메뉴 건너뛰기




Volumn 31, Issue 19, 2003, Pages 5582-5589

EXCAVATOR: A computer program for efficiently mining gene expression data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; COMPUTER SYSTEM; CONTROLLED STUDY; DATA ANALYSIS; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENETIC ALGORITHM; INTERNET; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; ALGORITHM; ANIMAL; CLUSTER ANALYSIS; DNA MICROARRAY; EVALUATION; GENE; RAT; TIME;

EID: 0141974934     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg783     Document Type: Article
Times cited : (18)

References (28)
  • 2
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi,J.L., Iyer,V.R. and Brown,P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale, Science, 278, 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 4
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
    • Tamayo,P., Slonim,D., Mesirov,J., Zhu,Q., Dmitrovsky,E., Lander,E.S. and Golub,T.R. (1999) Interpreting gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc. Natl Acad. Sci. USA, 96, 2907-2912.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Dmitrovsky, E.5    Lander, E.S.6    Golub, T.R.7
  • 7
    • 0035021690 scopus 로고    scopus 로고
    • J-Express: Exploring gene expression data using Java
    • Dysvik,B. and Jonassen,I. (2001) J-Express: exploring gene expression data using Java. Bioinformatics, 17, 369-370.
    • (2001) Bioinformatics , vol.17 , pp. 369-370
    • Dysvik, B.1    Jonassen, I.2
  • 8
    • 0036169031 scopus 로고    scopus 로고
    • Genesis: Cluster analysis of microarray data
    • Sturn,A., Quackenbush,J. and Trajanoski,Z. (2002) Genesis: cluster analysis of microarray data. Bioinformatics, 18, 207-208.
    • (2002) Bioinformatics , vol.18 , pp. 207-208
    • Sturn, A.1    Quackenbush, J.2    Trajanoski, Z.3
  • 11
    • 0034800371 scopus 로고    scopus 로고
    • Principal component analysis for clustering gene expression data
    • Yeung,K.Y. and Ruzzo,W.L. (2001) Principal component analysis for clustering gene expression data. Bioinformatics, 17, 763-774.
    • (2001) Bioinformatics , vol.17 , pp. 763-774
    • Yeung, K.Y.1    Ruzzo, W.L.2
  • 12
    • 0035999974 scopus 로고    scopus 로고
    • Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees
    • Xu,Y., Olman,V. and Xu,D. (2002) Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics, 18, 526-535.
    • (2002) Bioinformatics , vol.18 , pp. 526-535
    • Xu, Y.1    Olman, V.2    Xu, D.3
  • 13
    • 0002726668 scopus 로고
    • On the history of the minimum spanning tree problem
    • Graham,R.L. and Hell,P. (1985) On the history of the minimum spanning tree problem. Ann. Hist. Comput., 7, 43-57.
    • (1985) Ann. Hist. Comput. , vol.7 , pp. 43-57
    • Graham, R.L.1    Hell, P.2
  • 14
    • 0035755959 scopus 로고    scopus 로고
    • Minimum spanning trees for gene expression data clustering
    • Miyano,S., Shamir,R. and Takagi,T. (eds), Proceedings of the 12th International Conference on Genome Informatics (GIW). Universal Academy Press, Tokyo, Japan
    • Xu,Y., Olman,V. and Xu,D. (2001) Minimum spanning trees for gene expression data clustering. In Miyano,S., Shamir,R. and Takagi,T. (eds), Proceedings of the 12th International Conference on Genome Informatics (GIW). Universal Academy Press, Tokyo, Japan, pp. 24-33.
    • (2001) , pp. 24-33
    • Xu, Y.1    Olman, V.2    Xu, D.3
  • 15
    • 85013476876 scopus 로고    scopus 로고
    • Solving data clustering problem as a string search problem
    • Bozdogan,H. (ed.), Proceedings of the Conference on Statistical Data Mining and Knowledge Discovery. Chapman & Hall/CRC, Boca Raton, FL
    • Olman,V., Xu,D. and Xu,Y. (2003) Solving data clustering problem as a string search problem. In Bozdogan,H. (ed.), Proceedings of the Conference on Statistical Data Mining and Knowledge Discovery. Chapman & Hall/CRC, Boca Raton, FL, pp. 417-434.
    • (2003) , pp. 417-434
    • Olman, V.1    Xu, D.2    Xu, Y.3
  • 16
    • 0003570960 scopus 로고
    • Implementing Discrete Mathematics: Combinatorics and Graph Theory with Mathematica
    • Addison-Wesley, Reading, MA
    • Skiena,S. (1990) Implementing Discrete Mathematics: Combinatorics and Graph Theory with Mathematica. Addison-Wesley, Reading, MA.
    • (1990)
    • Skiena, S.1
  • 18
    • 0043130613 scopus 로고    scopus 로고
    • Identifications of regulatory binding sites using minimum spanning trees
    • Proceedings of the 2003 Pacific Symposium on Biocomputing (PSB). World Scientific Pub. Co., Lihue, Hawaii
    • Olman,V., Xu,D. and Xu,Y. (2003) Identifications of regulatory binding sites using minimum spanning trees. In Proceedings of the 2003 Pacific Symposium on Biocomputing (PSB). World Scientific Pub. Co., Lihue, Hawaii, pp. 327-338.
    • (2003) , pp. 327-338
    • Olman, V.1    Xu, D.2    Xu, Y.3
  • 19
    • 0345614410 scopus 로고    scopus 로고
    • CUBIC: Identifications of regulatory binding sites through data clustering
    • Olman,V., Xu,D. and Xu,Y. (2003) CUBIC: identifications of regulatory binding sites through data clustering. J. Bioinform. Comput. Biol., 1, 21-40.
    • (2003) J. Bioinform. Comput. Biol. , vol.1 , pp. 21-40
    • Olman, V.1    Xu, D.2    Xu, Y.3
  • 20
    • 84911584312 scopus 로고
    • Shortest connection networks and some generalizations
    • Prim,R.C. (1957) Shortest connection networks and some generalizations. Bell Syst. Tech. J., 36, 1389-1401.
    • (1957) Bell. Syst. Tech. J. , vol.36 , pp. 1389-1401
    • Prim, R.C.1
  • 24
    • 0035024021 scopus 로고    scopus 로고
    • Validating clustering for gene expression data
    • Yeung,K.Y., Haynor,D.R. and Ruzzo,W.L. (2001) Validating clustering for gene expression data. Bioinformatics, 17, 309-318.
    • (2001) Bioinformatics , vol.17 , pp. 309-318
    • Yeung, K.Y.1    Haynor, D.R.2    Ruzzo, W.L.3
  • 25
    • 0003421415 scopus 로고
    • The Jackknife, the Bootstrap and Other Resampling Plans
    • Society for Industrial and Applied Mathematics, Philadelphia, PA
    • Efron,B. (1982) The Jackknife, the Bootstrap and Other Resampling Plans. Society for Industrial and Applied Mathematics, Philadelphia, PA.
    • (1982)
    • Efron, B.1
  • 27
    • 0025764225 scopus 로고
    • A general approach to the isolation of cell cycle-regulated genes in the budding yeast, Saccharomyces cerevisiae
    • Price,C., Nasmyth,K. and Schuster,T. (1991) A general approach to the isolation of cell cycle-regulated genes in the budding yeast, Saccharomyces cerevisiae. J. Mol. Biol., 218, 543-556.
    • (1991) J. Mol. Biol. , vol.218 , pp. 543-556
    • Price, C.1    Nasmyth, K.2    Schuster, T.3
  • 28
    • 0345614406 scopus 로고    scopus 로고
    • A computational study on the signal transduction pathway for amino acid and peptide transport in yeast: Bridging the gap between high-throughput data and traditional biology
    • Chen,Y., Liu,Y., Goldstein,K.M., Becker,J.M., Xu,Y. and Xu,D. (2003) A computational study on the signal transduction pathway for amino acid and peptide transport in yeast: bridging the gap between high-throughput data and traditional biology. Appl. Genomics Proteomics, 2, 43-50.
    • (2003) Appl. Genomics Proteomics , vol.2 , pp. 43-50
    • Chen, Y.1    Liu, Y.2    Goldstein, K.M.3    Becker, J.M.4    Xu, Y.5    Xu, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.