Alveolate and chlorophycean mitochondrial cox2 genes split twice independently

Gene

Volumn 383, Issue , 2006, Pages 33-37

  Waller, Ross F ^a   Keeling, Patrick J ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Apicomplexa; Apicoplast; Dinoflagellate; Rare genomic changes

Indexed keywords

APICOPLAST; ARTICLE; COX2 GENE; DINOFLAGELLATE; EXPRESSED SEQUENCE TAG; GENE; GENE REARRANGEMENT; GENOME ANALYSIS; MITOCHONDRIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL;

ALGAE, GREEN; ANIMALS; APICOMPLEXA; CHLOROPHYTA; DINOFLAGELLIDA; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENE TRANSFER, HORIZONTAL; GENES, MITOCHONDRIAL; GENES, PROTOZOAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; SPECIES SPECIFICITY;

ALVEOLATA; APICOMPLEXA; CHLOROPHYCEAE; DINOPHYCEAE;

EID: 33750084191     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.07.003     Document Type: Article

References (22)

1. Archibald J.M., and Keeling P.J. Recycled plastids: a green movement in eukaryotic evolution. Trends Genet. 18 (2002) 577-584
2. Blanchard J.L., and Hicks J.S. The non-photosynthetic plastid in malarial parasites and other apicomplexans is derived from outside the green plastid lineage. J. Eukaryot. Microbiol. 46 (1999) 367-375
3. Bruno W.J., Socci N.D., and Halpern A.L. Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol. Biol. Evol. 17 (2000) 189-197
4. Claros M.G., and Vincens P. Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur. J. Biochem. 24 (1996) 79-86
5. Daley D.O., Clifton R., and Whelan J. Intracellular gene transfer: reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 10510-10515
6. Fast N.M., Kissinger J.C., Roos D.S., and Keeling P.J. Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol. Biol. Evol. 18 (2001) 418-426
7. Funes S., et al. A green algal apicoplast ancestor. Science 298 (2002) 2155
8. Funes S., Reyes-Prieto A., Perez-Martinez X., and Gonzalez-Halphen D. On the evolutionary origins of apicoplasts: revisiting the rhodophyte vs. chlorophyte controversy. Microbes Infect. 6 (2004) 305-311
9. Gardner M.J., et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419 (2002) 498-511
10. Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
11. Hackett J.D., Anderson D.M., Erdner D.L., and Bhattacharya D. Dinoflagellates: a remarkable evolutionary experiment. Am. J. Bot. 91 (2004) 1523-1534
12. Hackett J.D., et al. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Curr. Biol. 14 (2004) 213-218
13. Köhler S., et al. A plastid of probable green algal origin in apicomplexan parasites. Science 275 (1997) 1485-1489
14. Patron N.J., Rogers M.B., and Keeling P.J. Gene replacement of fructose-1,6-bisphosphate aldolase (FBA) supports a single photosynthetic ancestor of chromalveolates. Eukaryot. Cell 3 (2004) 1169-1175
15. Patron N.J., Waller R.F., and Keeling P.J. A tertiary plastid uses genes from two endosymbionts. J. Mol. Biol. 357 (2006) 1373-1382
16. Stechmann A., and Cavalier-Smith T. Rooting the eukaryote tree by using a derived gene fusion. Science 297 (2002) 89-91
17. Strimmer K., and von Haeseler A. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13 (1996) 964-969
18. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
19. Waller R.F., and McFadden G.I. The apicoplast: a review of the derived plastid of apicomplexan parasites. Curr. Issues Mol. Biol. 7 (2005) 57-79
20. Waller R.F., Keeling P.J., van Dooren G.G., and McFadden G.I. Comment on "A green algal apicoplast ancestor". Science 301 (2003) 49
21. Waller R.F., Patron N.J., and Keeling P.J. Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra. Int. J. Syst. Evol. Microbiol. 56 (2006) 1439-1447
22. Yoon H.S., Hackett J.D., van Dolah F.M., Nosenko T., Lidie K.L., and Bhattacharya D. Tertiary endosymbiosis driven genome evolution in dinoflagellate algae. Mol. Biol. Evol. 22 (2005) 1299-1308