Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus

Journal of Bacteriology

Volumn 178, Issue 23, 1996, Pages 6833-6841

  Gaines III, George L ^a   Smith, Lucian ^a   Neidle, Ellen L ^b  

^a Isogenetics Inc   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROCARBON;

ACINETOBACTER CALCOACETICUS; ARTICLE; BACTERIAL METABOLISM; BIODEGRADATION; CARBOHYDRATE METABOLISM; METABOLIC REGULATION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; REGULATORY MECHANISM;

ACINETOBACTER CALCOACETICUS; BACTERIA (MICROORGANISMS);

EID: 0029848193     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.23.6833-6841.1996     Document Type: Article

References (36)

1. Ampe, F., and N. D. Lindley. 1995. Acetate utilization is inhibited by benzoate in Alcaligenes eutrophus: evidence for transcriptional control of the expression of acoE coding for acetyl coenzyme A synthetase. J. Bacteriol. 177:5826-5833.
2. Avisen, M. J., H. P. Hetherington, and R. G. Shulman. 1986. Applications of NMR to studies of tissue metabolism. Annu. Rev. Biophys. Biophys. Chem. 15:377-402.
3. Bell, J. D., J. C. C. Brown, and P. J. Sadler. 1989. NMR studies of body fluids. NMR Biomed. 2:246-256.
4. Bethesda Research Laboratories. 1986. BRL pUC host: E. coli DH5α competent cells. Bethesda Res. Lab. Focus 8:9-10.
5. Campbell-Burk, S. L., and R. G. Shulman. 1987. High-resolution NMR studies of Saccharomyces cerevisiae. Annu. Rev. Microbiol. 41:595-616.
6. Canovas, J. L., and R. Y. Stanier. 1967. Regulation of the ß-ketoadipate pathway in Moraxella calcoaceticus. Eur. J. Biochem. 1:289-300.
7. Cerdan, S., and J. Seelig. 1990. NMR studies of metabolism. Annu. Rev. Biophys. Biophys. Chem. 19:43-67.
8. Cohen, S. M. 1989. Enzyme regulation of metabolic flux. Methods Enzymol. 177:417-434.
9. Cohen-Bazire, G., W. R. Sistrom, and R. Y. Stanier. 1957. Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J. Cell. Comp. Physiol. 49:25-68.
10. Collier, L. S., and E. L. Neidle. 1996. Characterization of BenM, a LysR-type transcriptional activator regulating benzoate degradation in Acinetobacter calcoaceticus, abstr. K-127. In Abstracts of the General Meeting of the American Society for Microbiology 1996. American Society for Microbiology, Washington. D.C.
11. Crespi, H. L. 1982. The isolation of deuterated bacteriohodopsin from fully deuterated Halobacterium halobium. Methods Enzymol. 88:3-5.
12. Dalvit, C., S. Y. Ko, and J. M. Bohlen. 1996. Single and multiple-selective excitation combined with pulse-field gradients. J. Magn. Reson. 110:124-131.
13. DiMarco, A. A., B. Averhoff, and L. N. Ornston. 1993. Identification of the transcriptional activator pobR and characterization of its role in the expression of pobA, the structural gene for p-hydroxybenzoate hydroxylase in Acinetobacter calcoaceticus. J. Bacteriol. 175:4499-4506.
14. Freibolin, H. 1991. Basic one- and two-dimensional NMR spectroscopy. VCH Publishers, Weinheim, Germany.
15. Gaines, G. L., III. Unpublished data.
16. Gralton, E. M. 1996. Physical and genetic map of Acinetobacter calcoaceticus strain BD413(ADP1). M.S. thesis. University of Georgia, Athens.
17. Harwood, C. S., and R. E. Parales. 1996. The ß-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
18. Juni, E. 1972. Interspecies transformation of Acinetobacter. genetic evidence for a ubiquitous genus. J. Bacteriol. 112:917-931.
19. Juni, E., and A. Janik. 1969. Transformation of Acinetobacter calco-aceticus (Bacterium anitratum). J. Bacteriol. 98:281-288.
20. Katz, J. J., and H. L. Crespi. 1966. Deuterated organisms: cultivation and uses. Science 151:1187-1194.
21. Neidle, E. L., C. Hartnett, and L. N. Ornston. 1989. Characterization of Acinetobacter calcoaceticus catM, a repressor gene homologous in sequence to transcriptional activator genes. J. Bacteriol. 171:5410-5421.
22. Neidle, E. L., M. Shapiro, and L. N. Ornston. 1987. Cloning and expression in Escherichia coli of Acinetobacter calcoaceticus genes for benzoate degradation. J. Bacteriol. 169:5496-5503.
23. Nichols, N. N., and C. S. Harwood. 1995. Repression of 4-hydroxybenzoate transport and degradation by benzoate: a new layer of regulatory control in the Pseudomonas putida ß-ketoadipate pathway. J. Bacteriol. 177:7033-7040.
24. Norwood,T. J. 1994. Magnetic field gradients in NMR: friend or foe? Chem. Soc. Rev. 23:59-66.
25. Ornston, L. N., J. Houghton, E. L. Neidle, and L. A. Gregg. 1990. Subtle selection and novel mutation during evolutionary divergence of the ß-ketoadipate pathway, p. 207-225. In S. Silver, A. M. Chakrabarty. B. Iglewski. and S. Kaplan (ed.), Pseudomonas: biotransformations, pathogenesis, and evolving biotechnology. American Society for Microbiology, Washington, D.C.
26. Ornston, L. N., and E. L. Neidle. 1991. Evolution of genes for the ß-ketoadipate pathway in Acinetobacter calcoaceticus. p. 201-237. In K. J. Towner. E. Bergogne-Berezin, and C. A. Fewson (ed.), The biology of Acinetobacter. Plenum Press, New York.
27. Ornston, L. N., and R. Y. Stanier. 1966. The conversion of catechol and protocalechuate to ß-ketoadipate by Pseudomonas putida. I. Biochemistry. J. Biol. Chem. 241:3776-3786.
28. 13C NMR detection of folate-mediated serine and glycine synthesis in vivo in Saccharomyces cerevisiac. Biochemistry 31:8713-8710.
29. Prentki, P., and H. M. Krisch. 1984. In vitro insertional mutagenesis with a selectable DNA fragment. Gene 29:303-313.
30. Romero-Arroyo, C. E., M. A. Schell, G. L. Gaines III, and E. L. Neidle. 1945. catM encodes a LysR-type transcriptional activator regulating catechol deg- nidation in Acinetobater calcoacecticus. J. Bacteriol. 177:5891-5898.
31. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press. Cold Spring Harbor. N.Y.
32. Seeholzer, S. H., M. Cohn, J. A. Putkey, A. R. Means, and H. L. Crespi. 1986. NMR studies of a complex of deuterated calmodulin with melittin. Proc. Natl. Acad. Sci. USA 83:3634-3638.
33. Shanley, M. S., E. L. Neidle, R. E. Parales, and L. N. Ornston. 1986. Cloning and expression of Acinetobacter calcoaceticus catBCDE genes in Pseudomonas putida and Escherichia coli. J. Bacteriol. 165:557-563.
34. 1H NMR spin-echo spectroscopy of human erythrocytes. Transformation of exogenous compounds. NMR Biomed. 3:248-258.
35. Vieira, J., and J. Messing. 1982. The pUC plasmids. an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19:259-268.
36. Yanisch-Perron, C, J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleolide sequences of the M13mpl8 and pUC19 vectors. Gene .33:103-119.