-
1
-
-
0033548686
-
Fluorescence spectroscopy of single biomolecules
-
Weiss S. Fluorescence spectroscopy of single biomolecules. Science 283 (1999) 1676-1683
-
(1999)
Science
, vol.283
, pp. 1676-1683
-
-
Weiss, S.1
-
2
-
-
0033823060
-
The renaissance of fluorescence resonance energy transfer
-
Selvin P.R. The renaissance of fluorescence resonance energy transfer. Nat. Struct. Biol. 7 (2000) 730-734
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 730-734
-
-
Selvin, P.R.1
-
3
-
-
0027394243
-
Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer
-
Clegg R.M., Murchie A.I.H., Zechel A., and Lilley D.M.J. Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer. Proc. Nat. Acad. Sci. USA 90 (1993) 2994-2998
-
(1993)
Proc. Nat. Acad. Sci. USA
, vol.90
, pp. 2994-2998
-
-
Clegg, R.M.1
Murchie, A.I.H.2
Zechel, A.3
Lilley, D.M.J.4
-
4
-
-
0029987587
-
Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor
-
Ha T., Enderle T., Ogletree D.F., Chemla D.S., Selvin P.R., and Weiss S. Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor. Proc. Natl. Acad. Sci. USA 93 (1996) 6264-6268
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6264-6268
-
-
Ha, T.1
Enderle, T.2
Ogletree, D.F.3
Chemla, D.S.4
Selvin, P.R.5
Weiss, S.6
-
5
-
-
0033616580
-
Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of förster distance dependence and subpopulations
-
Deniz A.A., Dahan M., Grunwell J.R., Ha T., Faulhaber A.E., Chemla D.S., Weiss S., and Schultz P.G. Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of förster distance dependence and subpopulations. Proc. Natl. Acad. Sci. USA 96 (1999) 3670-3675
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3670-3675
-
-
Deniz, A.A.1
Dahan, M.2
Grunwell, J.R.3
Ha, T.4
Faulhaber, A.E.5
Chemla, D.S.6
Weiss, S.7
Schultz, P.G.8
-
6
-
-
0034789580
-
Monitoring the conformational fluctuations of DNA hairpins using single-pair fluorescence resonance energy transfer
-
Grunwell J.R., Glass J.L., Lacoste T.D., Deniz A.A., Chemla D.S., and Schultz P.G. Monitoring the conformational fluctuations of DNA hairpins using single-pair fluorescence resonance energy transfer. J. Am. Chem. Soc. 123 (2001) 4295-4303
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 4295-4303
-
-
Grunwell, J.R.1
Glass, J.L.2
Lacoste, T.D.3
Deniz, A.A.4
Chemla, D.S.5
Schultz, P.G.6
-
7
-
-
1942423138
-
Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy
-
Murphy M.C., Resnik I., Cheng W., Lohman T.M., and Ha T. Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy. Biophys. J. 86 (2004) 2530-2537
-
(2004)
Biophys. J.
, vol.86
, pp. 2530-2537
-
-
Murphy, M.C.1
Resnik, I.2
Cheng, W.3
Lohman, T.M.4
Ha, T.5
-
9
-
-
31544474375
-
DNA nanomechanical switches under folding kinetics control
-
Viasnoff V., Meller A., and Isambert H. DNA nanomechanical switches under folding kinetics control. Nanoletters 6 (2006) 101-104
-
(2006)
Nanoletters
, vol.6
, pp. 101-104
-
-
Viasnoff, V.1
Meller, A.2
Isambert, H.3
-
10
-
-
2542541215
-
Multistep energy transfer in single molecular photonic wires
-
Heilemann M., Tinnefeld P., Mosteiro G.S., Parajo M.G., van Hulst N.F., and Sauer M. Multistep energy transfer in single molecular photonic wires. J. Am. Chem. Soc. 126 (2004) 6514-6515
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 6514-6515
-
-
Heilemann, M.1
Tinnefeld, P.2
Mosteiro, G.S.3
Parajo, M.G.4
van Hulst, N.F.5
Sauer, M.6
-
11
-
-
3042751854
-
Nanometer-scale fluorescence resonance optical waveguides
-
Vyawahare S., Eyal S., Mathews K.D., and Quake S.R. Nanometer-scale fluorescence resonance optical waveguides. Nanoletters 4 (2004) 1035-1039
-
(2004)
Nanoletters
, vol.4
, pp. 1035-1039
-
-
Vyawahare, S.1
Eyal, S.2
Mathews, K.D.3
Quake, S.R.4
-
12
-
-
84981779372
-
Intermolecular energy migration and fluorescence
-
translated by R.S. Knox, Department of Physics and Astronomy, University of Rochester, Rochester, NY 14627
-
Förster T. Intermolecular energy migration and fluorescence. Ann. Physik. 2 (1948) 55-75 translated by R.S. Knox, Department of Physics and Astronomy, University of Rochester, Rochester, NY 14627
-
(1948)
Ann. Physik.
, vol.2
, pp. 55-75
-
-
Förster, T.1
-
13
-
-
0034732989
-
Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies
-
Norman D.G., Grainger R.J., Uhrín D., and Lilley D.M. Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies. Biochemistry 39 (2000) 6317-6324
-
(2000)
Biochemistry
, vol.39
, pp. 6317-6324
-
-
Norman, D.G.1
Grainger, R.J.2
Uhrín, D.3
Lilley, D.M.4
-
14
-
-
0036180593
-
Fluorescence resonance energy transfer (fret) and competing processes in donor-acceptor substituted DNA strands: a comparative study of ensemble and single-molecule data
-
Dietrich A., Buschmann V., Müller C., and Sauer M. Fluorescence resonance energy transfer (fret) and competing processes in donor-acceptor substituted DNA strands: a comparative study of ensemble and single-molecule data. Rev. Mol. Biotechnol. 82 (2002) 211-231
-
(2002)
Rev. Mol. Biotechnol.
, vol.82
, pp. 211-231
-
-
Dietrich, A.1
Buschmann, V.2
Müller, C.3
Sauer, M.4
-
15
-
-
4544265516
-
Spectroscopic characterization of fluorescein- and tetramethylrhodamine-labeled oligonucleotides and their complexes with a DNA template
-
Wang L., Gaigalas A.K., Blasic J., and Holden M.J. Spectroscopic characterization of fluorescein- and tetramethylrhodamine-labeled oligonucleotides and their complexes with a DNA template. Spectrochim. Acta Part A 60 (2004) 2741-2750
-
(2004)
Spectrochim. Acta Part A
, vol.60
, pp. 2741-2750
-
-
Wang, L.1
Gaigalas, A.K.2
Blasic, J.3
Holden, M.J.4
-
16
-
-
17844409052
-
Orientational dynamics and dye-DNA interactions in a dye-labeled DNA aptamer
-
Unruh J.R., Gokulrangan G., Lushington G.H., Johnson C.K., and Wilson G.S. Orientational dynamics and dye-DNA interactions in a dye-labeled DNA aptamer. Biophys. J. 88 (2005) 3455-3465
-
(2005)
Biophys. J.
, vol.88
, pp. 3455-3465
-
-
Unruh, J.R.1
Gokulrangan, G.2
Lushington, G.H.3
Johnson, C.K.4
Wilson, G.S.5
-
17
-
-
0035312659
-
Recent advances in fret: distance determination in protein-DNA complexes
-
Hillisch A., Lorenz M., and Diekmann S. Recent advances in fret: distance determination in protein-DNA complexes. Curr. Opin. Struct. Biol. 11 (2001) 201-207
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 201-207
-
-
Hillisch, A.1
Lorenz, M.2
Diekmann, S.3
-
18
-
-
0036177565
-
Kappa-squared: from nuisance to new sense
-
van der Meer B. Kappa-squared: from nuisance to new sense. Rev. Mol. Biotech. 82 (2002) 181-196
-
(2002)
Rev. Mol. Biotech.
, vol.82
, pp. 181-196
-
-
van der Meer, B.1
-
19
-
-
0028884014
-
Fluorescence resonance energy transfer spectroscopy is a reliable "ruler" for measuring structural changes in proteins
-
dos Remedios C.G., and Moens P.D.J. Fluorescence resonance energy transfer spectroscopy is a reliable "ruler" for measuring structural changes in proteins. J. Struct. Biol. 115 (1995) 175-185
-
(1995)
J. Struct. Biol.
, vol.115
, pp. 175-185
-
-
dos Remedios, C.G.1
Moens, P.D.J.2
-
20
-
-
0026640565
-
Orientation factor in steady-state and time-resolved resonance energy transfer measurements
-
Wu P., and Brand L. Orientation factor in steady-state and time-resolved resonance energy transfer measurements. Biochemistry 31 (1992) 7939-7947
-
(1992)
Biochemistry
, vol.31
, pp. 7939-7947
-
-
Wu, P.1
Brand, L.2
-
21
-
-
0018267881
-
Effect of the orientation of donor and acceptor on the probability of energy transfer involving electronic transitions of mixed polarization
-
Haas E., Katchalski-Katzir E., and Steinberg I.Z. Effect of the orientation of donor and acceptor on the probability of energy transfer involving electronic transitions of mixed polarization. Biochemistry 17 (1978) 5064-5070
-
(1978)
Biochemistry
, vol.17
, pp. 5064-5070
-
-
Haas, E.1
Katchalski-Katzir, E.2
Steinberg, I.Z.3
-
22
-
-
3142658038
-
Distance and orientation dependence of excitation transfer rates in conjugated systems: beyond the förster theory
-
Wong K.F., Bagchi B., and Rossky P.J. Distance and orientation dependence of excitation transfer rates in conjugated systems: beyond the förster theory. J. Phys. Chem. A 108 (2004) 5752-5763
-
(2004)
J. Phys. Chem. A
, vol.108
, pp. 5752-5763
-
-
Wong, K.F.1
Bagchi, B.2
Rossky, P.J.3
-
23
-
-
22244483819
-
Orientation control of fluorescence resonance energy transfer using DNA as a helical scaffold
-
Lewis F.D., Zhang L., and Zuo X. Orientation control of fluorescence resonance energy transfer using DNA as a helical scaffold. J. Am. Chem. Soc. 127 (2005) 10002-10003
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 10002-10003
-
-
Lewis, F.D.1
Zhang, L.2
Zuo, X.3
-
24
-
-
34247186195
-
-
University of California, San Francisco
-
Case D.A., Darden T.A., Cheatham III T.E., Simmerling C.L., Wang J., Duke R.E., Luo R., Merz K.M., Pearlman D.A., Crowley M., Walker R.C., Zhang W., Wang B., Hayik S., Roitberg A., Seabra G., Wong K.F., Paesani F., Wu X., Brozell S., Tsui V., Gohlke H., Yang L., Tan C., Mongan J., Hornak V., Cui G., Beroza P., Mathews D.H., Schafmeister C., Ross W.S., and Kollman P.A. AMBER 9 (2006), University of California, San Francisco
-
(2006)
AMBER 9
-
-
Case, D.A.1
Darden, T.A.2
Cheatham III, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Pearlman, D.A.9
Crowley, M.10
Walker, R.C.11
Zhang, W.12
Wang, B.13
Hayik, S.14
Roitberg, A.15
Seabra, G.16
Wong, K.F.17
Paesani, F.18
Wu, X.19
Brozell, S.20
Tsui, V.21
Gohlke, H.22
Yang, L.23
Tan, C.24
Mongan, J.25
Hornak, V.26
Cui, G.27
Beroza, P.28
Mathews, D.H.29
Schafmeister, C.30
Ross, W.S.31
Kollman, P.A.32
more..
-
25
-
-
0002636134
-
Pairwise solute descreening of solute charges from a dielectric medium
-
Hawkins G.D., Cramer C.J., and Truhlar D.G. Pairwise solute descreening of solute charges from a dielectric medium. Chem. Phys. Lett. 246 (1995) 122-129
-
(1995)
Chem. Phys. Lett.
, vol.246
, pp. 122-129
-
-
Hawkins, G.D.1
Cramer, C.J.2
Truhlar, D.G.3
-
26
-
-
0034701222
-
Molecular dynamics simulations of nucleic acids with a generalized born solvation model
-
Tsui V., and Case D.A. Molecular dynamics simulations of nucleic acids with a generalized born solvation model. J. Am. Chem. Soc. 122 (2000) 2489-2498
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 2489-2498
-
-
Tsui, V.1
Case, D.A.2
-
27
-
-
0037120830
-
Conformational heterogeneity observed in simulations of a pyrene-substituted DNA
-
Cui G., and Simmerling C. Conformational heterogeneity observed in simulations of a pyrene-substituted DNA. J. Am. Chem. Soc. 124 (2002) 12154-12164
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 12154-12164
-
-
Cui, G.1
Simmerling, C.2
-
28
-
-
4243606918
-
Calculation of couplings and energy-transfer pathways between the pigments of lh2 by the ab initio transition density cube method
-
Krueger B.P., Scholes G.D., and Fleming G.R. Calculation of couplings and energy-transfer pathways between the pigments of lh2 by the ab initio transition density cube method. J. Phys. Chem. B 102 (1998) 5378-5386
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 5378-5386
-
-
Krueger, B.P.1
Scholes, G.D.2
Fleming, G.R.3
-
30
-
-
22144492905
-
Accurate fret measurements within single diffusing biomolecules using alternating-laser excitation
-
Lee N.K., Kapanidis A.N., Wang Y., Michalet X., Mukhopadhyay J., Ebright R.H., and Weiss S. Accurate fret measurements within single diffusing biomolecules using alternating-laser excitation. Biophys. J. 88 (2005) 2939-2953
-
(2005)
Biophys. J.
, vol.88
, pp. 2939-2953
-
-
Lee, N.K.1
Kapanidis, A.N.2
Wang, Y.3
Michalet, X.4
Mukhopadhyay, J.5
Ebright, R.H.6
Weiss, S.7
-
31
-
-
0033231324
-
New donor-acceptor pair for fluorescent immunoassays by energy transfer
-
Schobel U., Egelhaaf H.-J., Brecht A., Oelkrug D., and Gauglitz G. New donor-acceptor pair for fluorescent immunoassays by energy transfer. Bioconjug. Chem. 10 (1999) 1107-1114
-
(1999)
Bioconjug. Chem.
, vol.10
, pp. 1107-1114
-
-
Schobel, U.1
Egelhaaf, H.-J.2
Brecht, A.3
Oelkrug, D.4
Gauglitz, G.5
-
32
-
-
0029900789
-
Conformational transitions monitored for single molecules in solution
-
Edman L., Mets U., and Rigler R. Conformational transitions monitored for single molecules in solution. Proc. Natl. Acad. Sci. USA 93 (1996) 6710-6715
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6710-6715
-
-
Edman, L.1
Mets, U.2
Rigler, R.3
-
33
-
-
0000173569
-
Long-ranged electron interaction between carboxytetramethylrhodamine and fluoresceinisothiocyanate bound covalently to DNA, as evidenced by fluorescence quenching
-
Kojima H., Spataru N., Kawata Y., Yano S., and Vartires I. Long-ranged electron interaction between carboxytetramethylrhodamine and fluoresceinisothiocyanate bound covalently to DNA, as evidenced by fluorescence quenching. J. Phys. Chem. B 102 (1998) 9981-9984
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 9981-9984
-
-
Kojima, H.1
Spataru, N.2
Kawata, Y.3
Yano, S.4
Vartires, I.5
-
35
-
-
0035793105
-
2-Aminopurine fluorescence quenching and lifetimes: role of base stacking
-
Jean J.M., and Hall K.B. 2-Aminopurine fluorescence quenching and lifetimes: role of base stacking. Proc. Natl. Acad. Sci. 98 (2001) 37-41
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 37-41
-
-
Jean, J.M.1
Hall, K.B.2
|