메뉴 건너뛰기




Volumn 400, Issue 1-2, 2007, Pages 131-139

Alternative splicing and nonsense-mediated mRNA decay regulate gene expression of serum response factor

Author keywords

Differential expression; Gene regulation; NMD; Novel isoform

Indexed keywords

ISOPROTEIN; MESSENGER RNA; SERUM RESPONSE FACTOR; SERUM RESPONSE FACTOR DELTA 3; UNCLASSIFIED DRUG;

EID: 34548140084     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.06.008     Document Type: Article
Times cited : (17)

References (45)
  • 1
    • 0032476590 scopus 로고    scopus 로고
    • Serum response factor is essential for mesoderm formation during mouse embryogenesis
    • Arsenian S., Weinhold B., Oelgeschlager M., Ruther U., and Nordheim A. Serum response factor is essential for mesoderm formation during mouse embryogenesis. Embo. J. 17 (1998) 6289-6299
    • (1998) Embo. J. , vol.17 , pp. 6289-6299
    • Arsenian, S.1    Weinhold, B.2    Oelgeschlager, M.3    Ruther, U.4    Nordheim, A.5
  • 2
    • 33746214816 scopus 로고    scopus 로고
    • Autoimmunity as a result of escape from RNA surveillance
    • Bachmann M.P., et al. Autoimmunity as a result of escape from RNA surveillance. J. Immunol. 177 (2006) 1698-1707
    • (2006) J. Immunol. , vol.177 , pp. 1698-1707
    • Bachmann, M.P.1
  • 3
    • 0033000331 scopus 로고    scopus 로고
    • Dominant negative murine serum response factor: alternative splicing within the activation domain inhibits transactivation of serum response factor binding targets
    • Belaguli N.S., Zhou W., Trinh T.H., Majesky M.W., and Schwartz R.J. Dominant negative murine serum response factor: alternative splicing within the activation domain inhibits transactivation of serum response factor binding targets. Mol. Cell. Biol. 19 (1999) 4582-4591
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 4582-4591
    • Belaguli, N.S.1    Zhou, W.2    Trinh, T.H.3    Majesky, M.W.4    Schwartz, R.J.5
  • 4
    • 0034724894 scopus 로고    scopus 로고
    • Cleavage of the serum response factor during death receptor-induced apoptosis results in an inhibition of the c-FOS promoter transcriptional activity
    • Bertolotto C., et al. Cleavage of the serum response factor during death receptor-induced apoptosis results in an inhibition of the c-FOS promoter transcriptional activity. J. Biol. Chem. 275 (2000) 12941-12947
    • (2000) J. Biol. Chem. , vol.275 , pp. 12941-12947
    • Bertolotto, C.1
  • 5
    • 0034721644 scopus 로고    scopus 로고
    • Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology
    • Black D.L. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology. Cell 103 (2000) 367-370
    • (2000) Cell , vol.103 , pp. 367-370
    • Black, D.L.1
  • 6
    • 0024478422 scopus 로고
    • The sarcomeric actin CArG-binding factor is indistinguishable from the c-fos serum response factor
    • Boxer L.M., Prywes R., Roeder R.G., and Kedes L. The sarcomeric actin CArG-binding factor is indistinguishable from the c-fos serum response factor. Mol. Cell. Biol. 9 (1989) 515-522
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 515-522
    • Boxer, L.M.1    Prywes, R.2    Roeder, R.G.3    Kedes, L.4
  • 7
    • 13944270339 scopus 로고    scopus 로고
    • Senescent cells, tumor suppression, and organismal aging: good citizens, bad neighbors
    • Campisi J. Senescent cells, tumor suppression, and organismal aging: good citizens, bad neighbors. Cell 120 (2005) 513-522
    • (2005) Cell , vol.120 , pp. 513-522
    • Campisi, J.1
  • 8
    • 0042164600 scopus 로고    scopus 로고
    • Inhibitory cardiac transcription factor, SRF-N, is generated by caspase 3 cleavage in human heart failure and attenuated by ventricular unloading
    • Chang J., et al. Inhibitory cardiac transcription factor, SRF-N, is generated by caspase 3 cleavage in human heart failure and attenuated by ventricular unloading. Circulation 108 (2003) 407-413
    • (2003) Circulation , vol.108 , pp. 407-413
    • Chang, J.1
  • 9
    • 34247197937 scopus 로고    scopus 로고
    • The nonsense-mediated decay RNA surveillance pathway
    • Chang Y.F., Imam J.S., and Wilkinson M.F. The nonsense-mediated decay RNA surveillance pathway. Annu. Rev. Biochem. 76 (2007) 51-74
    • (2007) Annu. Rev. Biochem. , vol.76 , pp. 51-74
    • Chang, Y.F.1    Imam, J.S.2    Wilkinson, M.F.3
  • 10
    • 0036088639 scopus 로고    scopus 로고
    • Increased expression of alternatively spliced dominant-negative isoform of SRF in human failing hearts
    • Davis F.J., et al. Increased expression of alternatively spliced dominant-negative isoform of SRF in human failing hearts. Am. J. Physiol. Heart Circ Physiol 282 (2002) H1521-H1533
    • (2002) Am. J. Physiol. Heart Circ Physiol , vol.282
    • Davis, F.J.1
  • 11
    • 0035823536 scopus 로고    scopus 로고
    • Serum response factor cleavage by caspases 3 and 7 linked to apoptosis in human BJAB cells
    • Drewett V., et al. Serum response factor cleavage by caspases 3 and 7 linked to apoptosis in human BJAB cells. J. Biol. Chem. 276 (2001) 33444-33451
    • (2001) J. Biol. Chem. , vol.276 , pp. 33444-33451
    • Drewett, V.1
  • 12
    • 27944442063 scopus 로고    scopus 로고
    • The position of premature termination codons in the hepatocyte nuclear factor-1 beta gene determines susceptibility to nonsense-mediated decay
    • Harries L.W., Bingham C., Bellanne-Chantelot C., Hattersley A.T., and Ellard S. The position of premature termination codons in the hepatocyte nuclear factor-1 beta gene determines susceptibility to nonsense-mediated decay. Hum. Genet. 118 (2005) 214-224
    • (2005) Hum. Genet. , vol.118 , pp. 214-224
    • Harries, L.W.1    Bingham, C.2    Bellanne-Chantelot, C.3    Hattersley, A.T.4    Ellard, S.5
  • 13
    • 0027183971 scopus 로고
    • Identification of transcriptional activation and inhibitory domains in serum response factor (SRF) by using GAL4-SRF constructs
    • Johansen F.E., and Prywes R. Identification of transcriptional activation and inhibitory domains in serum response factor (SRF) by using GAL4-SRF constructs. Mol. Cell. Biol. 13 (1993) 4640-4647
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 4640-4647
    • Johansen, F.E.1    Prywes, R.2
  • 14
    • 0035036534 scopus 로고    scopus 로고
    • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
    • Kan Z., Rouchka E.C., Gish W.R., and States D.J. Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Res. 11 (2001) 889-900
    • (2001) Genome Res. , vol.11 , pp. 889-900
    • Kan, Z.1    Rouchka, E.C.2    Gish, W.R.3    States, D.J.4
  • 15
    • 0034141807 scopus 로고    scopus 로고
    • Four isoforms of serum response factor that increase or inhibit smooth-muscle-specific promoter activity
    • Kemp P.R., and Metcalfe J.C. Four isoforms of serum response factor that increase or inhibit smooth-muscle-specific promoter activity. Biochem. J. 345 Pt 3 (2000) 445-451
    • (2000) Biochem. J. , vol.345 , Issue.PART 3 , pp. 445-451
    • Kemp, P.R.1    Metcalfe, J.C.2
  • 16
    • 85047694248 scopus 로고    scopus 로고
    • Cardiac hypertrophy and histone deacetylase-dependent transcriptional repression mediated by the atypical homeodomain protein Hop
    • Kook H., et al. Cardiac hypertrophy and histone deacetylase-dependent transcriptional repression mediated by the atypical homeodomain protein Hop. J. Clin. Invest. 112 (2003) 863-871
    • (2003) J. Clin. Invest. , vol.112 , pp. 863-871
    • Kook, H.1
  • 17
    • 19344366251 scopus 로고    scopus 로고
    • Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells
    • Lejeune F., and Maquat L.E. Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells. Curr. Opin. Cell. Biol. 17 (2005) 309-315
    • (2005) Curr. Opin. Cell. Biol. , vol.17 , pp. 309-315
    • Lejeune, F.1    Maquat, L.E.2
  • 18
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis B.P., Green R.E., and Brenner S.E. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 189-192
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 19
    • 0029330286 scopus 로고
    • When cells stop making sense: effects of nonsense codons on RNA metabolism in vertebrate cells
    • Maquat L.E. When cells stop making sense: effects of nonsense codons on RNA metabolism in vertebrate cells. RNA 1 (1995) 453-465
    • (1995) RNA , vol.1 , pp. 453-465
    • Maquat, L.E.1
  • 20
    • 0742323558 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics
    • Maquat L.E. Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nat. Rev. Mol. Cell Biol. 5 (2004) 89-99
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 89-99
    • Maquat, L.E.1
  • 21
    • 0037718047 scopus 로고    scopus 로고
    • Pre-mRNA splicing modulations in senescence
    • Meshorer E., and Soreq H. Pre-mRNA splicing modulations in senescence. Aging Cell 1 (2002) 10-16
    • (2002) Aging Cell , vol.1 , pp. 10-16
    • Meshorer, E.1    Soreq, H.2
  • 22
    • 0037870478 scopus 로고    scopus 로고
    • Serum response factor: toggling between disparate programs of gene expression
    • Miano J.M. Serum response factor: toggling between disparate programs of gene expression. J. Mol. Cell. Cardiol. 35 (2003) 577-593
    • (2003) J. Mol. Cell. Cardiol. , vol.35 , pp. 577-593
    • Miano, J.M.1
  • 23
    • 10344236515 scopus 로고    scopus 로고
    • Restricted inactivation of serum response factor to the cardiovascular system
    • Miano J.M., et al. Restricted inactivation of serum response factor to the cardiovascular system. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 17132-17137
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 17132-17137
    • Miano, J.M.1
  • 24
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • Modrek B., and Lee C. A genomic view of alternative splicing. Nat. Genet. 30 (2002) 13-19
    • (2002) Nat. Genet. , vol.30 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 25
    • 0038617729 scopus 로고    scopus 로고
    • Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
    • Modrek B., and Lee C.J. Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat. Genet. 34 (2003) 177-180
    • (2003) Nat. Genet. , vol.34 , pp. 177-180
    • Modrek, B.1    Lee, C.J.2
  • 26
    • 0032104190 scopus 로고    scopus 로고
    • A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance
    • Nagy E., and Maquat L.E. A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance. Trends Biochem. Sci. 23 (1998) 198-199
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 198-199
    • Nagy, E.1    Maquat, L.E.2
  • 27
    • 23644456010 scopus 로고    scopus 로고
    • SRF-dependent gene expression in isolated cardiomyocytes: regulation of genes involved in cardiac hypertrophy
    • Nelson T.J., Balza Jr. R., Xiao Q., and Misra R.P. SRF-dependent gene expression in isolated cardiomyocytes: regulation of genes involved in cardiac hypertrophy. J. Mol. Cell. Cardiol. 39 (2005) 479-489
    • (2005) J. Mol. Cell. Cardiol. , vol.39 , pp. 479-489
    • Nelson, T.J.1    Balza Jr., R.2    Xiao, Q.3    Misra, R.P.4
  • 28
    • 33947305594 scopus 로고    scopus 로고
    • Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
    • Ni J.Z., et al. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev. 21 (2007) 708-718
    • (2007) Genes Dev. , vol.21 , pp. 708-718
    • Ni, J.Z.1
  • 29
    • 0024206625 scopus 로고
    • Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element
    • Norman C., Runswick M., Pollock R., and Treisman R. Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element. Cell 55 (1988) 989-1003
    • (1988) Cell , vol.55 , pp. 989-1003
    • Norman, C.1    Runswick, M.2    Pollock, R.3    Treisman, R.4
  • 30
    • 2942538855 scopus 로고    scopus 로고
    • Targeted inactivation of serum response factor in the developing heart results in myocardial defects and embryonic lethality
    • Parlakian A., et al. Targeted inactivation of serum response factor in the developing heart results in myocardial defects and embryonic lethality. Mol. Cell. Biol. 24 (2004) 5281-5289
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 5281-5289
    • Parlakian, A.1
  • 31
    • 33750719563 scopus 로고    scopus 로고
    • Maintenance of proteins and aging: the role of oxidized protein repair
    • Petropoulos I., and Friguet B. Maintenance of proteins and aging: the role of oxidized protein repair. Free Radic. Res. 40 (2006) 1269-1276
    • (2006) Free Radic. Res. , vol.40 , pp. 1269-1276
    • Petropoulos, I.1    Friguet, B.2
  • 32
    • 33747588775 scopus 로고    scopus 로고
    • Mutations that increase the life span of C. elegans inhibit tumor growth
    • Pinkston J.M., Garigan D., Hansen M., and Kenyon C. Mutations that increase the life span of C. elegans inhibit tumor growth. Science 313 (2006) 971-975
    • (2006) Science , vol.313 , pp. 971-975
    • Pinkston, J.M.1    Garigan, D.2    Hansen, M.3    Kenyon, C.4
  • 33
    • 33646745137 scopus 로고    scopus 로고
    • Lamin A-dependent nuclear defects in human aging
    • Scaffidi P., and Misteli T. Lamin A-dependent nuclear defects in human aging. Science 312 (2006) 1059-1063
    • (2006) Science , vol.312 , pp. 1059-1063
    • Scaffidi, P.1    Misteli, T.2
  • 34
    • 0028934434 scopus 로고
    • The MADS-box family of transcription factors
    • Shore P., and Sharrocks A.D. The MADS-box family of transcription factors. Eur. J. Biochem. 229 (1995) 1-13
    • (1995) Eur. J. Biochem. , vol.229 , pp. 1-13
    • Shore, P.1    Sharrocks, A.D.2
  • 35
    • 0029895008 scopus 로고    scopus 로고
    • Expression of the serum response factor gene is regulated by serum response factor binding sites
    • Spencer J.A., and Misra R.P. Expression of the serum response factor gene is regulated by serum response factor binding sites. J. Biol. Chem. 271 (1996) 16535-16543
    • (1996) J. Biol. Chem. , vol.271 , pp. 16535-16543
    • Spencer, J.A.1    Misra, R.P.2
  • 36
    • 0024400402 scopus 로고
    • Muscle-specific (CArG) and serum-responsive (SRE) promoter elements are functionally interchangeable in Xenopus embryos and mouse fibroblasts
    • Taylor M., Treisman R., Garrett N., and Mohun T. Muscle-specific (CArG) and serum-responsive (SRE) promoter elements are functionally interchangeable in Xenopus embryos and mouse fibroblasts. Development 106 (1989) 67-78
    • (1989) Development , vol.106 , pp. 67-78
    • Taylor, M.1    Treisman, R.2    Garrett, N.3    Mohun, T.4
  • 37
    • 0037705467 scopus 로고    scopus 로고
    • Conservation of human alternative splice events in mouse
    • Thanaraj T.A., Clark F., and Muilu J. Conservation of human alternative splice events in mouse. Nucleic Acids Res. 31 (2003) 2544-2552
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2544-2552
    • Thanaraj, T.A.1    Clark, F.2    Muilu, J.3
  • 38
    • 14544271073 scopus 로고    scopus 로고
    • Genetics of longevity and aging
    • Vijg J., and Suh Y. Genetics of longevity and aging. Annu. Rev. Med. 56 (2005) 193-212
    • (2005) Annu. Rev. Med. , vol.56 , pp. 193-212
    • Vijg, J.1    Suh, Y.2
  • 39
    • 0035967868 scopus 로고    scopus 로고
    • Activation of cardiac gene expression by myocardin, a transcriptional cofactor for serum response factor
    • Wang D., et al. Activation of cardiac gene expression by myocardin, a transcriptional cofactor for serum response factor. Cell 105 (2001) 851-862
    • (2001) Cell , vol.105 , pp. 851-862
    • Wang, D.1
  • 40
    • 0038801417 scopus 로고    scopus 로고
    • Regulation of cardiac growth and development by SRF and its cofactors
    • Wang D., et al. Regulation of cardiac growth and development by SRF and its cofactors. Cold Spring Harb. Symp. Quant. Biol. 67 (2002) 97-105
    • (2002) Cold Spring Harb. Symp. Quant. Biol. , vol.67 , pp. 97-105
    • Wang, D.1
  • 41
    • 0033653955 scopus 로고    scopus 로고
    • Stretch-induced alternative splicing of serum response factor promotes bronchial myogenesis and is defective in lung hypoplasia
    • Yang Y., Beqaj S., Kemp P., Ariel I., and Schuger L. Stretch-induced alternative splicing of serum response factor promotes bronchial myogenesis and is defective in lung hypoplasia. J. Clin. Invest. 106 (2000) 1321-1330
    • (2000) J. Clin. Invest. , vol.106 , pp. 1321-1330
    • Yang, Y.1    Beqaj, S.2    Kemp, P.3    Ariel, I.4    Schuger, L.5
  • 42
    • 0028268725 scopus 로고
    • T cell receptor gamma cDNA in human fetal liver and thymus: variable regions of gamma chains are restricted to V gamma I or V9, due to the absence of splicing of the V10 and V11 leader intron
    • Zhang X.M., Tonnelle C., Lefranc M.P., and Huck S. T cell receptor gamma cDNA in human fetal liver and thymus: variable regions of gamma chains are restricted to V gamma I or V9, due to the absence of splicing of the V10 and V11 leader intron. Eur. J. Immunol. 24 (1994) 571-578
    • (1994) Eur. J. Immunol. , vol.24 , pp. 571-578
    • Zhang, X.M.1    Tonnelle, C.2    Lefranc, M.P.3    Huck, S.4
  • 43
    • 0035955723 scopus 로고    scopus 로고
    • Early postnatal cardiac changes and premature death in transgenic mice overexpressing a mutant form of serum response factor
    • Zhang X., et al. Early postnatal cardiac changes and premature death in transgenic mice overexpressing a mutant form of serum response factor. J. Biol. Chem. 276 (2001) 40033-40040
    • (2001) J. Biol. Chem. , vol.276 , pp. 40033-40040
    • Zhang, X.1
  • 45
    • 11244305857 scopus 로고    scopus 로고
    • Identification of a novel serum response factor cofactor in cardiac gene regulation
    • Zhang X., Azhar G., Zhong Y., and Wei J.Y. Identification of a novel serum response factor cofactor in cardiac gene regulation. J. Biol. Chem. 279 (2004) 55626-55632
    • (2004) J. Biol. Chem. , vol.279 , pp. 55626-55632
    • Zhang, X.1    Azhar, G.2    Zhong, Y.3    Wei, J.Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.