P-BOSS: A new filtering method for treasure hunting in metabolomics

Journal of Chromatography A

Volumn 1159, Issue 1-2, 2007, Pages 142-148

  Morohashi, Mineo ^a   Shimizu, Kaori ^b   Ohashi, Yoshiaki ^a,b   Abe, Junji ^a   Mori, Hirotada ^b,c   Tomita, Masaru ^a,b   Soga, Tomoyoshi ^a,b  

^a Keio University and Human Metabolome Technologies Inc   (Japan)

^b KEIO UNIVERSITY   (Japan)

^c NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

AIC; Biomarker; CE MS; CE TOFMS; Metabolome

Indexed keywords

METABOLOMICS; OMIC DATA; TREASURE HUNTING; TRYPTOPHAN;

BIOSYNTHESIS; CAPILLARY ELECTROPHORESIS; DATA ACQUISITION; ELECTROSPRAY IONIZATION; ESCHERICHIA COLI; METABOLISM;

BIOMARKERS;

BIOLOGICAL MARKER; PURINE; TRYPTOPHAN;

ARTICLE; BIOSYNTHESIS; ELECTROSPRAY; ESCHERICHIA COLI; FILTRATION; MEASUREMENT; METABOLOMICS; MUTANT; NOISE; NONHUMAN; PERFORMANCE; PRIORITY JOURNAL; SCREENING; TIME OF FLIGHT MASS SPECTROMETRY;

ALGORITHMS; BIOLOGICAL MARKERS; COMPUTATIONAL BIOLOGY; ELECTROPHORESIS, CAPILLARY; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; PROTEIN ARRAY ANALYSIS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING, COMPUTER-ASSISTED; SOFTWARE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ESCHERICHIA COLI;

EID: 34447272052     PISSN: 00219673     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chroma.2007.03.054     Document Type: Article

References (22)

1. Fiehn O. Plant Mol. Biol. 48 (2002) 155
2. Fiehn O., Kopka J., Dormann P., Altmann T., Trethewey R.N., and Willmitzer L. Nat. Biotechnol. 18 (2000) 1157
3. Fiehn O., Kopka J., Trethewey R.N., and Willmitzer L. Anal. Chem. 72 (2000) 3573
4. Reo N.V. Drug Chem. Toxicol. 25 (2002) 375
5. Harrigan G.G., LaPlante R.H., Cosma G.N., Cockerell G., Goodacre R., Maddox J.F., Luyendyk J.P., Ganey P.E., and Roth R.A. Toxicol. Lett. 146 (2004) 197
6. Soga T., Ohashi Y., Ueno Y., Naraoka H., Tomita M., and Nishioka T. J. Proteome Res. 2 (2003) 488
7. Soga T., Ueno Y., Naraoka H., Matsuda K., Tomita M., and Nishioka T. Anal. Chem. 74 (2002) 6224
8. Soga T., Ueno Y., Naraoka H., Ohashi Y., Tomita M., and Nishioka T. Anal. Chem. 74 (2002) 2233
9. Soga T., Baran R., Suematsu M., Ueno Y., Ikeda S., Sakurakawa T., Kakazu Y., Ishikawa T., Robert M., Nishioka T., and Tomita M. J. Biol. Chem. 281 (2006) 16768
10. Broadhurst D.I., and Kell D.B. Metabolomics 2 (2006) 171
11. Jarvis R.M., and Goodacre R. Bioinformatics 21 (2005) 860
12. Kell D.B. Curr. Opin. Microbiol. 7 (2004) 296
13. Hirai M.Y., Yano M., Goodenowe D.B., Kanaya S., Kimura T., Awazuhara M., Arita M., Fujiwara T., and Saito K. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 10205
14. Raamsdonk L.M., Teusink B., Broadhurst D., Zhang N., Hayes A., Walsh M.C., Berden J.A., Brindle K.M., Kell D.B., Rowland J.J., Westerhoff H.V., van Dam K., and Oliver S.G. Nat. Biotechnol. 19 (2001) 45
15. Taylor J., King R.D., Altmann T., and Fiehn O. Bioinformatics 18 Suppl. 2 (2002) S241
16. Weckwerth W., and Morgenthal K. Drug Discov. Today 10 (2005) 1551
17. Styczynski M.P., Moxley J.F., Tong L.V., Walther J.L., Jensen K.L., and Stephanopoulos G.N. Anal. Chem. 79 (2007) 966
18. Baba T., Ara T., Hasegawa M., Takai Y., Okumura Y., Baba M., Datsenko K.A., Tomita M., Wanner B.L., and Mori H. Mol. Syst. Biol. (2006)
19. Datsenko K.A., and Wanner B.L. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 6640
20. Stein S.E. J. Am. Soc. Mass Spectrom. 10 (1999) 770
21. Kadota K., Miki R., Bono H., Shimizu K., Okazaki Y., and Hayashizaki Y. Physiol. Genomics 4 (2001) 183
22. Kadota K., Nishimura S., Bono H., Nakamura S., Hayashizaki Y., Okazaki Y., and Takahashi K. Physiol. Genomics 12 (2003) 251