메뉴 건너뛰기




Volumn 65, Issue 2, 2007, Pages 119-123

Evolutionary analysis for functional divergence of the toll-like receptor gene family and altered functional constraints

Author keywords

Functional divergence; Gene duplication; Phylogenetic tree; Toll like receptor

Indexed keywords

AMINO ACID; LEUCINE; TOLL LIKE RECEPTOR; TOLL LIKE RECEPTOR 1;

EID: 34548534411     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-005-0008-4     Document Type: Article
Times cited : (42)

References (26)
  • 1
    • 0034886143 scopus 로고    scopus 로고
    • Toll-like receptors: Critical proteins linking innate and acquired immunity
    • Akira S, Takeda K, Kaisho T (2001) Toll-like receptors: critical proteins linking innate and acquired immunity. Nat Immunol 2:675-680
    • (2001) Nat Immunol , vol.2 , pp. 675-680
    • Akira, S.1    Takeda, K.2    Kaisho, T.3
  • 3
    • 0029587166 scopus 로고
    • A method to predict functional residues in proteins
    • Casari G, Sander C, Valencia A (1995) A method to predict functional residues in proteins. Nat Struct Biol 2:171-178
    • (1995) Nat Struct Biol , vol.2 , pp. 171-178
    • Casari, G.1    Sander, C.2    Valencia, A.3
  • 4
    • 0036606898 scopus 로고    scopus 로고
    • Predicting functional divergence in protein evolution by site-specific rate shifts
    • Gaucher EA, Gu X, Miyamoto MM, Benner SA (2002) Predicting functional divergence in protein evolution by site-specific rate shifts. Trends Biochem Sci 27:315-321
    • (2002) Trends Biochem Sci , vol.27 , pp. 315-321
    • Gaucher, E.A.1    Gu, X.2    Miyamoto, M.M.3    Benner, S.A.4
  • 5
    • 0035895207 scopus 로고    scopus 로고
    • Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors
    • Gaucher EA, Miyamoto MM, Benner SA (2001) Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors. Proc Natl Acad Sci USA 98:548-552
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 548-552
    • Gaucher, E.A.1    Miyamoto, M.M.2    Benner, S.A.3
  • 6
    • 0036107253 scopus 로고    scopus 로고
    • Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes
    • Gu J, Wang Y, Gu X (2002) Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes. J Mol Evol 54:725-733
    • (2002) J Mol Evol , vol.54 , pp. 725-733
    • Gu, J.1    Wang, Y.2    Gu, X.3
  • 7
    • 0032728408 scopus 로고    scopus 로고
    • Statistical methods for testing functional divergence after gene duplication
    • Gu X (1999) Statistical methods for testing functional divergence after gene duplication. Mol Biol Evol 16:1664-1674
    • (1999) Mol Biol Evol , vol.16 , pp. 1664-1674
    • Gu, X.1
  • 8
    • 0035061686 scopus 로고    scopus 로고
    • Maximum likelihood approach for gene family evolution under functional divergence
    • Gu X (2001) Maximum likelihood approach for gene family evolution under functional divergence. Mol Biol Evol 18:453-464
    • (2001) Mol Biol Evol , vol.18 , pp. 453-464
    • Gu, X.1
  • 9
    • 0036205440 scopus 로고    scopus 로고
    • DIVERGE: Phylogeny-based Analysis for Functional-Structural Divergence of a Protein Family
    • Gu X, Vander Velden K (2002) DIVERGE: Phylogeny-based Analysis for Functional-Structural Divergence of a Protein Family. Bioinformatics 18:500-501
    • (2002) Bioinformatics , vol.18 , pp. 500-501
    • Gu, X.1    Vander Velden, K.2
  • 10
    • 2942568023 scopus 로고    scopus 로고
    • Statistical framework for phylogenetic analysis of expression profiles
    • Gu X (2004) Statistical framework for phylogenetic analysis of expression profiles. Genetics 167:531-542
    • (2004) Genetics , vol.167 , pp. 531-542
    • Gu, X.1
  • 11
    • 14144255920 scopus 로고    scopus 로고
    • Rapid Evolution of Expression and Regulatory Divergences after Yeast Gene Duplications
    • Gu X, Zhang Z, Huang W (2005) Rapid Evolution of Expression and Regulatory Divergences after Yeast Gene Duplications. PNAS 102:707-712
    • (2005) PNAS , vol.102 , pp. 707-712
    • Gu, X.1    Zhang, Z.2    Huang, W.3
  • 12
    • 0035165287 scopus 로고    scopus 로고
    • Cutting edge: Functional interactions between toll-like receptor (TLR) 2 and TLR1 or TLR6 in response to phenol-soluble modulin
    • Hajjar AM, O'Mahony DS, Ozinsky A, Underhill DM, Aderem A, Klebanoff SJ, Wilson CB (2001) Cutting edge: functional interactions between toll-like receptor (TLR) 2 and TLR1 or TLR6 in response to phenol-soluble modulin. J Immunol 166:15-19
    • (2001) J Immunol , vol.166 , pp. 15-19
    • Hajjar, A.M.1    O'Mahony, D.S.2    Ozinsky, A.3    Underhill, D.M.4    Aderem, A.5    Klebanoff, S.J.6    Wilson, C.B.7
  • 13
    • 0030595339 scopus 로고    scopus 로고
    • The dorsoventral regulatory gene cassette spatzle/Toll/cactus controls the potent antifungal response in Drosophila adults
    • Lemaitre B, Nicolas E, Michaut L, Reichhart JM, Hoffmann JA (1996) The dorsoventral regulatory gene cassette spatzle/Toll/cactus controls the potent antifungal response in Drosophila adults. Cell 86:973-983
    • (1996) Cell , vol.86 , pp. 973-983
    • Lemaitre, B.1    Nicolas, E.2    Michaut, L.3    Reichhart, J.M.4    Hoffmann, J.A.5
  • 14
    • 0029889222 scopus 로고    scopus 로고
    • Identification of functional residues and secondary structure from protein multiple sequence alignment
    • Livingstone CD, Barton GJ (1996) Identification of functional residues and secondary structure from protein multiple sequence alignment. Methods Enzymol 266:497-512
    • (1996) Methods Enzymol , vol.266 , pp. 497-512
    • Livingstone, C.D.1    Barton, G.J.2
  • 15
    • 0034623798 scopus 로고    scopus 로고
    • Structure and function of Toll-like receptor proteins
    • Means TK, Golenbock DT, Fenton MJ (2000) Structure and function of Toll-like receptor proteins. Life Sci 68:241-258
    • (2000) Life Sci , vol.68 , pp. 241-258
    • Means, T.K.1    Golenbock, D.T.2    Fenton, M.J.3
  • 16
    • 0030831210 scopus 로고    scopus 로고
    • A human homologue of the Drosophila Toll protein signals activation of adaptive immunity
    • Medzhitov R, Preston-Hurlburt P, Janeway CA Jr (1997) A human homologue of the Drosophila Toll protein signals activation of adaptive immunity. Nature 388:394-397
    • (1997) Nature , vol.388 , pp. 394-397
    • Medzhitov, R.1    Preston-Hurlburt, P.2    Janeway Jr., C.A.3
  • 17
    • 0028716102 scopus 로고
    • Prediction of the coding sequences of unidentified human genes. II. the coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1 (supplement)
    • Nomura N, Nagase T, Miyajima N, Sazuka T, Tanaka A, Sato S, Seki N, Kawarabayasi Y, Ishikawa K, Tabata S (1994) Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1 (supplement). DNA Res 1:251-262
    • (1994) DNA Res , vol.1 , pp. 251-262
    • Nomura, N.1    Nagase, T.2    Miyajima, N.3    Sazuka, T.4    Tanaka, A.5    Sato, S.6    Seki, N.7    Kawarabayasi, Y.8    Ishikawa, K.9    Tabata, S.10
  • 18
    • 0033582946 scopus 로고    scopus 로고
    • Coevolving protein residues: Maximum likelihood identification and relationship to structure
    • Pollock DD, Taylor WR, Goldman N (1999) Coevolving protein residues: maximum likelihood identification and relationship to structure. J Mol Biol 287:187-198
    • (1999) J Mol Biol , vol.287 , pp. 187-198
    • Pollock, D.D.1    Taylor, W.R.2    Goldman, N.3
  • 19
    • 0023375195 scopus 로고
    • The neighor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 20
    • 0024525693 scopus 로고
    • Female sterile mutations on the second chromosome of Drosophila melanogaster. I. Maternal effect mutations
    • Schupbach T, Wieschaus E (1989) Female sterile mutations on the second chromosome of Drosophila melanogaster. I. Maternal effect mutations. Genetics 121:101-117
    • (1989) Genetics , vol.121 , pp. 101-117
    • Schupbach, T.1    Wieschaus, E.2
  • 21
    • 0033648133 scopus 로고    scopus 로고
    • Phylogenetic variation and polymorphism at the toll-like receptor 4 locus (TLR4)
    • Smirnova I, Poltorak A, Chan EK, McBride C, Beutler B (2000) Phylogenetic variation and polymorphism at the toll-like receptor 4 locus (TLR4). Genome Biol http://www.genomebiology.com/2000/1/1/research/002.1.
    • (2000) Genome Biol
    • Smirnova, I.1    Poltorak, A.2    Chan, E.K.3    McBride, C.4    Beutler, B.5
  • 22
    • 0035104961 scopus 로고    scopus 로고
    • Toll-like receptors; Their physiological role and signal transduction system
    • Takeuchi O, Akira S (2001) Toll-like receptors; their physiological role and signal transduction system. Int Immunopharmacol 1:625-635
    • (2001) Int Immunopharmacol , vol.1 , pp. 625-635
    • Takeuchi, O.1    Akira, S.2
  • 23
    • 0034641738 scopus 로고    scopus 로고
    • Toll-related receptors and the control of antimicrobial peptide expression in Drosophila
    • Tauszig S, Jouanguy E, Hoffmann JA, Imler JL (2000) Toll-related receptors and the control of antimicrobial peptide expression in Drosophila. Proc Natl Acad Sci USA 97:10520-10525
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 10520-10525
    • Tauszig, S.1    Jouanguy, E.2    Hoffmann, J.A.3    Imler, J.L.4
  • 24
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DJ (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-2882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-2882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.J.5
  • 25
    • 0037427976 scopus 로고    scopus 로고
    • TOLL-like receptors linking innate and adaptive immune response
    • Werling D, Jungi TW (2003) TOLL-like receptors linking innate and adaptive immune response. Vet Immunol Immunopathol 91:1-12
    • (2003) Vet Immunol Immunopathol , vol.91 , pp. 1-12
    • Werling, D.1    Jungi, T.W.2
  • 26
    • 0037080024 scopus 로고    scopus 로고
    • Tissue expression of human Toll-like receptors and differential regulation of Toll-like receptor mRNAs in leukocytes in response to microbes, their products, and cytokines
    • 2
    • Zarember KA, Godowski PJ (2002) Tissue expression of human Toll-like receptors and differential regulation of Toll-like receptor mRNAs in leukocytes in response to microbes, their products, and cytokines. J Immunol 168(2):554-61
    • (2002) J Immunol , vol.168 , pp. 554-61
    • Zarember, K.A.1    Godowski, P.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.