol Biol Evol 1997 14 685 695 9254330
-
(1997)
Mol Biol Evol
, vol.14
, pp. 685-695
-
-
Gascuel, O.1
-
56
-
-
0033639150
-
Statistical methods for detection molecular adaptation
-
10.1016/S0169-5347(00)01994-7. 11114436
-
Statistical methods for detection molecular adaptation. Z Yang JP Bielawski, Trends Ecol Evol 2000 15 496 503 10.1016/S0169-5347(00)01994-7 11114436
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 496-503
-
-
Yang, Z.1
Bielawski, J.P.2
-
57
-
-
0031972161
-
Likelihood models for detecting positive selected amino acid sites and application to the HIV-1
-
9539414
-
Likelihood models for detecting positive selected amino acid sites and application to the HIV-1. R Nielsen Z Yang, Genetics 1998 148 929 936 9539414
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
58
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
10790415
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites. Z Yang HR Nielsen N Goldman AMK Pedersen, Genetics 2000 155 431 449 10790415
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, H.R.2
Goldman, N.3
Pedersen, A.M.K.4
-
59
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
10.1093/molbev/msi097. 15689528
-
Bayes empirical bayes inference of amino acid sites under positive selection. Z Yang WSW Wong R Nielsen, Mol Biol Evol 2005 22 1107 1118 10.1093/molbev/msi097 15689528
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
60
-
-
0035836659
-
Complete genome sequence of an M1 strain of Streptococcus pyogenes
-
11296296. 10.1073/pnas.071559398
-
Complete genome sequence of an M1 strain of Streptococcus pyogenes. JJ Ferretti WM McShan D Ajdic DJ Savic G Savic K Lyon C Primeaux S Sezate AN Suvorov S Kenton HS Lai SP Lin Y Qian HG Jia FZ Najar Q Ren H Ahu L Song J White Z Yuan SW Clifton BA Roe R McLaughlin, Proc Natl Acad Sci USA 2001 98 4658 4663 11296296 10.1073/pnas.071559398
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4658-4663
-
-
Ferretti, J.J.1
McShan, W.M.2
Ajdic, D.3
Savic, D.J.4
Savic, G.5
Lyon, K.6
Primeaux, C.7
Sezate, S.8
Suvorov, A.N.9
Kenton, S.10
Lai, H.S.11
Lin, S.P.12
Qian, Y.13
Jia, H.G.14
Najar, F.Z.15
Ren, Q.16
Ahu, H.17
Song, L.18
White, J.19
Yuan, Z.20
Clifton, S.W.21
Roe, B.A.22
McLaughlin, R.23
more..
-
61
-
-
0037162559
-
Genome sequence of a serotype M3 strain of group a Streptococcus: Phage-encoded toxins, the high-virulence phenotype, and clone emergence
-
12122206. 10.1073/pnas.152298499
-
Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence. SB Beres GL Sylva KD Barbian B Lei JS Hoff ND Mammarella MY Liu JC Smoot SF Porcella LD Parkins DS Campbell TM Smith JK McCormick DY Leung PM Schlievert JM Musser, Proc Natl Acad Sci USA 2002 99 10078 83 12122206 10.1073/pnas.152298499
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 10078-83
-
-
Beres, S.B.1
Sylva, G.L.2
Barbian, K.D.3
Lei, B.4
Hoff, J.S.5
Mammarella, N.D.6
Liu, M.Y.7
Smoot, J.C.8
Porcella, S.F.9
Parkins, L.D.10
Campbell, D.S.11
Smith, T.M.12
McCormick, J.K.13
Leung, D.Y.14
Schlievert, P.M.15
Musser, J.M.16
-
62
-
-
0038480005
-
Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution
-
12799345. 10.1101/gr.1096703
-
Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution. I Nakagawa K Kurokawa A Yamashita M Nakata Y Tomiyasu N Okahashi S Kawabata K Yamazaki T Shiba T Yasunaga H Hayashi M Hattori S Hamada, Genome Res 2003 13 1042 55 12799345 10.1101/gr.1096703
-
(2003)
Genome Res
, vol.13
, pp. 1042-55
-
-
Nakagawa, I.1
Kurokawa, K.2
Yamashita, A.3
Nakata, M.4
Tomiyasu, Y.5
Okahashi, N.6
Kawabata, S.7
Yamazaki, K.8
Shiba, T.9
Yasunaga, T.10
Hayashi, H.11
Hattori, M.12
Hamada, S.13
-
63
-
-
3943087577
-
Progress toward characterization of the group a Streptococcus metagenome: Complete genome sequence of a macrolide-resistant serotype M6 strain
-
10.1086/422697. 15272401
-
Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. DJ Banks SF Porcella KD Barbian SB Beres LE Philips JM Voyich FR DeLeo JM Martin GA Somerville JM Musser, J Infect Dis 2004 190 727 738 10.1086/422697 15272401
-
(2004)
J Infect Dis
, vol.190
, pp. 727-738
-
-
Banks, D.J.1
Porcella, S.F.2
Barbian, K.D.3
Beres, S.B.4
Philips, L.E.5
Voyich, J.M.6
Deleo, F.R.7
Martin, J.M.8
Somerville, G.A.9
Musser, J.M.10
-
64
-
-
0037125989
-
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae
-
12200547. 10.1073/pnas.182380799
-
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. H Tettelin V Masignani MJ Cieslewicz JA Eisen S Peterson MR Wessels IT Paulsen KE Nelson I Margarit TD Read LC Madoff AM Wolf MJ Beanan LM Brinkac SC Daugherty RT DeBoy AS Durkin JF Kolonay R Madupu MR Lewis D Radune NB Fedorova D Scanlan H Khouri S Mulligan HA Carty RT Cline SE Van Aken J Gill M Scarselli M Mora ET Iacobini C Brettoni G Galli M Mariani F Vegni D Maione D Rinaudo R Rappuoli JL Telford DL Kasper G Grandi CM Fraser, Proc Natl Acad Sci USA 2002 99 12391 6 12200547 10.1073/pnas.182380799
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12391-6
-
-
Tettelin, H.1
Masignani, V.2
Cieslewicz, M.J.3
Eisen, J.A.4
Peterson, S.5
Wessels, M.R.6
Paulsen, I.T.7
Nelson, K.E.8
Margarit, I.9
Read, T.D.10
Madoff, L.C.11
Wolf, A.M.12
Beanan, M.J.13
Brinkac, L.M.14
Daugherty, S.C.15
Deboy, R.T.16
Durkin, A.S.17
Kolonay, J.F.18
Madupu, R.19
Lewis, M.R.20
Radune, D.21
Fedorova, N.B.22
Scanlan, D.23
Khouri, H.24
Mulligan, S.25
Carty, H.A.26
Cline, R.T.27
Van Aken, S.E.28
Gill, J.29
Scarselli, M.30
Mora, M.31
Iacobini, E.T.32
Brettoni, C.33
Galli, G.34
Mariani, M.35
Vegni, F.36
Maione, D.37
Rinaudo, D.38
Rappuoli, R.39
Telford, J.L.40
Kasper, D.L.41
Grandi, G.42
Fraser, C.M.43
more..
-
65
-
-
0034806849
-
Genome of the bacterium Streptococcus pneumoniae strain R6
-
11544234. 10.1128/JB.183.19.5709-5717.2001
-
Genome of the bacterium Streptococcus pneumoniae strain R6. J Hoskins WE Alborn Jr J Arnold LC Blaszczak S Burgett BS DeHoff ST Estrem L Fritz DJ Fu W Fuller C Geringer R Gilmour JS Glass H Lhoja AR Kraft RE Lagace DJ LeBlanc LN Lee EJ Lefkowitz J Lu P Matsushima SM McAhren M McHenney K McLeaster CW Mundy TI Nicas FH Norris M O'Gara RB Peery GT Robertsons P Rockey PM Sun ME Winkler Y Yang M Young-Bellido G Zhao CA Zook RH Baltz SR Jaskunas PR Rosteck Jr PL Skatrud JI Glass, J Bacteriol 2001 183 5709 5717 11544234 10.1128/JB.183.19. 5709-5717.2001
-
(2001)
J Bacteriol
, vol.183
, pp. 5709-5717
-
-
Hoskins, J.1
Alborn Jr., W.E.2
Arnold, J.3
Blaszczak, L.C.4
Burgett, S.5
Dehoff, B.S.6
Estrem, S.T.7
Fritz, L.8
Fu, D.J.9
Fuller, W.10
Geringer, C.11
Gilmour, R.12
Glass, J.S.13
Lhoja, H.14
Kraft, A.R.15
Lagace, R.E.16
Leblanc, D.J.17
Lee, L.N.18
Lefkowitz, E.J.19
Lu, J.20
Matsushima, P.21
McAhren, S.M.22
McHenney, M.23
McLeaster, K.24
Mundy, C.W.25
Nicas, T.I.26
Norris, F.H.27
O'Gara, M.28
Peery, R.B.29
Robertsons, G.T.30
Rockey, P.31
Sun, P.M.32
Winkler, M.E.33
Yang, Y.34
Young-Bellido, M.35
Zhao, G.36
Zook, C.A.37
Baltz, R.H.38
Jaskunas, S.R.39
Rosteck Jr., P.L.40
Skatrud, P.L.41
Glass, J.I.42
more..
-
66
-
-
0035919670
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
-
10.1126/science.1061217. 11463916
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. H Tettelin KE Nelson IT Paulsen JS Eisen TD Read S Peterson J Heidelberg RT DeBoy DH Haft RJ Dodson AS Durkin M Gwinn JF Kolonay WC Nelson JD Peterson LA Umayam O White SL Salzberg MR Lewis D Radune E Holtzapple H Khouri AM Wolf TR Utterback CL Hansen LA McDonald TV Feldblyum S Angiuoli T Dickinson EK Hickey IE Hold BJ Loftus F Yang HO Smith JC Venter BA Dougherty DA Morrison SK Hollingshead CM Fraser, Science 2001 293 498 506 10.1126/science.1061217 11463916
-
(2001)
Science
, vol.293
, pp. 498-506
-
-
Tettelin, H.1
Nelson, K.E.2
Paulsen, I.T.3
Eisen, J.S.4
Read, T.D.5
Peterson, S.6
Heidelberg, J.7
Deboy, R.T.8
Haft, D.H.9
Dodson, R.J.10
Durkin, A.S.11
Gwinn, M.12
Kolonay, J.F.13
Nelson, W.C.14
Peterson, J.D.15
Umayam, L.A.16
White, O.17
Salzberg, S.L.18
Lewis, M.R.19
Radune, D.20
Holtzapple, E.21
Khouri, H.22
Wolf, A.M.23
Utterback, T.R.24
Hansen, C.L.25
McDonald, L.A.26
Feldblyum, T.V.27
Angiuoli, S.28
Dickinson, T.29
Hickey, E.K.30
Hold, I.E.31
Loftus, B.J.32
Yang, F.33
Smith, H.O.34
Venter, J.C.35
Dougherty, B.A.36
Morrison, D.A.37
Hollingshead, S.K.38
Fraser, C.M.39
more..
-
67
-
-
0037195085
-
Genome sequence of Streptococcus mutan UA159, a carcinogenic dental pathogen
-
12397186. 10.1073/pnas.172501299
-
Genome sequence of Streptococcus mutan UA159, a carcinogenic dental pathogen. D Ajdic WM McShan RE McLaughlin G Savic J Chang MB Carson C jPrimeaux R Tian S Kenton H Jia S Lin Y Qian S Li H Zhu F Najar H Lai J White BA Roe JJ Ferretti, Proc Natl Acad Sci USA 2002 99 14434 9 12397186 10.1073/pnas.172501299
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14434-9
-
-
Ajdic, D.1
McShan, W.M.2
McLaughlin, R.E.3
Savic, G.4
Chang, J.5
Carson, M.B.6
Jprimeaux, C.7
Tian, R.8
Kenton, S.9
Jia, H.10
Lin, S.11
Qian, Y.12
Li, S.13
Zhu, H.14
Najar, F.15
Lai, H.16
White, J.17
Roe, B.A.18
Ferretti, J.J.19
-
68
-
-
19944414611
-
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
-
10.1038/nbt1034. 15583656
-
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. A Bolotin B Quinquis P Renault A Sorokin SD Ehrlich S Kulakauskas A Lapidus E Goltsman M Mazur GD Pusch M Fonstein R Overbeek N Kyprides B Purnelle D Prozzi K Ngui D Masuy F Hancy S Burteau M Boutry J Delcour A Goffeau P Hols, Nat Biotechnol 2004 22 1523 1524 10.1038/nbt1034 15583656
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1523-1524
-
-
Bolotin, A.1
Quinquis, B.2
Renault, P.3
Sorokin, A.4
Ehrlich, S.D.5
Kulakauskas, S.6
Lapidus, A.7
Goltsman, E.8
Mazur, M.9
Pusch, G.D.10
Fonstein, M.11
Overbeek, R.12
Kyprides, N.13
Purnelle, B.14
Prozzi, D.15
Ngui, K.16
Masuy, D.17
Hancy, F.18
Burteau, S.19
Boutry, M.20
Delcour, J.21
Goffeau, A.22
Hols, P.23
more..
-
69
-
-
33746296470
-
Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation
-
10.1016/j.gene.2006.04.024. 16797879
-
Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation. S Aris-Brosou JP Bielawski, Gene 2006 378 58 64 10.1016/j.gene.2006.04.024 16797879
-
(2006)
Gene
, vol.378
, pp. 58-64
-
-
Aris-Brosou, S.1
Bielawski, J.P.2
|