Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants

Plant Cell

Volumn 19, Issue 5, 2007, Pages 1695-1708

  Anand, Ajith ^a   Krichevsky, Alexander ^b   Schornack, Sebastian ^c   Lahaye, Thomas ^c   Tzfira, Tzvi ^d   Tang, Yuhong ^a   Citovsky, Vitaly ^b   Mysore, Kirankumar S ^a  

^a PLANT BIOLOGY DIVISION   (United States)

^b STONY BROOK UNIVERSITY   (United States)

^c MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^d UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; DNA; GENE EXPRESSION; GENETIC ENGINEERING; PROTEINS;

AGROBACTERIUM STRAIN; GENE SILENCING; PROMOTER-TRAP VECTOR; TRANSIENT TRANSFORMATION;

PLANTS (BOTANY);

BIOLOGICAL TESTS; GENETIC ENGINEERING; NUCLEIC ACIDS; PLANTS; PROTEINS;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; ANIMALIA; ARABIDOPSIS; ARABIDOPSIS THALIANA; NICOTIANA BENTHAMIANA; RHIZOBIUM;

EID: 34347382316     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.106.042903     Document Type: Article

References (55)

1. Anand, A., and Mysore, K.S. (2006). Agrobacterium-biology and crown gall disease. In Plant-Associated Bacteria, S.S. Gnanamanickam, ed (Dordrecht, The Netherlands: Springer Science), pp. 359-384.
2. Anand, A., Trick, H.N., Gill, B.S., and Muthukrishnan, S. (2003b). Stable transgene expression and random gene silencing in wheat. Plant Biotechnol. J. 1: 241-252.
3. Anand, A., Zarir, V., Ryu, C.M., Kang, L., del-Pozo, O., Martin, G.B., and Mysore, K.S. (2007). Identification of plant genes involved in Agrobacterium-mediated transformation by using virus-induced gene silencing as a functional genomics tool. Mol. Plant Microbe Interact. 20: 41-52.
4. Anand, A., Zhou, T., Trick, H.N., Gill, B.S., Bockus, W.W., and Muthukrishnan, S. (2003a). Greenhouse and field testing of transgenic wheat plants stably expressing genes for thaumatin-like protein, chitinase and glucanase against Fusarium graminearum. J. Exp. Bot. 54: 1101-1111.
5. Ballas, N., and Citovsky, V. (1997). Nuclear localization signal binding protein from Arabidopsis mediates nuclear import of Agrobacterium VirD2 protein. Proc. Natl. Acad. Sci. USA 94: 10723-10728.
6. Bartel, P., Chien, C., Sternglanz, R., and Fields, S. (1993). Elimination of false positives that arise in using the two-hybrid system. Biotechniques 14: 920-924.
7. Burch-Smith, T.M., Anderson, J.C., Martin, G.B., and Dinesh-Kumar, S.P. (2004). Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant J. 39: 734-746.
8. Cascales, E., and Christie, P.J. (2004). Definition of a bacterial type IV secretion pathway for a DNA substrate. Science 304: 1170-1173.
9. Christie, P.J. (2004). Type IV secretion: The Agrobacterium VirB/D4 and related conjugation systems. Biochim. Biophys. Acta 1694: 219-234.
10. Collart, M.A. (2003). Global control of gene expression in yeast by the Ccr4-Not complex. Gene 313: 1-16.
11. Collart, M.A., and Struhl, K. (1993). CDC39 an essential nuclear protein that negatively regulates transcription and differentially affects the constitutive and inducible his3 promoters. EMBO J. 12: 177-186.
12. Collart, M.A., and Struhl, K. (1994). NOT1 (CDC39), NOT2 (CDC35), NOT3 and NOT4 encode a global-negative regulator of transcription that differentially affects TATA-element utilization. Genes Dev. 8: 525-537.
13. Collart, M.A., and Timmers, H.T. (2004). The eukaryotic Ccr4-Not complex: A regulatory platform integrating mRNA metabolism with cellular signaling pathways? Prog. Nucleic Acid Res. Mol. Biol. 77: 289-322.
14. Dietrich, C., and Maiss, E. (2002). Red fluorescent protein DsRed from Discosoma sp. as a reporter protein in higher plants. Biotechniques 32: 286-293.
15. Ditt, R.F., Kerr, F.K., de Figueiredo, P., Delrow, J., Comai, L., and Nester, E.W. (2006). The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. Mol. Plant Microbe Interact. 19: 665-681.
16. Ditt, R.F., Nester, E.W., and Comai, L. (2001). Plant gene expression response to Agrobacterium tumefaciens. Proc. Natl. Acad. Sci. USA 98: 10954-10959.
17. Dozmorov, I., and Centola, M. (2003). An associative analysis of gene expression array data. Bioinformatics 22: 204-211.
18. Endo, M., Ishikawa, Y., Osakabe, K., Nakayama, S., Kaya, H., Araki, T., Shibahara, K., Abe, K., Ichikawa, H., Valentine, L., Hohn, B., and Toki, S. (2006). Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants. EMBO J. 25: 5579-5590.
19. Fischle, W., Wang, Y., and Allis, C.D. (2003). Histone and chromatin cross-talk. Curr. Opin. Cell Biol. 15: 172-183.
20. Frolov, M.V., Benevolenskaya, E.V., and Birchler, J.A. (1998). Regena (Rga), a Drosophila homolog of the global negative transcriptional regulator CDC36 (NOT2) from yeast, modifies gene expression and suppresses position effect variegation. Genetics 148: 317-330.
21. Gelvin, S.B. (2003). Agrobacterium-mediated plant transformation: The biology behind the "gene-jockeying" tool. Microbiol. Mol. Biol. Rev. 67: 16-37.
22. Goodin, M.M., Dietzgen, R.G., Schichnes, D., Ruzin, S., and Jackson, A.O. (2002). pGD vectors: Versatile tools for the expression of green and red fluorescent protein fusions in agroinfiltrated plant leaves. Plant J. 31: 375-383.
23. Guralnick, B., Thomsen, G., and Citovsky, V. (1996). Transport of DNA into the nuclei of Xenopus oocytes by a modified VirE2 protein of Agrobacterium. Plant Cell 8: 363-373.
24. Hwang, H.-H., and Gelvin, S.B. (2004). Plant proteins that interact with VirB2, the Agrobacterium tumefaciens pilin protein, mediate plant transformation. Plant Cell 16: 3148-3167.
25. Jefferson, R.A., Kavanagh, T.A., and Bevan, M.W. (1987). GUS fusions: β-Glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 901-907.
26. Kirik, A., Pecinka, A., Wendeler, E., and Reiss, B. (2006). The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants. Plant Cell 18: 2431-2442.
27. Li, J., Krichevsky, A., Vaidya, M., Tzfira, T., and Citovsky, V. (2005a). Uncoupling of the functions of the Arabidopsis VIP1 protein in transient and stable plant genetic transformation by Agrobacterium. Proc. Natl. Acad. Sci. USA 102: 5733-5738.
28. Li, J., Vaidya, M., White, C., Vainstein, A., Citovsky, V., and Tzfira, T. (2005b). Involvement of KU80 in T-DNA integration in plant cells. Proc. Natl. Acad. Sci. USA 102: 19231-19236.
29. Liu, H.-Y., Badarinarayana, V., Audino, D.C., Rappsilber, J., Mann, M., and Denis, C.L. (1998). The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively. EMBO J. 17: 1096-1106.
30. Liu, Y., Schiff, M., and Dinesh-Kumar, P. (2002a). Virus-induced gene silencing in tomato. Plant J. 31: 777-786.
31. Liu, Y., Schiff, M., Marathe, R., and Dinesh-Kumar, P. (2002b). Tobacco Rar1, EDS1 and NPR1/NIMI1 like genes are required for N-mediated resistance to tobacco mosaic virus. Plant J. 30: 415-429.
32. Mysore, K.S., Bassuner, B., Deng, X.B., Darbinian, N.S., Motchoulski, A., Ream, W., and Gelvin, S.B. (1998). Role of the Agrobacterium tumefaciens VirD2 protein in T-DNA transfer and integration. Mol. Plant Microbe Interact. 11: 668-683.
33. Mysore, K.S., Nam, J., and Gelvin, S.B. (2000). An Arabidopsis histone H2A mutant is deficient in Agrobacterium T-DNA integration. Proc. Natl. Acad. Sci. USA 97: 948-953.
34. Nam, J., Mysore, K.S., Zheng, C., Knue, M.K., Matthysse, A.G., and Gelvin, G.B. (1999). Identification of T-DNA tagged Arabidopsis mutants that are resistant to transformation by Agrobacterium. Mol. Gen. Genet. 261: 429-438.
35. Oberholzer, U., and Collart, M.A. (1998). Characterization of NOT5 that encodes a new component of the Not protein complex. Gene 207: 61-69.
36. Park, H., and Sternglanz, R. (1998). Two separate conserved domains of eukaryotic DNA topoisomerase I bind to each other and reconstitute enzymatic activity. Chromosoma 107: 211-215.
37. Rosso, M.G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., and Weisshaar, B. (2003). An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol. Biol. 53: 247-259.
38. Ryu, C.-M., Anand, A., Kang, L., and Mysore, K.S. (2004). Agrodrench: A novel and effective agroinoculation method for virus-induced gene silencing in roots and diverse Solanaceous species. Plant J. 40: 322-331.
39. Schultheiss, H., Dechert, C., Kogel, K.H., and Hückelhoven, R. (2003). Functional analysis of barely RAC/ROP G-protein family members in susceptibility to the powdery mildew fungus. Plant J. 36: 589-601.
40. Storey, J.D., and Tibshirani, R. (2003). Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100: 9440-9445.
41. Tian, G.-W., et al. (2004). High-throughput fluorescent tagging of full-length Arabidopsis gene products in planta. Plant Physiol. 135: 25-38.
42. Tzfira, T., and Citovsky, V. (2002). Partners-in-infection: Host proteins involved in the transformation of plant cells by Agrobacterium. Trends Cell Biol. 12: 121-129.
43. Tzfira, T., and Citovsky, V. (2006). Agrobacterium-mediated genetic transformation of plants: Biology and biotechnology. Curr. Opin. Biotechnol. 17: 147-154.
44. Tzfira, T., Li, J., Lacroix, B., and Citovsky, V. (2004). Agrobacterium T-DNA integration: Molecules and models. Trends Genet. 20: 375-383.
45. Tzfira, T., Rhee, Y., Chen, M.-H., Kunik, T., and Citovsky, V. (2000). Nucleic acid transport in plant-microbe interactions: The molecules that walk through the Walls. Annu. Rev. Microbiol. 54: 187-219.
46. Tzfira, T., Vaidya, M., and Citovsky, V. (2001). VIP1, an Arabidopsis protein that interacts with Agrobacterium VirE2, is involved in VirE2 nuclear import and Agrobacterium infectivity. EMBO J. 20: 3596-3607.
47. Veena, Jiang, H., Doerge, R.W., and Gelvin, S.B. (2003). Transfer of T-DNA and Vir proteins to plant cells by Agrobacterium tumefaciens induces expression of host genes involved in mediating transformation and suppresses host defense gene expression. Plant J. 35: 219-226.
48. Vergunst, A.C., Schrammeijer, B., den Dulk-Ras, A., de Vlaam, C.M.T., Regensburg-Tuink, T.J., and Hooykaas, P.J. (2000). VirB/D4-dependent protein translocation from Agrobacterium into plant cells. Science 290: 979-982.
49. Vergunst, A.C., van Lier, M.C.M., den Dulk-Ras, A., and Hooykaas, P.J. (2003). Recognition of the Agrobacterium VirE2 translocation signal by the VirB/D4 transport system does not require VirE1. Plant Physiol. 133: 978-988.
50. Walter, M., Chaban, C., Schutze, K., Batistic, O., Weckermann, K., Nake, C., Blazevic, D., Grefen, C., Schumacher, K., Oecking, C., Harter, K., and Kudla, J. (2004). Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J. 40: 428-438.
51. Wang, B.-B., and Brendel, V. (2006). Genomewide comparative analysis of alternative splicing in plants. Proc. Natl. Acad. Sci. USA 103: 7175-7180.
52. Wroblewski, T., Tomczak, A., and Michelmore, R. (2005). Optimization of Agrobacterium-mediated transient assays of gene expression in lettuce, tomato and Arabidopsis. Plant Biotechnol. J. 3: 259-273.
53. Yi, H., Sardesai, N., Fujinuma, T., Chan, C.W., Veena, and Gelvin, S.B. (2006). Constitutive expression exposes functional redundancy between the Arabidopsis histone H2A gene HTA1 and other H2A gene family members. Plant Cell 18: 1575-1589.
54. Yi, H.C., Mysore, K.S., and Gelvin, S.B. (2002). Expression of the Arabidopsis histone H2A-1 gene correlates with susceptibility to Agrobacterium transformation. Plant J. 32: 285-298.
55. Zhu, Y., et al. (2003). Identification of Arabidopsis rat mutants. Plant Physiol. 132: 494-505.