Mitochondrial cytochrome b mRNA editing in dinoflagellates: Possible ecological and evolutionary associations?

Journal of Eukaryotic Microbiology

Volumn 52, Issue 6, 2005, Pages 538-545

  Zhang, Huan ^a   Lin, Senjie ^a  

^a UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

Cytochrome b; Dinoflagellate; Evolution; HAB; Mitochondria; RNA editing

Indexed keywords

COMPARATIVE STUDY; CYTOCHROME; DINOFLAGELLATE; ECOLOGICAL THEORY; EVOLUTIONARY THEORY; MITOCHONDRION; PHYLOGENETICS; RNA;

DINOPHYCEAE;

CYTOCHROME B; MESSENGER RNA; MITOCHONDRIAL MESSENGER RNA;

ANIMAL; ARTICLE; CLASSIFICATION; DINOFLAGELLATE; DNA SEQUENCE; ECOSYSTEM; ENZYMOLOGY; GENETICS; METABOLISM; MITOCHONDRION; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; RNA EDITING;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CYTOCHROMES B; DINOFLAGELLIDA; ECOSYSTEM; EVOLUTION, MOLECULAR; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA EDITING; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA;

EID: 33644832394     PISSN: 10665234     EISSN: 15507408     Source Type: Journal    
DOI: 10.1111/j.1550-7408.2005.00060.x     Document Type: Article

References (24)

1. Trp allows decoding of the UGA stop codon in Leishmania tarentolae. EMBO J., 18:7056-7062.
2. Benne, R., Van den Burg, J., Brakenboff, J. P. J., Sloof, P., Van Boom, J. H. & Tromp, M. C. 1986. Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell, 46:819-826.
3. Bock, R. 2001. RNA editing in plant mitochondria and chloroplasts. In: Bass, B. L. (ed.), RNA Editing. Frontiers in Molecular Biology. Oxford University Press, Oxford. p. 38-60.
4. Bowe, L. M. & dePamphilis, C. W. 1996. Effects of RNA editing and gene processing on phylogenetic reconstruction. Mol. Biol. Evol., 13:1159-1166.
5. Cavalier-Smith, T. 1998. A revised six-kingdom system of life. Biol. Rev., 73:203-266.
6. Driscoll, D. M. & Innerarity, T. L. 2001. RNA editing by cytidine deamination in mammals. In: Bass, B. L. (ed.), RNA Editing Frontiers in Molecular Biology. Oxford University Press, Oxford. p. 61-76.
7. Emeson, R. B. & Singh, M. 2001. Adenosine-to-inosine RNA editing: substrates and consequences. In: Bass, B. L. (ed.), RNA Editing. Frontiers in Molecular Biology. Oxford University Press, Oxford. p. 109-138.
8. Felsenstein, J. 2004. PHYLIP version 3.61. Department of Genetics, University of Washington, Seattle.
9. Gajadhar, A. A., Marquardt, W. C., Hall, R., Gunderson, J., Ariztia-Carmona, E. V. & Sogin, M. L. 1991. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates. Mol. Biochem. Parasitol., 45:147-154.
10. Gray, M. W. 2001. Speculations on the origin and evolution of editing. In: Bass, B. L. (ed.), RNA Editing. Frontiers in Molecular Biology. Oxford University Press, Oxford. p. 160-184.
11. Gray, M. W. 2003. Diversity and evolution of mitochondrial RNA editing systems. IUBMB Life, 55:227-233.
12. Grzebyk, D., Deardon, A., Berland, B. & Puochus, Y. F. 1997. Evidence of a new toxin in the red-tide dinoflagellate Prorocentrum minimum. J. Plankton Res., 19:1111-1124.
13. Guillard, R. R. & Ryther, J. H. 1962. Studies of marine planktonic diatoms. I. Cyclotella rana Hustedt and Detonula confervacea (Cleve.) Gran. Can. J. Microbiol., 18:229-239.
14. Hallegraeff, G. M. 1993. A review of harmful algal blooms and their apparent global increase. Phycologia, 32:79-99.
15. Hoopengardner, B., Bhalla, T., Staber, C. & Reenan, R. 2003. Nervous system targets of RNA editing identified by comparative genomics. Science, 301:832-836.
16. Hough, R. F. & Bass, B. L. 2001. Adenosine deaminases that act on RNA. In: Bass, B. L. (ed.), RNA Editing. Frontiers in Molecular Biology. Oxford University Press, Oxford. p. 77-108.
17. Kawahara, Y., Ito, K., Sun, H., Aizawa, H., Kanazawa, I. & Kwak, S. 2004. RNA editing and death of motor neurons. Nature, 427:801.
18. Lin, S., Zhang, H., Spencer, D. F., Norman, J. E. & Gray, M. W. 2002. Widespread and extensive editing of mitochondrial mRNAs in dinoflagellates. J. Mol. Biol., 320:727-739.
19. Litaker, R. W., Tester, P. A., Colorni, A., Levy, M. G. & Noga, E. J. 1999. The phylogenetic relationship of Pfiesteria piscicida, Cryptoperidiniopsoid sp. Amyloodinium ocellatum and a Pfiesteria-like dinoflagellate to other dinoflagellates and apicomplexans. J. Phycol., 35:1379-1389.
20. Saldarriaga, J. F., McEwan, M. L., Fast, N. M., Taylor, F. J. R. & Keeling, P. J. 2003. Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int. J. Syst. Evol. Microbiol., 53:355-365.
21. Saunders, G. W., Hill, D. R. A., Sexton, J. P. & Andersen, R. A. 1997. Small-subunit ribosomal RNA sequences from selected dinoflagellates: testing classical evolutionary hypotheses with molecular systematic methods. Plant System. Evol., 11(Suppl.):237-259.
22. Sellner, K. G., Doucette, G. J. & Kirkpatrick, G. J. 2003. Harmful algal blooms: causes, impacts and detection. J. Ind. Microbiol. Biotechnol., 30:383-406.
23. Stuart, K. D., Panigrahi, A. K. & Salavati, R. 2001. In: Bass, B. L. (ed.), RNA Editing. Frontiers in Molecular Biology. Oxford University Press, Oxford. p. 1-19.
24. Zhang, H., Bhattacharya, D. & Lin, S. 2005. Phylogeny of dinoflagellates based on mitochondrial cytochrome b and nuclear small subunit rDNA sequence comparisons. J. Phycol., 41:411-420.