-
1
-
-
25444467580
-
13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast
-
13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast. Genome Biol. 6:R49.
-
(2005)
Genome Biol
, vol.6
-
-
Blank, L.M.1
Kuepfer, L.2
Sauer, U.3
-
2
-
-
0037046271
-
Carbon catabolite repression in bacteria: Choice of the carbon source and autoregulatory limitation of sugar utilization
-
Bruckner, R., and F. Titgemeyer. 2002. Carbon catabolite repression in bacteria: choice of the carbon source and autoregulatory limitation of sugar utilization. FEMS Microbiol. Lett. 209:141-148.
-
(2002)
FEMS Microbiol. Lett
, vol.209
, pp. 141-148
-
-
Bruckner, R.1
Titgemeyer, F.2
-
3
-
-
0347623374
-
Adaptation limits diversification of experimental bacterial populations
-
Buckling, A., M. A. Wills, and N. Colegrave. 2003. Adaptation limits diversification of experimental bacterial populations. Science 302:2107-2109.
-
(2003)
Science
, vol.302
, pp. 2107-2109
-
-
Buckling, A.1
Wills, M.A.2
Colegrave, N.3
-
5
-
-
0015935501
-
Kinetic competition in vitro between phosphoenolpyruvate synthetase and the pyruvate dehydrogenase complex from Escherichia coli
-
Chulavatnatol, M., and D. E. Atkinson. 1973. Kinetic competition in vitro between phosphoenolpyruvate synthetase and the pyruvate dehydrogenase complex from Escherichia coli. J. Biol. Chem. 248:2716-2721.
-
(1973)
J. Biol. Chem
, vol.248
, pp. 2716-2721
-
-
Chulavatnatol, M.1
Atkinson, D.E.2
-
6
-
-
0015935472
-
Phosphoenolpyruvate synthetase from Escherichia coli. Effects of adenylate energy charge and modifier concentrations
-
Chulavatnatol, M., and D. E. Atkinson. 1973. Phosphoenolpyruvate synthetase from Escherichia coli. Effects of adenylate energy charge and modifier concentrations. J. Biol. Chem. 248:2712-2715.
-
(1973)
J. Biol. Chem
, vol.248
, pp. 2712-2715
-
-
Chulavatnatol, M.1
Atkinson, D.E.2
-
7
-
-
0037417962
-
Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli
-
Cooper, T. F., D. E. Rozen, and R. E. Lenski. 2003. Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli. Proc. Natl. Acad. Sci. USA 100:1072-1077.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 1072-1077
-
-
Cooper, T.F.1
Rozen, D.E.2
Lenski, R.E.3
-
8
-
-
0034051543
-
Evolution of drug resistance in experimental populations of Candida albicans
-
Cowen, L. E., D. Sanglard, D. Calabrese, C. Sirjusingh, J. B. Anderson, and L. M. Kohn. 2000. Evolution of drug resistance in experimental populations of Candida albicans. J. Bacteriol. 182:1515-1522.
-
(2000)
J. Bacteriol
, vol.182
, pp. 1515-1522
-
-
Cowen, L.E.1
Sanglard, D.2
Calabrese, D.3
Sirjusingh, C.4
Anderson, J.B.5
Kohn, L.M.6
-
10
-
-
0038441327
-
Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
-
Elena, S. F., and R. E. Lenski. 2003. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4:457-469.
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
11
-
-
0033578424
-
Systematic changes in gene expression patterns following adaptive evolution in yeast
-
Ferea, T. L., D. Botstein, P. O. Brown, and R. F. Rosenzweig. 1999. Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc. Natl. Acad. Sci. USA 96:9721-9726.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9721-9726
-
-
Ferea, T.L.1
Botstein, D.2
Brown, P.O.3
Rosenzweig, R.F.4
-
12
-
-
0037335931
-
Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS
-
Fischer, E., and U. Sauer. 2003. Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur. J. Biochem. 270: 880-891.
-
(2003)
Eur. J. Biochem
, vol.270
, pp. 880-891
-
-
Fischer, E.1
Sauer, U.2
-
14
-
-
25844495901
-
Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
-
Fong, S. S., A. R. Joyce, and B. O. Palsson. 2005. Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Res. 15:1365-1372.
-
(2005)
Genome Res
, vol.15
, pp. 1365-1372
-
-
Fong, S.S.1
Joyce, A.R.2
Palsson, B.O.3
-
15
-
-
0142152457
-
Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model
-
Fong, S. S., J. Y. Marciniak, and B. O. Palsson. 2003. Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model. J. Bacteriol. 185:6400-6408.
-
(2003)
J. Bacteriol
, vol.185
, pp. 6400-6408
-
-
Fong, S.S.1
Marciniak, J.Y.2
Palsson, B.O.3
-
16
-
-
33646362289
-
Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes
-
Fong, S. S., A. Nanchen, B. O. Palsson, and U. Sauer. 2006. Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes. J. Biol. Chem. 281:8024-8033.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 8024-8033
-
-
Fong, S.S.1
Nanchen, A.2
Palsson, B.O.3
Sauer, U.4
-
17
-
-
6944224154
-
Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes
-
Fong, S. S., and B. O. Palsson. 2004. Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. Nat. Genet. 36:1056-1058.
-
(2004)
Nat. Genet
, vol.36
, pp. 1056-1058
-
-
Fong, S.S.1
Palsson, B.O.2
-
18
-
-
33751544539
-
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
-
Herring, C. D., A. Raghunathan, C. Honisch, T. Patel, M. K. Applebee, A. R. Joyce, T. J. Albert, F. R. Blattner, D. van den Boom, C. R. Cantor, and B. O. Palsson. 2006. Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. Nat. Genet. 38:1406-1412.
-
(2006)
Nat. Genet
, vol.38
, pp. 1406-1412
-
-
Herring, C.D.1
Raghunathan, A.2
Honisch, C.3
Patel, T.4
Applebee, M.K.5
Joyce, A.R.6
Albert, T.J.7
Blattner, F.R.8
van den Boom, D.9
Cantor, C.R.10
Palsson, B.O.11
-
19
-
-
10944220879
-
High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12
-
Honisch, C., A. Raghunathan, C. R. Cantor, B. O. Palsson, and D. van den Boom. 2004. High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12. Genome Res. 14:2495-2502.
-
(2004)
Genome Res
, vol.14
, pp. 2495-2502
-
-
Honisch, C.1
Raghunathan, A.2
Cantor, C.R.3
Palsson, B.O.4
van den Boom, D.5
-
20
-
-
33845269743
-
Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains
-
Hua, Q., A. R. Joyce, S. S. Fong, and B. O. Palsson. 2006. Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. Biotechnol. Bioeng. 95:992-1002.
-
(2006)
Biotechnol. Bioeng
, vol.95
, pp. 992-1002
-
-
Hua, Q.1
Joyce, A.R.2
Fong, S.S.3
Palsson, B.O.4
-
21
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R. A., B. Hobbs, F. Collin, Y. D. Beazer-Barclay, K. J. Antonellis, U. Scherf, and T. P. Speed. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
22
-
-
18144396807
-
Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli
-
Liu, M., T. Durfee, J. E. Cabrera, K. Zhao, D. J. Jin, and F. R. Blattner. 2005. Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli. J. Biol. Chem. 280:15921-15927.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 15921-15927
-
-
Liu, M.1
Durfee, T.2
Cabrera, J.E.3
Zhao, K.4
Jin, D.J.5
Blattner, F.R.6
-
23
-
-
0033068938
-
Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations
-
Notley-McRobb, L., and T. Ferenci. 1999. Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations. Environ. Microbiol. 1:33-43.
-
(1999)
Environ. Microbiol
, vol.1
, pp. 33-43
-
-
Notley-McRobb, L.1
Ferenci, T.2
-
24
-
-
0041625721
-
Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature
-
Richie, M. M., A. F. Bennett, R. E. Lenski, and A. D. Long. 2003. Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. Physiol. Genomics 14:47-58.
-
(2003)
Physiol. Genomics
, vol.14
, pp. 47-58
-
-
Richie, M.M.1
Bennett, A.F.2
Lenski, R.E.3
Long, A.D.4
-
25
-
-
17644375240
-
The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria
-
Sauer, U., and B. J. Kikmanns. 2005. The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria. FEMS Microbiol. Rev. 29:765-794.
-
(2005)
FEMS Microbiol. Rev
, vol.29
, pp. 765-794
-
-
Sauer, U.1
Kikmanns, B.J.2
-
26
-
-
0032753923
-
Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
-
Sauer, U., D. R. Lasko, J. Fiaux, M. Hochuli, R. Glaser, T. Szyperski, K. Wuthrich, and J. E. Bailey. 1999. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 181:6679-6688.
-
(1999)
J. Bacteriol
, vol.181
, pp. 6679-6688
-
-
Sauer, U.1
Lasko, D.R.2
Fiaux, J.3
Hochuli, M.4
Glaser, R.5
Szyperski, T.6
Wuthrich, K.7
Bailey, J.E.8
-
27
-
-
0036811766
-
Fitness evolution and the rise of mutator alleles in experimental Escherichia coli populations
-
Shaver, A. C., P. G. Dombrowski, J. Y. Sweeney, T. Treis, R. M. Zappala, and P. D. Sniegowski. 2002. Fitness evolution and the rise of mutator alleles in experimental Escherichia coli populations. Genetics 162:557-566.
-
(2002)
Genetics
, vol.162
, pp. 557-566
-
-
Shaver, A.C.1
Dombrowski, P.G.2
Sweeney, J.Y.3
Treis, T.4
Zappala, R.M.5
Sniegowski, P.D.6
-
28
-
-
0029795621
-
Catabolite repression: A story without end
-
Ullmann, A. 1996. Catabolite repression: a story without end. Res. Microbiol. 147:455-458.
-
(1996)
Res. Microbiol
, vol.147
, pp. 455-458
-
-
Ullmann, A.1
-
29
-
-
15044347498
-
Metabolic-flux analysis of Saccharomyces cerevisiae CEN.PK113-7D based on mass isotopomer measurements of (13)C-labeled primary metabolites
-
van Winden, W. A., J. C. van Dam, C. Ras, R. J. Kleijn, J. L. Vinke, W. M. van Gulik, and J. J. Heijnen. 2005. Metabolic-flux analysis of Saccharomyces cerevisiae CEN.PK113-7D based on mass isotopomer measurements of (13)C-labeled primary metabolites. FEMS Yeast Res. 5:559-568.
-
(2005)
FEMS Yeast Res
, vol.5
, pp. 559-568
-
-
van Winden, W.A.1
van Dam, J.C.2
Ras, C.3
Kleijn, R.J.4
Vinke, J.L.5
van Gulik, W.M.6
Heijnen, J.J.7
-
30
-
-
0037145633
-
Correcting mass isotopomer distributions for naturally occurring isotopes
-
van Winden, W. A., C. Wittmann, E. Heinzle, and J. J. Heijnen. 2002. Correcting mass isotopomer distributions for naturally occurring isotopes. Biotechnol. Bioeng. 80:477-479.
-
(2002)
Biotechnol. Bioeng
, vol.80
, pp. 477-479
-
-
van Winden, W.A.1
Wittmann, C.2
Heinzle, E.3
Heijnen, J.J.4
-
31
-
-
0036736638
-
The apparent clock-like evolution of Escherichia coli in glucose-limited chemostats is reproducible at large but not at small population sizes and can be explained with Monod kinetics
-
Wick, L. M., H. Weilenmann, and T. Egli. 2002. The apparent clock-like evolution of Escherichia coli in glucose-limited chemostats is reproducible at large but not at small population sizes and can be explained with Monod kinetics. Microbiology 148:2889-2902.
-
(2002)
Microbiology
, vol.148
, pp. 2889-2902
-
-
Wick, L.M.1
Weilenmann, H.2
Egli, T.3
-
32
-
-
0141504947
-
Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout
-
Yang, C., Q. Hua, T. Baba, H. Mori, and K. Shimizu. 2003. Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout. Biotechnol. Bioeng. 84:129-144.
-
(2003)
Biotechnol. Bioeng
, vol.84
, pp. 129-144
-
-
Yang, C.1
Hua, Q.2
Baba, T.3
Mori, H.4
Shimizu, K.5
-
33
-
-
12544255327
-
Transient expression and flux changes during a shift from high to low riboflavin production in continuous cultures of Bacillus subtilis
-
Zamboni, N., E. Fischer, A. Muffler, M. Wyss, H. P. Hohmann, and U. Sauer. 2005. Transient expression and flux changes during a shift from high to low riboflavin production in continuous cultures of Bacillus subtilis. Biotechnol. Bioeng. 89:219-232.
-
(2005)
Biotechnol. Bioeng
, vol.89
, pp. 219-232
-
-
Zamboni, N.1
Fischer, E.2
Muffler, A.3
Wyss, M.4
Hohmann, H.P.5
Sauer, U.6
|