Analysis of catRABC operon for catechol degradation from phenol-degrading Rhodococcus erythropolis

Applied Microbiology and Biotechnology

Volumn 76, Issue 1, 2007, Pages 159-168

  Vesely M ^a   Knoppova M ^a   Nesvera J ^a   Patek M ^a  

^a INSTITUTE OF MICROBIOLOGY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BATCH CELL CULTURE; BINDING SITES; DEGRADATION; ENZYMES; PHENOLS;

CATECHOL; OPERON; TRANSCRIPTIONAL REGULATORS;

GENETIC ENGINEERING;

CATECHOL; CATECHOL 1,2 DIOXYGENASE; CYCLIC AMP BINDING PROTEIN; GLUCOSE; LACTONE DERIVATIVE; MUCONIC ACID; PHENOL; SUCCINIC ACID;

BACTERIUM; BIODEGRADATION; ENZYME ACTIVITY; GENE EXPRESSION; PHENOLIC COMPOUND; PROTEIN;

ANALYTIC METHOD; ARTICLE; BACTERIUM CULTURE; BINDING SITE; CATA GENE; CATB GENE; CATC GENE; CATR GENE; CONTROLLED STUDY; DEGRADATION KINETICS; GENE; GENE CLUSTER; GENE EXPRESSION; GFPUV GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PROMOTER REGION; REPORTER GENE; RHODOCOCCUS ERYTHROPOLIS;

BACTERIAL PROTEINS; BASE SEQUENCE; CARBON-CARBON DOUBLE BOND ISOMERASES; CATECHOL 1,2-DIOXYGENASE; CATECHOLS; CYCLIC AMP RECEPTOR PROTEIN; DNA, INTERGENIC; DNA-BINDING PROTEINS; GENES, BACTERIAL; INTRAMOLECULAR LYASES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; OPERON; PHENOL; PROMOTER REGIONS (GENETICS); REPRESSOR PROTEINS; RHODOCOCCUS; SEQUENCE ALIGNMENT; SUCCINIC ACID; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

RHODOCOCCUS ERYTHROPOLIS;

EID: 34547607001     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-0997-6     Document Type: Article

References (35)

1. An HR, Park HH, Kim ES (2001) Cloning and expression of thermophilic catechol 1,2-dioxygenase gene (catA) from Streptomyces setonii. FEMS Microbiol Lett 195:17-22
2. Brinkrolf K, Brune I, Tauch A (2006) Transcriptional regulation of catabolic pathways for aromatic compounds in Corynebacterium glutamicum. Genet Mol Res 5:773-789
3. Čejková A, Masák J, Jirků V, Veselý M, Pátek M, Nešvera J (2005) Potential of Rhodococcus erythropolis as a bioremediation organism. World J Microbiol Biotechnol 21:317-321
4. Collier DN, Hager PW, Phibbs PV Jr (1996) Catabolite repression control in the Pseudomonads. Res Microbiol 147:551-561
5. Dal S, Steiner I, Gerischer U (2002) Multiple operons connected with catabolism of aromatic compounds in Acinetobacter sp. strain ADP1 are under carbon catabolite repression. J Mol Microbiol Biotechnol 4:389-404
6. DiMarco AA, Ornston LN (1994) Regulation of p-hydroxybenzoate hydroxylase synthesis by PobR bound to an operator in Acinetobacter calcoaceticus. J Bacteriol 176:4277-4284
7. Eikmanns BJ, Thum-Schmitz N, Eggeling L, Ludtke KU, Sahm H (1994) Nucleotide sequence, expression and transcriptional analysis of the Corynebacterium glutamicum gltA gene encoding citrate synthase. Microbiology 140:1817-1828
8. Eulberg D, Schlömann M (1998) The putative regulator of catechol catabolism in Rhodococcus opacus 1CP-an IclR-type, not a LysR-type transcriptional regulator. Antonie Van Leeuwenhoek 74:71-82
9. Eulberg D, Lakner S, Golovleva LA, Schlömann M (1998) Characterization of a protocatechuate catabolic gene cluster from Rhodococcus opacus 1CP: evidence for a merged enzyme with 4-carboxymuconolactone- decarboxylating and 3-oxoadipate enol-lactone-hydrolyzing activity. J Bacteriol 180:1072-1081
10. Gaines G III, Smith L, Neidle EL (1996) Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus. J Bacteriol 178:6833-6841
11. Gerischer U, Segura A, Ornston LN (1998) PcaU, a transcriptional activator of genes for protocatechuate utilization in Acinetobacter. J Bacteriol 180:1512-1524
12. Guo Z, Houghton JE (1999) PcaR-mediated activation and repression of pca genes from Pseudomonas putida are propagated by its binding to both the -35 and the -10 promoter elements. Mol Microbiol 32:253-263
13. Hanahan D (1985) Techniques for transformation of E. coli. In: Glover DM (ed) DNA cloning. A practical approach, vol 1. IRL, Oxford, pp 109-135
14. Harwood CS, Parales RE (1996) The β-ketoadipate pathway and the biology of self-identity. Annu Rev Microbiol 50:553-590
15. Madan Babu M, Teichmann SA (2003) Functional determinants of transcription factors in Escherichia coli: protein families and binding sites. Trends Genet 19:75-79
16. Masak J, Cejkova A, Jirku V, Kotrba D, Hron P, Siglova M (2005) Colonization of surfaces by phenolic compounds utilizing microorganisms. Environ Int 31:197-200
17. Matsumura E, Sakai M, Hayashi K, Murakami S, Takenaka S, Aoki K (2006) Constitutive expression of catABC genes in the aniline-assimilating bacterium Rhodococcus species AN-22: production, purification, characterization and gene analysis of CatA, CatB and CatC. Biochem J 393:219-226
18. McFall SM, Chugani SA, Chakrabarty AM (1998) Transcriptional activation of the catechol and chlorocatechol operons: variations on a theme. Gene 223:257-267
19. Molina-Henares AJ, Krell T, Eugenia Guazzaroni M, Segura A, Ramos JL (2006) Members of the IclR family of bacterial transcriptional regulators function as activators and/or repressors. FEMS Microbiol Rev 30:157-186
20. Murakami S, Kohsaka C, Okuno T, Takenaka S, Aoki K (2004) Purification, characterization, and gene cloning of cis,cis-muconate cycloisomerase from benzamide-assimilating Arthrobacter sp. BA-5-17. FEMS Microbiol Lett 231:119-124
21. Nga DP, Altenbuchner J, Heiss GS (2004) NpdR, a repressor involved in 2,4,6-trinitrophenol degradation in Rhodococcus opacus HL PM-1. J Bacteriol 186:98-103
22. Ngai KL, Neidle EL, Ornston LN (1990) Catechol and chlorocatechol 1,2-dioxygenases. Methods Enzymol 188:122-126
23. Nojiri H, Maeda K, Sekiguchi H, Urata M, Shintani M, Yoshida T, Habe H, Omori T (2002) Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10. Biosci Biotechnol Biochem 66:897-901
24. Ogawa N, Miyashita K (1995) Recombination of a 3-chlorobenzoate catabolic plasmid from Alcaligenes eutrophus NH9 mediated by direct repeat elements. Appl Environ Microbiol 61:3788-3795
25. Pan B, Unnikrishnan I, LaPorte DC (1996) The binding site of the IclR repressor protein overlaps the promoter of aceBAK.J Bacteriol 178:3982-3984
26. Pátek M, Muth G, Wohlleben W (2003) Function of Corynebacterium glutamicum promoters in Escherichia coli, Streptomyces lividans, and Bacillus subtilis. J Biotechnol 104:325-334
27. Sambrook J, Russel DV (2001) Molecular cloning. A laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
28. Schäfer A, Tauch A, Jäger W, Kalinowski J, Thierbach G, Pühler A (1994) Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145:69-73
29. Simon R, Priefer U, Pühler A (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram negative bacteria. Bio/technology 1:784-791
30. Treadway SL, Yanagimachi KS, Lankenau E, Lessard PA, Stephanopoulos G, Sinskey AJ (1999) Isolation and characterization of indene bioconversion genes from Rhodococcus strain I24. Appl Microbiol Biotechnol 51:786-793
31. Tropel D, van der Meer JR (2004) Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol Mol Biol Rev 68:474-500
32. van der Geize R, Hessels GI, van Gerwen R, van der Meijden P, Dijkhuizen L (2001) Unmarked gene deletion mutagenesis of kstD, encoding 3-ketosteroid Delta1-dehydrogenase, in Rhodococcus erythropolis SQ1 using sacB as counter-selectable marker. FEMS Microbiol Lett 205:197-202
33. Veselý M, Pátek M, Nešvera J, Čejková A, Masák J, Jirků V (2003) Host-vector system for phenol-degrading Rhodococcus erythropolis based on Corynebacterium plasmids. Appl Microbiol Biotechnol 61:523-527
34. Worsey MJ, Franklin FC, Williams PA (1978) Regulation of the degradative pathway enzymes coded for by the TOL plasmid (pWWO) from Pseudomonas putida mt-2. J Bacteriol 134:757-764
35. Zheng D, Constantinidou C, Hobman JL, Minchin SD (2004) Identification of the CRP regulon using in vitro and in vivo transcriptional profiling. Nucleic Acids Res 32:5874-5893