메뉴 건너뛰기




Volumn 12, Issue 10, 2002, Pages 1582-1590

Using text analysis to identify functionally coherent gene groups

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE CLUSTER; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOMICS; PRIORITY JOURNAL; SCIENTIFIC LITERATURE; SCORING SYSTEM; SENSITIVITY AND SPECIFICITY; STATISTICAL ANALYSIS;

EID: 0036796319     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.116402     Document Type: Article
Times cited : (57)

References (33)
  • 3
    • 0030633417 scopus 로고    scopus 로고
    • Automatic annotation for biological sequences by extraction of keywords from MEDLINE abstracts. Development of a prototype system
    • Andrade, M.A. and Valencia, A. 1997. Automatic annotation for biological sequences by extraction of keywords from MEDLINE abstracts. Development of a prototype system. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5: 25-32.
    • (1997) Proc. Int. Conf. Intell. Syst. Mol. Biol , vol.5 , pp. 25-32
    • Andrade, M.A.1    Valencia, A.2
  • 5
    • 0032893084 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
    • Bairoch, A. and Apweiler, R. 1999. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. Nucleic Acids Res. 27: 49-54.
    • (1999) Nucleic Acids Res , vol.27 , pp. 49-54
    • Bairoch, A.1    Apweiler, R.2
  • 6
    • 0036088977 scopus 로고    scopus 로고
    • The Mouse Genome Database (MGD): The model organism database for the laboratory mouse
    • Blake, J.A., Richardson, J.E., Bult, C.J., Kadin, J.A., and Eppig, JT. 2002. The Mouse Genome Database (MGD): The model organism database for the laboratory mouse. Nucleic Acids Res. 30: 113-115.
    • (2002) Nucleic Acids Res , vol.30 , pp. 113-115
    • Blake, J.A.1    Richardson, J.E.2    Bult, C.J.3    Kadin, J.A.4    Eppig, J.T.5
  • 7
  • 8
    • 0035222129 scopus 로고    scopus 로고
    • Including biological literature improves homology search
    • Chang, J.T., Raychaudhuri, S., and Altman, R.B. 2001. Including biological literature improves homology search. Pac. Symp. Biocomput. 14: 374-383.
    • (2001) Pac. Symp. Biocomput , vol.14 , pp. 374-383
    • Chang, J.T.1    Raychaudhuri, S.2    Altman, R.B.3
  • 10
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen, M.B., Spellman, P.T., Brown, P.O., and Botstein, D. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. 95: 14863-14868.
    • (1998) Proc. Natl. Acad. Sci , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 11
    • 0032822429 scopus 로고    scopus 로고
    • Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries
    • Eisenhaber, F. and Bork, P. 1999. Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. Bioinformatics 15: 528-535.
    • (1999) Bioinformatics , vol.15 , pp. 528-535
    • Eisenhaber, F.1    Bork, P.2
  • 12
    • 0344417851 scopus 로고    scopus 로고
    • A novel method for automatic functional annotation of proteins
    • Fleischmann, W., Moller, S., Gateau, A., and Apweiler, R. 1999. A novel method for automatic functional annotation of proteins. Bioinformatics 15: 228-233.
    • (1999) Bioinformatics , vol.15 , pp. 228-233
    • Fleischmann, W.1    Moller, S.2    Gateau, A.3    Apweiler, R.4
  • 15
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • Jenssen, T.K., Laegreid, A., Komorowski, J., and Hovig, E. 2001. A literature network of human genes for high-throughput analysis of gene expression. Nat. Genet. 28: 21-28.
    • (2001) Nat. Genet , vol.28 , pp. 21-28
    • Jenssen, T.K.1    Laegreid, A.2    Komorowski, J.3    Hovig, E.4
  • 16
    • 0030608395 scopus 로고    scopus 로고
    • Structural and functional analyses of APG5, a gene involved in autophagy in yeast
    • Kametaka, S., Matsuura, A., Wada, Y., and Ohsumi, Y. 1996. Structural and functional analyses of APG5, a gene involved in autophagy in yeast. Gene 178: 139-143.
    • (1996) Gene , vol.178 , pp. 139-143
    • Kametaka, S.1    Matsuura, A.2    Wada, Y.3    Ohsumi, Y.4
  • 17
    • 0010963126 scopus 로고    scopus 로고
    • Learning Python (help for programmers). O'Reilly, Sebastopol, CA
    • Lutz, M. and Ascher, D. 1999. Learning Python (help for programmers). O'Reilly, Sebastopol, CA.
    • (1999)
    • Lutz, M.1    Ascher, D.2
  • 18
    • 0034020913 scopus 로고    scopus 로고
    • SAWTED: Structure assignment with text description-enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons
    • MacCallum, R.M., Kelley, L.A., and Sternberg, M.J. 2000. SAWTED: Structure assignment with text description-enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons. Bioinformatics 16: 125-129.
    • (2000) Bioinformatics , vol.16 , pp. 125-129
    • MacCallum, R.M.1    Kelley, L.A.2    Sternberg, M.J.3
  • 19
    • 0003612818 scopus 로고    scopus 로고
    • Foundations of statistical natural language
    • processing The MIT Press, Cambridge, MA
    • Manning, C.M. and Schütze, H. 1999. Foundations of statistical natural language processing. The MIT Press, Cambridge, MA.
    • (1999)
    • Manning, C.M.1    Schütze, H.2
  • 23
    • 0036144742 scopus 로고    scopus 로고
    • Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
    • Raychaudhuri, S., Chang, J.T., Sutphin, P.D., and Altman, R.B. 2002. Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Res. 12: 203-214.
    • (2002) Genome Res , vol.12 , pp. 203-214
    • Raychaudhuri, S.1    Chang, J.T.2    Sutphin, P.D.3    Altman, R.B.4
  • 25
    • 0004110133 scopus 로고    scopus 로고
    • Learning Perl
    • O'Reilly, Sebastopol, CA
    • Schwartz, R.L. and Christianson, T. 1997. Learning Perl. O'Reilly, Sebastopol, CA.
    • (1997)
    • Schwartz, R.L.1    Christianson, T.2
  • 27
    • 0036358850 scopus 로고    scopus 로고
    • Predicting the sub-cellular location of proteins from text using support vector machines
    • Stapley, B.J., Kelley, L.A., and Sternberg, M.J. 2002. Predicting the sub-cellular location of proteins from text using support vector machines. Pac. Symp. Biocomput. 7: 374-385.
    • (2002) Pac. Symp. Biocomput , vol.7 , pp. 374-385
    • Stapley, B.J.1    Kelley, L.A.2    Sternberg, M.J.3
  • 29
    • 0031694515 scopus 로고    scopus 로고
    • EUCLID: Automatic classification of proteins in functional classes by their database annotations
    • Tamames, J., Ouzounis, C., Casari, G., Sander, C., and Valencia, A. 1998. EUCLID: Automatic classification of proteins in functional classes by their database annotations. Bioinformatics 14: 542-543.
    • (1998) Bioinformatics , vol.14 , pp. 542-543
    • Tamames, J.1    Ouzounis, C.2    Casari, G.3    Sander, C.4    Valencia, A.5
  • 30
  • 31
    • 0029990006 scopus 로고    scopus 로고
    • Resolution of subunit interactions and cytoplasmic subcomplexes of the yeast vacuolar proton-translocating ATPase
    • Tomashek, J.J., Sonnenburg, J.L., Artimovich, J.M., and Klionsky, D.J. 1996. Resolution of subunit interactions and cytoplasmic subcomplexes of the yeast vacuolar proton-translocating ATPase. J. Biol. Chem. 271: 10397-10404.
    • (1996) J. Biol. Chem , vol.271 , pp. 10397-10404
    • Tomashek, J.J.1    Sonnenburg, J.L.2    Artimovich, J.M.3    Klionsky, D.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.