Detecting oxidative post-translational modifications in proteins

Amino Acids

Volumn 33, Issue 1, 2007, Pages 51-56

  Gianazza, E ^a   Crawford, J ^b   Miller, I ^c  

^a UNIVERSITY OF MILAN   (Italy)

^b Nonlinear Dynamics   (United Kingdom)

^c UNIVERSITY OF VETERINARY MEDICINE   (Austria)

Author keywords

Carbonylation; Electrophoresis; Glutathionylation; Oxidative post translational modifications; Proteomics

Indexed keywords

ALDEHYDE; CYSTEINE; LYSINE; METHIONINE; PROTEIN; TYROSINE;

ARTICLE; CARBONYLATION; CATALYSIS; CELL CULTURE; ELECTRON SPIN RESONANCE; ELECTROPHORESIS; IMMUNOPRECIPITATION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; OXIDATION REDUCTION REACTION; OXIDATIVE STRESS; PEROXIDATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MODIFICATION; PROTEOMICS; REVERSED PHASE LIQUID CHROMATOGRAPHY;

OXIDATION-REDUCTION; OXIDATIVE STRESS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEINS;

EID: 34547127601     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-006-0410-2     Document Type: Article

References (61)

1. S Awasthi A Gyurasics SA Knight SE Welty CV Smith 1998 Protein oxidation biomarkers in hyperoxic lung injury in rats: effects of U-74389 Toxicol Lett 95 47 61
2. JW Baty MB Hampton CC Winterbourn 2002 Detection of oxidant sensitive thiol proteins by fluorescence labeling and two-dimensional electrophoresis Proteomics 2 1261 1266
3. J Bautista MD Mateos-Nevado 1998 Immunological detection and quantification of oxidized proteins by labelling with digoxigenin Biosci Biotechnol Biochem 62 419 423
4. BS Berlett ER Stadtman 1997 Protein oxidation in aging, disease, and oxidative stress J Biol Chem 272 20313 20316
5. RL Caruso BL Upham C Harris JE Trosko 2005 Biphasic lindane-induced oxidation of glutathione and inhibition of gap junctions in myometrial cells Toxicol Sci 86 417 426
6. F Casoni M Basso T Massignan E Gianazza C Cheroni M Salmona C Bendotti V Bonetto 2005 Protein nitration in a mouse model of familial amyotrophic lateral sclerosis: Possible multifunctional role in the pathogenesis J Biol Chem 280 16295 16304
7. YC Chai G Hoppe J Sears 2003 Reversal of protein S-glutathiolation by glutaredoxin in the retinal pigment epithelium Exp Eye Res 76 155 159
8. G Cheng Y Ikeda Y Iuchi J Fujii 2005 Detection of S-glutathionylated proteins by glutathione S-transferase overlay Arch Biochem Biophys 435 42 49
9. GA Czapski D Avram KW Wirtz EH Pap JB Strosznajder 2001 Detection of protein oxidation in endothelial cells by fluorescently labelled tyramine Med Sci Monit 7 606 609
10. KJ Davies 2001 Degradation of oxidized proteins by the 20S proteasome Biochimie 83 301 310
11. RT Dean S Fu R Stocker MJ Davies 1997 Biochemistry and pathology of radical-mediated protein oxidation Biochem J 324 1 18
12. M Demasi GM Silva LE Netto 2003 20S proteasome from Saccharomyces cerevisiae is responsive to redox modifications and is S-glutathionylated J Biol Chem 278 679 685
13. RA Dunlop KJ Rodgers RT Dean 2002 Recent developments in the intracellular degradation of oxidized proteins Free Radic Biol Med 33 894 906
14. P Eaton N Wright DJ Hearse MJ Shattock 2002 Glyceraldehyde phosphate dehydrogenase oxidation during cardiac ischemia and reperfusion J Mol Cell Cardiol 34 1549 1560
15. K England T Cotter 2004 Identification of carbonylated proteins by MALDI-TOF mass spectroscopy reveals susceptibility of ER Biochem Biophys Res Commun 320 123 130
16. AE Fisher DP Naughton 2005 Why nutraceuticals do not prevent or treat Alzheimer's disease Nutr J 4 14
17. B Frank S Gupta 2005 A review of antioxidants and Alzheimer's disease Ann Clin Psychiatry 17 269 286
18. M Fratelli H Demol M Puype S Casagrande I Eberini M Salmona V Bonetto M Mengozzi F Duffieux E Miclet A Bachi J Vandekerckhove E Gianazza P Ghezzi 2002 Identification by redox proteomics of glutathionylated proteins in oxidatively stressed human T lymphocytes Proc Natl Acad Sci USA 99 3505 3510
19. M Fratelli H Demol M Puype S Casagrande P Villa I Eberini J Vandekerckhove E Gianazza P Ghezzi 2003 Identification of proteins undergoing glutathionylation in oxidatively stressed hepatocytes and hepatoma cells Proteomics 3 1154 1161
20. P Ghezzi V Bonetto M Fratelli 2005 Thiol-disulfide balance: from the concept of oxidative stress to that of redox regulation Antioxid Redox Signal 7 964 972
21. HR Griffiths 2000 Antioxidants and protein oxidation Free Radic Res 33 [Suppl] S47 S58
22. T Grune K Merker G Sandig KJ Davies 2003 Selective degradation of oxidatively modified protein substrates by the proteasome Biochem Biophys Res Commun 305 709 718
23. Y Hamnell-Pamment C Lind C Palmberg T Bergman IA Cotgreave 2005 Determination of site-specificity of S-glutathionylated cellular proteins Biochem Biophys Res Commun 332 362 369
24. KM Humphries C Juliano SS Taylor 2002 Regulation of cAMP-dependent protein kinase activity by glutathionylation J Biol Chem 277 43505 43511
25. K Iwai 2003 An ubiquitin ligase recognizing a protein oxidized by iron: implications for the turnover of oxidatively damaged proteins J Biochem (Tokyo) 134 175 182
26. MJ Jackson 1999 An overview of methods for assessment of free radical activity in biology Proc Nutr Soc 58 1001 1006
27. AF Jones J Lunec 1987 Protein fluorescence and its relationship to free radical activity Br J Cancer [Suppl] 8 60 65
28. I Juranek S Bezek 2005 Controversy of free radical hypothesis: reactive oxygen species: cause or consequence of tissue injury? Gen Physiol Biophys 24 263 278
29. MA Korolainen G Goldsteins I Alafuzoff J Koistinaho T Pirttila 2002 Proteomic analysis of protein oxidation in Alzheimer's disease brain Electrophoresis 23 3428 3433
30. BK Kristensen P Askerlund NV Bykova H Egsgaard IM Moller 2004 Identification of oxidised proteins in the matrix of rice leaf mitochondria by immunoprecipitation and two-dimensional liquid chromatography-tandem mass spectrometry Phytochemistry 65 1839 1851
31. T Laragione V Bonetto F Casoni T Massignan G Bianchi E Gianazza P Ghezzi 2003 Redox regulation of surface protein thiols: identification of integrin α-4 as a molecular target by using redox proteomics Proc Natl Acad Sci USA 100 14737 14741
32. C Lind R Gerdes Y Hamnell I Schuppe-Koistinen HB von Lowenhielm A Holmgren IA Cotgreave 2002 Identification of S-glutathionylated cellular proteins during oxidative stress and constitutive metabolism by affinity purification and proteomic analysis Arch Biochem Biophys 406 229 240
33. S Linton MJ Davies RT Dean 2001 Protein oxidation and ageing Exp Gerontol 36 1503 1518
34. J Mary S Vougier CR Picot M Perichon I Petropoulos B Friguet 2004 Enzymatic reactions involved in the repair of oxidized proteins Exp Gerontol 39 1117 1123
35. ST Mayne 2003 Antioxidant nutrients and chronic disease: use of biomarkers of exposure and oxidative stress status in epidemiologic research J Nutr [Suppl] 133 3 933S 940S
36. H Mirzaei F Regnier 2005 Affinity chromatographic selection of carbonylated proteins followed by identification of oxidation sites using tandem mass spectrometry Anal Chem 77 2386 2392
37. M Miyagi H Sakaguchi RM Darrow L Yan KA West KS Aulak DJ Stuehr JG Hollyfield DT Organisciak JW Crabb 2002 Evidence that light modulates protein nitration in rat retina Mol Cell Proteomics 1 293 303
38. IM Moller BK Kristensen 2006 Protein oxidation in plant mitochondria detected as oxidized tryptophan Free Radic Biol Med 40 430 435
39. R Moreau SH Heath CE Doneanu JG Lindsay TM Hagen 2003 Age-related increase in 4-hydroxynonenal adduction to rat heart α-ketoglutarate dehydrogenase does not cause loss of its catalytic activity Antioxid Redox Signal 5 517 527
40. PI Moreira MA Smith X Zhu A Nunomura RJ Castellani G Perry 2005 Oxidative stress and neurodegeneration Ann N Y Acad Sci 1043 545 552
41. J Moskovitz ER Stadtman 2003 Selenium-deficient diet enhances protein oxidation and affects methionine sulfoxide reductase (MsrB) protein level in certain mouse tissues Proc Natl Acad Sci USA 100 7486 7490
42. SK Niture CS Velu NI Bailey KS Srivenugopal 2005 S-thiolation mimicry: quantitative and kinetic analysis of redox status of protein cysteines by glutathione-affinity chromatography Arch Biochem Biophys 444 174 184
43. Packer L (ed) (1984) Oxygen radicals in biological systems. Methods Enzymol 105: 3-600
44. Packer L, Glazer AN (eds) (1990) Oxygen radicals in biological systems. Part B: Oxygen radicals and antioxidants. Methods Enzymol 186: 1-855
45. T Rabilloud M Heller F Gasnier S Luche C Rey R Aebersold M Benahmed P Louisot J Lunardi 2002 Proteomics analysis of cellular response to oxidative stress: evidence for in vivo overoxidation of peroxiredoxins at their active site J Biol Chem 277 19396 19401
46. T Reinheckel S Korn S Mohring W Augustin W Halangk L Schild 2000 Adaptation of protein carbonyl detection to the requirements of proteome analysis demonstrated for hypoxia/reoxygenation in isolated rat liver mitochondria Arch Biochem Biophys 376 59 65
47. K Rokutan JA Thomas RB Johnston Jr 1991 Phagocytosis and stimulation of the respiratory burst by phorbol diester initiate S-thiolation of specific proteins in macrophages J Immunol 147 260 264
48. P Rottoli B Magi R Cianti E Bargagli C Vagaggini N Nikiforakis V Pallini L Bini 2005 Carbonylated proteins in bronchoalveolar lavage of patients with sarcoidosis, pulmonary fibrosis associated with systemic sclerosis and idiopathic pulmonary fibrosis Proteomics 5 2612 2618
49. 2-induced oxidative stress result in different patterns of cellular protein oxidation Eur J Biochem 270 4859 4865
50. C Seppi MA Castellana G Minetti G Piccinini C Balduini A Brovelli 1991 Evidence for membrane protein oxidation during in vivo aging of human erythrocytes Mech Ageing Dev 57 247 258
51. BA Soreghan F Yang SN Thomas J Hsu AJ Yang 2003 High-throughput proteomic-based identification of oxidatively induced protein carbonylation in mouse brain Pharm Res 20 1713 1720
52. DM Sullivan NB Wehr MM Fergusson RL Levine T Finkel 2000 Identification of oxidant-sensitive proteins: TNF-α induces protein glutathiolation Biochemistry 39 11121 11128
53. JM Talent Y Kong RW Gracy 1998 A double stain for total and oxidized proteins from two-dimensional fingerprints Anal Biochem 263 31 38
54. JA Thomas EM Park YC Chai R Brooks K Rokutan RB Johnston Jr 1991 S-thiolation of protein sulfhydryls Adv Exp Med Biol 283 95 103
55. ML Tiku R Shah GT Allison 2000 Evidence linking chondrocyte lipid peroxidation to cartilage matrix protein degradation: possible role in cartilage aging and the pathogenesis of osteoarthritis J Biol Chem 275 20069 20076
56. M Valko H Morris MT Cronin 2005 Metals, toxicity and oxidative stress Curr Med Chem 12 1161 1208
57. M Valko CJ Rhodes J Moncol M Izakovic M Mazur 2006 Free radicals, metals and antioxidants in oxidative stress-induced cancer Chem Biol Interact 160 1 40
58. E Wagner S Luche L Penna M Chevallet A Van Dorsselaer E Leize-Wagner T Rabilloud 2002 A method for detection of overoxidation of cysteines: peroxiredoxins are oxidized in vivo at the active-site cysteine during oxidative stress Biochem J 366 777 785
59. R Wait S Begum D Brambilla AM Carabelli F Conserva A Rocco Guerini I Eberini R Ballerio M Gemeiner I Miller E Gianazza 2005 Redox options in two-dimensional electrophoresis Amino Acids 28 239 272
60. HA Woo SW Kang HK Kim KS Yang HZ Chae SG Rhee 2003 Reversible oxidation of the active site cysteine of peroxiredoxins to cysteine sulfinic acid: immunoblot detection with antibodies specific for the hyperoxidized cysteine-containing sequence J Biol Chem 278 47361 47364
61. BS Yoo FE Regnier 2004 Proteomic analysis of carbonylated proteins in two-dimensional gel electrophoresis using avidin-fluorescein affinity staining Electrophoresis 25 1334 1341