[29] Identification of functional residues and secondary structure from protein multiple sequence alignment

Methods in Enzymology

Volumn 266, Issue , 1996, Pages 497-512

  Livingstone, Craig D ^a   Barton, Geoffrey J ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; GENETIC CONSERVATION; PHYLOGENY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; AMINO ACIDS; ANNEXINS; CONSERVED SEQUENCE; DATABASES, FACTUAL; FLAVODOXIN; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN STRUCTURE, SECONDARY; PROTEINS; REPRODUCIBILITY OF RESULTS; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE;

EID: 0029889222     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0076-6879(96)66031-5     Document Type: Article

References (31)

1. D. F. Feng and R. F. Doolittle, J. Mol. Evol. 25, 351 (1987).
2. G. J. Barton and M. J. E. Sternberg, J. Mol. Biol. 198, 327 (1987).
3. G. J. Barton, this series, Vol. 183, p. 403.
4. G. J. Barton, in "Protein Structure Prediction: A Practical Approach" (M. J. E. Sternberg, ed.), in press. IRL Press at Oxford Univ. Press, Oxford, 1995. (A preprint is available at the URL http://geoff.biop.ox.ac.uk/)
5. C. D. Livingstone and G. J. Barton, Comput. Appl. Biosci. 9, 745 (1993).
6. E. A. Kabat, "Structural Concepts in Immunology and Immunochemistry," 2nd Ed. Holt, Rinehart, and Winston, New York, 1976.
7. C. Sander and R. Schneider, Proteins: Struct. Funct. Genet. 9, 56 (1991).
8. R. F. Smith and T. F. Smith, Proc. Natl. Acad. Sci. U.S.A. 87, 118 (1990).
9. S. Brouillet, J. L. Risler, and P. P. Slonimski, Biochimie 74, 571 (1992).
10. D. J. Parry-Smith and T. K. Attwood, Comput. Appl. Biosci. 7, 233 (1991).
11. J. Devereux, P. Haeberli, and O. Smithies, Nucleic Acids Res. 12, 387 (1984).
12. G. J. Barton, Protein Eng. 6, 37 (1993).
13. W. R. Taylor, J. Theor. Biol. 119, 205 (1986).
14. M. J. J. M. Zvelebil, G. J. Barton, W. R. Taylor, and M. J. E. Sternberg, J. Mol. Biol. 195, 957 (1987).
15. G. J. Barton, R. H. Newman, P. F. Freemont, and M. J. Crumpton, Eur. J. Biochem. 198, 749 (1991).
16. R. Huber, J. Romsich, and E.-P. Paques, EMBO J. 9, 3867 (1990).
17. R. R. Copley and G. J. Barton, J. Mol. Biol. 242, 321 (1994).
18. I. P. Crawford, T. Niermann, and K. Kirchner, Proteins: Struct. Funct. Genet. 2, 118 (1987).
19. R. B. Russell, J. Breed, and G. J. Barton, FEBS Lett. 304, 15 (1992).
20. S. A. Benner and D. Gerloff, Adv. Enzyme Regul. 31, 121 (1990).
21. C. D. Livingstone and G. J. Barton, Int. J. Pept. Protein Res. 44, 239 (1994).
22. J. M. Levin, S. P. A. Pascarella, P. Argos, and J. Garnier, Protein Eng. 6, 849 (1993).
23. A. A. Salamov and V. V. Solovyev, J. Mol. Biol. 247, 11 (1995).
24. B. Rost and C. Sander, J. Mol. Biol. 232, 584 (1993).
25. R. B. Russell and G. J. Barton, J. Mol. Biol. 234, 951 (1993).
26. V. Lim, J. Mol. Biol. 88, 873 (1974).
27. J. Garnier, D. J. Osguthorpe, and B. Robson, J. Mol. Biol. 120, 97 (1978).
28. P. Y. Chou and G. D. Fasman, Adv. Enzymol. 47, 45 (1978).
29. G. D. Rose, Nature (London) 272, 586 (1978).
30. A. C. M. Wilmot and J. M. Thornton, J. Mol. Biol. 203, 221 (1988).
31. C. D. Livingstone, Ph.D. Thesis, University of Oxford, Oxford (1995).