Automatic extraction of keywords from scientific text: Application to the knowledge domain of protein families

Bioinformatics

Volumn 14, Issue 7, 1998, Pages 600-607

  Andrade, Miguel A ^a,b   Valencia, Alfonso ^b  

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CARBONATE DEHYDRATASE; GUANOSINE TRIPHOSPHATASE;

ARTICLE; ATAXIA TELANGIECTASIA; BIOLOGY; DATA BASE; INTERNET; MEDICAL DOCUMENTATION; MEDICAL INFORMATION; PRIORITY JOURNAL; PROTEIN FAMILY; SCIENTIFIC LITERATURE;

EID: 0031690080     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.7.600     Document Type: Article

References (24)

1. Allen, J. (1994) Natural Language Understanding. Benjamin/Cummings, Redwood City, CA.
2. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
3. Bairoch, A. and Apweiler, R. (1997) The SWISS-PROT protein sequence data bank and its new supplement TrEMBL. Nucleic Acids Res., 25, 31-36.
4. Bairoch, A., Bucher, P. and Hofmann, K. (1997) The PROSITE database, its status in 1997. Nucleic Acids Res., 25, 217-221.
5. Berry, M.W., Dumais, S.T. and O'Brien, G.W. (1995) Using linear algebra for intelligent information retrieval. SIAM Rev., 37, 573-595.
6. Casari, G. et al. (1995) Challenging times for bioinformatics. Nature, 376, 647-648.
7. Cowie, J. and Lehnert, W. (1996) Information extraction. Commun. ACM, 39, 80-91.
8. Etzold, T., Ulyanov, A. and Argos, P. (1996) SRS: information retrieval system for molecular biology data banks. Methods Enzymol., 266, 114-128.
9. Gaasterland, T. and Sensen, C.W. (1996) Fully automated genome analysis that reflects user needs and preferences - a detailed introduction to the MAGPIE system architecture. Biochimie, 78, 302-310.
10. Guigó, R., Johansson, A. and Smith, T.F. (1991) Automatic evaluation of protein sequence functional patterns. Comput. Applic. Biosci., 7, 309-315.
11. Hobohm, U. and Sander, C. (1994) Enlarged representative set of protein structures. Protein Sci., 3, 522-524.
12. Holm, L. and Sander, C. (1998) Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics, 14, 423-429.
13. Jacobs, P.S. (1992) Text-based Intelligent Systems: Current Research and Practice in Information Extraction and Retrieval. Lawrence Erlbaum Associates, Hillsdale, USA.
14. Koonin, E.V., Tatusov, R.L. and Rudd, K.E. (1996) Protein sequence comparison at genome scale. Methods Enzymol., 266, 295-322.
15. Pearson, W. and Lipman, D. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad Sci. USA, 85, 2444-2448.
16. Reynar, J.C. and Ratnaparkhi, A. (1997) A maximum entropy approach to identifying sentence boundaries. In Proceedings of the 5th Conference on Applications of Natural Language Processing, Washington, DC, pp. 16-19.
17. Salton, G. (1989) Automatic Text Processing. Addison-Wesley Series in Computer Science. Addison-Wesley, Reading, MA.
18. Schneider, R., de Daruvar, A. and Sander, C. (1997) The HSSP database of protein structure-sequence alignments. Nucleic Acids Res., 25, 226-230.
19. Schuler, G.D., Epstein, J.A., Ohkawa, H. and Kans, J.A. (1996) Entrez: molecular biology database and retrieval system. Methods Enzymol., 266, 141-162.
20. Sonnhammer, E., Eddy, S. and Durbin, R. (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins, 28, 405-420.
21. Tamames, J., Ouzounis, C., Sander, C. and Valencia, A. (1996) Genomes with distinct functional composition. FEBS Lett., 389, 96-101.
22. Ulmschneider, J.E. and Doszkocs, T. (1983) A practical stemming algorithm for online search assistance. Online Rev., 7, 301-315.
23. Wilbur, W.J. and Coffee, L. (1994) The effectiveness of document neighboring in search enhancement. Inf. Process. Manage., 30, 253-266.
24. Zipf, G.K. (1935) The Psycho-Biology of Language. MIT Press (1968), Cambridge, MA.