-
1
-
-
0031690080
-
Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families
-
Andrade, M. and Valencia, A. (1998) ‘Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families’, Bioinformatics, Vol. 14, pp.600–607.
-
(1998)
Bioinformatics
, vol.14
, pp. 600-607
-
-
Andrade, M.1
Valencia, A.2
-
2
-
-
0033034745
-
Automated genome sequence analysis and annotation
-
Andrade, M.A., Brown, N.P., Leroy, C., Hoersch, S., de Daruvar, A., Reich, C., Franchini, A., Tamames, J., Valencia, A., Ouzounis, C. and Sander, C. (1999) ‘Automated genome sequence analysis and annotation’, Bioinformatics, Vol. 15, pp.391–412.
-
(1999)
Bioinformatics
, vol.15
, pp. 391-412
-
-
Andrade, M.A.1
Brown, N.P.2
Leroy, C.3
Hoersch, S.4
de Daruvar, A.5
Reich, C.6
Franchini, A.7
Tamames, J.8
Valencia, A.9
Ouzounis, C.10
Sander, C.11
-
3
-
-
0025229345
-
The bond energy algorithm revisited
-
Arabie, P. and Hubert, L.J. (1990) ‘The bond energy algorithm revisited’, IEEE Transactions on Systems, Man, and Cybernetics, Vol. 20, pp.268–274.
-
(1990)
IEEE Transactions on Systems, Man, and Cybernetics
, vol.20
, pp. 268-274
-
-
Arabie, P.1
Hubert, L.J.2
-
4
-
-
0034766349
-
Mining functional information associated with expression arrays
-
Blaschke, C., Oliveros, J.C. and Valencia, A. (2001) ‘Mining functional information associated with expression arrays’, Funct. Integr. Genomics, Vol. 1, pp.256–268.
-
(2001)
Funct. Integr. Genomics
, vol.1
, pp. 256-268
-
-
Blaschke, C.1
Oliveros, J.C.2
Valencia, A.3
-
5
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
USA
-
Brown, M.P., Grundy, W.N., Lin, D., Cristianini, N., Sugnet, C.W., Furey, T.S., Ares Jr., M. and Haussler, D. (2000) ‘Knowledge-based analysis of microarray gene expression data by using support vector machines’, Proc. Natl. Acad. Sci., USA, Vol. 97, pp.262–267.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares, M.7
Haussler, D.8
-
6
-
-
0038017587
-
Mining microarray expression data by literature profiling
-
Chaussabel, D. and Sher, A. (2002) ‘Mining microarray expression data by literature profiling’, Genome Biology, Vol. 3, pp.1–16.
-
(2002)
Genome Biology
, vol.3
, pp. 1-16
-
-
Chaussabel, D.1
Sher, A.2
-
7
-
-
0002607026
-
Bayesian classification (autoclass): theory and results
-
Fayyad, U.M., Piatetsky-Shapiro, G., Smyth, P. and Uthurusamy, R. (Eds.)
-
Cheeseman, P. and Stutz, J. (1996) ‘Bayesian classification (autoclass): theory and results’, In Fayyad, U.M., Piatetsky-Shapiro, G., Smyth, P. and Uthurusamy, R. (Eds.): Advances in Knowledge Discovery and Data Mining, pp.153–180.
-
(1996)
Advances in Knowledge Discovery and Data Mining
, pp. 153-180
-
-
Cheeseman, P.1
Stutz, J.2
-
8
-
-
0043194165
-
Shrinkage-based similarity metric for cluster analysis of microarray data
-
USA
-
Cherepinsky, V., Feng, J., Rejali, M. and Mishra, B. (2003) ‘Shrinkage-based similarity metric for cluster analysis of microarray data’, Proc. Natl. Acad. Sci., USA, Vol. 100, pp.9668–9673.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 9668-9673
-
-
Cherepinsky, V.1
Feng, J.2
Rejali, M.3
Mishra, B.4
-
9
-
-
84989525001
-
Indexing by latent semantic analysis
-
Deerwester, S., Dumais, S.T., Furnas, G.W., Landauer, T.K. and Harshman, R. (1990) ‘Indexing by latent semantic analysis’, Journal of the American Society for Information Science, Vol. 41, pp.391–407.
-
(1990)
Journal of the American Society for Information Science
, vol.41
, pp. 391-407
-
-
Deerwester, S.1
Dumais, S.T.2
Furnas, G.W.3
Landauer, T.K.4
Harshman, R.5
-
10
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
USA
-
Eisen, M.B., Spellman, P.T., Brown, P.O. and Botstein, D. (1998) ‘Cluster analysis and display of genome-wide expression patterns’, Proc. Natl. Acsd. Sci., USA, Vol. 95, pp.14863–14868.
-
(1998)
Proc. Natl. Acsd. Sci.
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
12
-
-
0035108235
-
A hierarchical unsupervised growing neural network for clustering gene expression patterns
-
Herrero, J., Valencia, A. and Dopazo, J. (2001) ‘A hierarchical unsupervised growing neural network for clustering gene expression patterns’, Bioinformatics, Vol. 17, pp.126–136.
-
(2001)
Bioinformatics
, vol.17
, pp. 126-136
-
-
Herrero, J.1
Valencia, A.2
Dopazo, J.3
-
13
-
-
0035229817
-
Predicting gene function from gene expression and ontologies
-
Hvidsten, T.R., Komorowski, J., Sandvik, A.K. and Laegreid, A. (2001) ‘Predicting gene function from gene expression and ontologies’, Pacific Symposium on Biocomputing, Vol. 6, pp.299–310.
-
(2001)
Pacific Symposium on Biocomputing
, vol.6
, pp. 299-310
-
-
Hvidsten, T.R.1
Komorowski, J.2
Sandvik, A.K.3
Laegreid, A.4
-
14
-
-
84893405732
-
Data clustering: a review
-
Jain, A.K., Murty, M.N. and Flynn, P.J. (1999) ‘Data clustering: a review’, ACM Computing Surveys, Vol. 31, pp.264–323.
-
(1999)
ACM Computing Surveys
, vol.31
, pp. 264-323
-
-
Jain, A.K.1
Murty, M.N.2
Flynn, P.J.3
-
15
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
Jenssen, T.K., Laegreid, A., Komorowski, J. and Hovig, E. (2001) ‘A literature network of human genes for high-throughput analysis of gene expression’, Nature Genetics, Vol. 28, pp.21–28.
-
(2001)
Nature Genetics
, vol.28
, pp. 21-28
-
-
Jenssen, T.K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
16
-
-
84989380187
-
Methods of automatic term recognition-a review
-
Kageura, K. and Umino, B. (1996) ‘Methods of automatic term recognition-a review’, Terminology, Vol. 3, pp.259–289.
-
(1996)
Terminology
, vol.3
, pp. 259-289
-
-
Kageura, K.1
Umino, B.2
-
17
-
-
0347766407
-
MedMeSH summarizer: text mining for gene clusters
-
SDM 2002, 11-13 April
-
Kankar, P., Adak, S., Sarkar, A., Murari, K. and Sharma, G. (2002) ‘MedMeSH summarizer: text mining for gene clusters’, Proc. SIAM International Conference in Data Mining, SDM 2002, 11-13 April, pp.32–49.
-
(2002)
Proc. SIAM International Conference in Data Mining
, pp. 32-49
-
-
Kankar, P.1
Adak, S.2
Sarkar, A.3
Murari, K.4
Sharma, G.5
-
18
-
-
0008864273
-
-
PhD Dissertation, Dept. of Computer Science, Concordia Univ., Montreal, Quebec
-
Kegl, B. (2002) Principle Curves: Learning, Design, and Applications, PhD Dissertation, Dept. of Computer Science, Concordia Univ., Montreal, Quebec.
-
(2002)
Principle Curves: Learning, Design, and Applications
-
-
Kegl, B.1
-
20
-
-
70349438208
-
Text mining functional keywords associated with genes
-
Liu, Y., Brandon, M., Navathe, S., Dingledine, R., and Ciliax, B.J. (2004) ‘Text mining functional keywords associated with genes’, Medinfo, pp.292–296.
-
(2004)
Medinfo
, pp. 292-296
-
-
Liu, Y.1
Brandon, M.2
Navathe, S.3
Dingledine, R.4
Ciliax, B.J.5
-
21
-
-
19944381853
-
Text mining biomedical literature for discovering gene-to-gene relationships: a comparative study of algorithms
-
Liu, Y., Navathe, S.B., Pivoshenko, A., Civera, J., Dasigi, V., Ram, A., Ciliax, B.J. and Dingledine, R. (2005) ‘Text mining biomedical literature for discovering gene-to-gene relationships: a comparative study of algorithms’, IEEE/ACM Transaction on Computational Biology and Bioinformatics, Vol. 2, pp.62–76.
-
(2005)
IEEE/ACM Transaction on Computational Biology and Bioinformatics
, vol.2
, pp. 62-76
-
-
Liu, Y.1
Navathe, S.B.2
Pivoshenko, A.3
Civera, J.4
Dasigi, V.5
Ram, A.6
Ciliax, B.J.7
Dingledine, R.8
-
22
-
-
0035022821
-
Use of keyword hierarchies to interpret gene expression patterns
-
Masys, D.R., Welsh, J.B., Lynn Fink, J., Gribskov, M., Klacansky, I. and Corbeil, J. (2001) ‘Use of keyword hierarchies to interpret gene expression patterns’, Bioinformatics, Vol. 17, pp.319–26.
-
(2001)
Bioinformatics
, vol.17
, pp. 319-326
-
-
Masys, D.R.1
Welsh, J.B.2
Lynn Fink, J.3
Gribskov, M.4
Klacansky, I.5
Corbeil, J.6
-
23
-
-
0015397231
-
Problem decomposition and data reorganization by a clustering technique
-
McCormick, W.T., Schweitzer, P.J. and White, T.W. (1972) ‘Problem decomposition and data reorganization by a clustering technique’, Oper. Res., Vol. 20, pp.993–1009.
-
(1972)
Oper. Res.
, vol.20
, pp. 993-1009
-
-
McCormick, W.T.1
Schweitzer, P.J.2
White, T.W.3
-
24
-
-
1542299386
-
-
Technical Report no. 418, Department of Statistics, University of Washington
-
Meila, M. (2002) Comparing Clusterings, Technical Report no. 418, Department of Statistics, University of Washington.
-
(2002)
Comparing Clusterings
-
-
Meila, M.1
-
25
-
-
0021625744
-
Vertical partitioning algorithms for database design
-
Navathe, S.B., Ceri, S., Wiederhold, G. and Dou, J. (1984) ‘Vertical partitioning algorithms for database design’, ACM Trans. on Database Systems, Vol. 9, pp.680–710.
-
(1984)
ACM Trans. on Database Systems
, vol.9
, pp. 680-710
-
-
Navathe, S.B.1
Ceri, S.2
Wiederhold, G.3
Dou, J.4
-
26
-
-
84948481845
-
An algorithm for suffix stripping
-
Porter, M. (1980) ‘An algorithm for suffix stripping’, Program, Vol. 14, pp.130–137.
-
(1980)
Program
, vol.14
, pp. 130-137
-
-
Porter, M.1
-
27
-
-
0043163729
-
The computational analysis of scientific literature to define and recognize gene expression clusters
-
Raychaudhuri, S., Chang, T.J., Imam, F. and Altman, R.B. (2003) ‘The computational analysis of scientific literature to define and recognize gene expression clusters’, Nucleic Acids Research, Vol. 15, pp.4553–4560.
-
(2003)
Nucleic Acids Research
, vol.15
, pp. 4553-4560
-
-
Raychaudhuri, S.1
Chang, T.J.2
Imam, F.3
Altman, R.B.4
-
28
-
-
0036796319
-
Using Text analysis to identify functionally coherent gene groups
-
Raychaudhuri, S., Schutze, H. and Altman, R.B. (2002) ‘Using Text analysis to identify functionally coherent gene groups’, Genome Res., Vol. 12, pp.1582–1590.
-
(2002)
Genome Res.
, vol.12
, pp. 1582-1590
-
-
Raychaudhuri, S.1
Schutze, H.2
Altman, R.B.3
-
29
-
-
45549117987
-
Text-weighting approaches in automatic text retrieval
-
Salton, G. and Buckley, C. (1988) ‘Text-weighting approaches in automatic text retrieval’, Information Processing and Management, Vol. 24, pp.513–523.
-
(1988)
Information Processing and Management
, vol.24
, pp. 513-523
-
-
Salton, G.1
Buckley, C.2
-
30
-
-
2342428678
-
-
PhD Dissertation, Dept. Electric and Computer Eng., The University of Texas at Austin, Austin, Texas
-
Strehl, A. (2002) Relationship-based Clustering and Cluster Ensembles for High-dimensional Data Mining, PhD Dissertation, Dept. Electric and Computer Eng., The University of Texas at Austin, Austin, Texas.
-
(2002)
Relationship-based Clustering and Cluster Ensembles for High-dimensional Data Mining
-
-
Strehl, A.1
-
31
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation
-
USA
-
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E.S. and Golub, T.R. (1999) ‘Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation’, Proc. Nat. Acad. Sci., USA, Vol. 96, pp.2907–2912.
-
(1999)
Proc. Nat. Acad. Sci.
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
32
-
-
0032795144
-
MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling
-
Tanabe, L., Scherf, U., Smith, L.H., Lee, J.K., Hunter, L. and Weinstein, J.N. (1999) ‘MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling’, Biotechniques, Vol. 27, pp.1210–1214.
-
(1999)
Biotechniques
, vol.27
, pp. 1210-1214
-
-
Tanabe, L.1
Scherf, U.2
Smith, L.H.3
Lee, J.K.4
Hunter, L.5
Weinstein, J.N.6
-
33
-
-
0042863923
-
Analysis of gene expression data using self-organizing maps
-
Toronen, P., Kolehmainen, M., Wong, G. and Castren, E. (1999) ‘Analysis of gene expression data using self-organizing maps’, FEBSLetters, Vol. 451, pp.142–146.
-
(1999)
FEBSLetters
, vol.451
, pp. 142-146
-
-
Toronen, P.1
Kolehmainen, M.2
Wong, G.3
Castren, E.4
-
34
-
-
0141974934
-
EXCAVATOR: a computer program for efficiently mining gene expression data
-
Xu, Y., Olman, V. and Xu, D. (2003) ‘EXCAVATOR: a computer program for efficiently mining gene expression data’, Nucleic Acid Res., Vol. 31, pp.5582–5589.
-
(2003)
Nucleic Acid Res.
, vol.31
, pp. 5582-5589
-
-
Xu, Y.1
Olman, V.2
Xu, D.3
|