-
1
-
-
0142077573
-
Topology of evolving networks: Local events and universality
-
ALBERT, R., and BARABASI, A.L. (2000). Topology of evolving networks: local events and universality. Phys Rev Lett 85, 5234-5237.
-
(2000)
Phys Rev Lett
, vol.85
, pp. 5234-5237
-
-
ALBERT, R.1
BARABASI, A.L.2
-
2
-
-
34347359807
-
From reductionist to constructionist, but only if we integrate
-
AURORA, R., and SPENCE, P. (1999). From reductionist to constructionist, but only if we integrate. Trends Pharmainform 2, 37-39.
-
(1999)
Trends Pharmainform
, vol.2
, pp. 37-39
-
-
AURORA, R.1
SPENCE, P.2
-
4
-
-
16844376909
-
Reverse engineering of regulatory networks in human B cells
-
BASSO, K., MARGOLIN, A.A., STOLOVITZKY, G., KLEIN, U., DALLA-FAVERA, R., and CALIFANO, A. (2005). Reverse engineering of regulatory networks in human B cells. Nat Genet 37, 382-390.
-
(2005)
Nat Genet
, vol.37
, pp. 382-390
-
-
BASSO, K.1
MARGOLIN, A.A.2
STOLOVITZKY, G.3
KLEIN, U.4
DALLA-FAVERA, R.5
CALIFANO, A.6
-
5
-
-
0034003112
-
Iron-sulfur proteins: Ancient structures, still full of surprises
-
BEINERT, H. (2000). Iron-sulfur proteins: ancient structures, still full of surprises. J Biol Inorg Chem 5, 2-15.
-
(2000)
J Biol Inorg Chem
, vol.5
, pp. 2-15
-
-
BEINERT, H.1
-
6
-
-
0033120863
-
Fe-S proteins in sensing and regulatory functions
-
BEINERT, H., and KILEY, P.J. (1999). Fe-S proteins in sensing and regulatory functions. Curr Opin Chem Biol 3, 152-157.
-
(1999)
Curr Opin Chem Biol
, vol.3
, pp. 152-157
-
-
BEINERT, H.1
KILEY, P.J.2
-
7
-
-
19344374050
-
Similarities and differences in genome-wide expression data of six organisms
-
BERGMANN, S., IHMELS, J., and BARKAI, N. (2004). Similarities and differences in genome-wide expression data of six organisms. PLoS Biol 2, E9.
-
(2004)
PLoS Biol
, vol.2
-
-
BERGMANN, S.1
IHMELS, J.2
BARKAI, N.3
-
8
-
-
0034710924
-
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
-
BUTTE, A.J., TAMAYO, P., SLONIM, D., GOLUB, T.R., and KOHANE, I.S. (2000). Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. Proc Natl Acad Sci USA 97, 12182-12186.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 12182-12186
-
-
BUTTE, A.J.1
TAMAYO, P.2
SLONIM, D.3
GOLUB, T.R.4
KOHANE, I.S.5
-
9
-
-
0035474697
-
Are randomly grown graphs really random?
-
CALLAWAY, D.S., HOPCROFT, J.E., KLEINBERG, J.M., NEWMAN, M.E., and STROGATZ, S.H. (2001). Are randomly grown graphs really random? Phys Rev E Stat Nonlin Soft Matter Phys 64, 041902.
-
(2001)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.64
, pp. 041902
-
-
CALLAWAY, D.S.1
HOPCROFT, J.E.2
KLEINBERG, J.M.3
NEWMAN, M.E.4
STROGATZ, S.H.5
-
10
-
-
0037396730
-
The Gene Ontology Annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
-
CAMON, E., MAGRANE, M., BARRELL, D., BINNS, D., FLEISCHMANN, W., KERSEY, P., et al. (2003). The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 13, 662-672.
-
(2003)
Genome Res
, vol.13
, pp. 662-672
-
-
CAMON, E.1
MAGRANE, M.2
BARRELL, D.3
BINNS, D.4
FLEISCHMANN, W.5
KERSEY, P.6
-
11
-
-
84947318637
-
Locally weighted regression: An approach to regression analysis by local fitting
-
CLEVELAND, W.S., and DEVLIN, S.J. (1988). Locally weighted regression: an approach to regression analysis by local fitting. J Am Stat Assoc 83, 596-610.
-
(1988)
J Am Stat Assoc
, vol.83
, pp. 596-610
-
-
CLEVELAND, W.S.1
DEVLIN, S.J.2
-
12
-
-
0004116989
-
-
MIT Press; McGraw-Hill, Cambridge, MA
-
CORMEN, T.H., LEISERSON, C.E., and RIVEST, R.L. (1990). Introduction to Algorithms. (MIT Press; McGraw-Hill, Cambridge, MA).
-
(1990)
Introduction to Algorithms
-
-
CORMEN, T.H.1
LEISERSON, C.E.2
RIVEST, R.L.3
-
13
-
-
0037276175
-
Statistical tests for differential expression in cDNA microarray experiments
-
CUI, X., and CHURCHILL, G.A. (2003). Statistical tests for differential expression in cDNA microarray experiments. Genome Biol 4, 210.
-
(2003)
Genome Biol
, vol.4
, pp. 210
-
-
CUI, X.1
CHURCHILL, G.A.2
-
14
-
-
0037452576
-
Regulatory gene networks and the properties of the developmental process
-
DAVIDSON, E.H., MCCLAY, D.R., and HOOD, L. (2003). Regulatory gene networks and the properties of the developmental process. Proc Natl Acad Sci USA 100, 1475-1480.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1475-1480
-
-
DAVIDSON, E.H.1
MCCLAY, D.R.2
HOOD, L.3
-
15
-
-
0033736476
-
Genetic network inference: From co-expression clustering to reverse engineering
-
D'HAESELEER, P., LIANG, S., and SOMOGYI, R. (2000). Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics 16, 707-726.
-
(2000)
Bioinformatics
, vol.16
, pp. 707-726
-
-
D'HAESELEER, P.1
LIANG, S.2
SOMOGYI, R.3
-
16
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
EISEN, M.B., SPELLMAN, P.T., BROWN, P.O., and BOTSTEIN, D. (1998). Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95, 14863-14868.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 14863-14868
-
-
EISEN, M.B.1
SPELLMAN, P.T.2
BROWN, P.O.3
BOTSTEIN, D.4
-
17
-
-
0032504117
-
Biogeochemical controls and feedbacks on ocean primary production
-
FALKOWSKI, P.G., BARBER, R.T., and SMETACEK, V.V. (1998). Biogeochemical controls and feedbacks on ocean primary production. Science 281, 200-207.
-
(1998)
Science
, vol.281
, pp. 200-207
-
-
FALKOWSKI, P.G.1
BARBER, R.T.2
SMETACEK, V.V.3
-
18
-
-
0033764169
-
The small world of metabolism
-
FELL, D.A., and WAGNER, A. (2000). The small world of metabolism. Nat Biotechnol 18, 1121-1122.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 1121-1122
-
-
FELL, D.A.1
WAGNER, A.2
-
19
-
-
2442443097
-
Phosphatidylglycerol and sulfoquinovosyldiacylglycerol: Anionic membrane lipids and phosphate regulation
-
FRENTZEN, M. (2004). Phosphatidylglycerol and sulfoquinovosyldiacylglycerol: anionic membrane lipids and phosphate regulation. Curr Opin Plant Biol 7, 270-276.
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 270-276
-
-
FRENTZEN, M.1
-
20
-
-
0023957783
-
Changes in sulfate transport characteristics and protein composition of Anacystis nidulans R2 during sulfur deprivation
-
GREEN, L.S., and GROSSMAN, A.R. (1988). Changes in sulfate transport characteristics and protein composition of Anacystis nidulans R2 during sulfur deprivation. J Bacteriol 170, 583-587.
-
(1988)
J Bacteriol
, vol.170
, pp. 583-587
-
-
GREEN, L.S.1
GROSSMAN, A.R.2
-
21
-
-
0035989861
-
Molecular and biochemical analysis of the enzymes of cysteine biosynthesis in the plant Arabidopsis thaliana
-
HELL, R., JOST, R., BERKOWITZ, O., and WIRTZ, M. (2002). Molecular and biochemical analysis of the enzymes of cysteine biosynthesis in the plant Arabidopsis thaliana. Amino Acids 22, 245-257.
-
(2002)
Amino Acids
, vol.22
, pp. 245-257
-
-
HELL, R.1
JOST, R.2
BERKOWITZ, O.3
WIRTZ, M.4
-
22
-
-
0035037364
-
DNA microarray analysis of cyanobacterial gene expression during acclimation to high light
-
HIHARA, Y., KAMEI, A., KANEHISA, M., KAPLAN, A., and IKEUCHI, M. (2001). DNA microarray analysis of cyanobacterial gene expression during acclimation to high light. Plant Cell 13, 793-806.
-
(2001)
Plant Cell
, vol.13
, pp. 793-806
-
-
HIHARA, Y.1
KAMEI, A.2
KANEHISA, M.3
KAPLAN, A.4
IKEUCHI, M.5
-
23
-
-
21844472259
-
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics
-
HIRAI, M.Y., KLEIN, M., FUJIKAWA, Y., YANO, M., GOODENOWE, D.B., YAMAZAKI, Y., et al. (2005). Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. J Biol Chem 280, 25590-25595.
-
(2005)
J Biol Chem
, vol.280
, pp. 25590-25595
-
-
HIRAI, M.Y.1
KLEIN, M.2
FUJIKAWA, Y.3
YANO, M.4
GOODENOWE, D.B.5
YAMAZAKI, Y.6
-
24
-
-
3042750616
-
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
-
HIRAI, M.Y., YANO, M., GOODENOWE, D.B., KANAYA, S., KIMURA, T., AWAZUHARA, M., et al. (2004). Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci USA 101, 10205-10210.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 10205-10210
-
-
HIRAI, M.Y.1
YANO, M.2
GOODENOWE, D.B.3
KANAYA, S.4
KIMURA, T.5
AWAZUHARA, M.6
-
25
-
-
0032559025
-
Quinol and cytochrome oxidases in the cyanobacterium Synechocystis sp. PCC 6803
-
HOWITT, C.A., and VERMAAS, W.F. (1998). Quinol and cytochrome oxidases in the cyanobacterium Synechocystis sp. PCC 6803. Biochemistry 37, 17944-17951.
-
(1998)
Biochemistry
, vol.37
, pp. 17944-17951
-
-
HOWITT, C.A.1
VERMAAS, W.F.2
-
26
-
-
2942582320
-
Control of photosynthetic and high-light-responsive genes by the histidine kinase DspA: Negative and positive regulation and interactions between signal transduction pathways
-
HSIAO, H.Y., HE, Q., VAN WAASBERGEN, L.G., and GROSSMAN, A.R. (2004). Control of photosynthetic and high-light-responsive genes by the histidine kinase DspA: negative and positive regulation and interactions between signal transduction pathways. J Bacteriol 186, 3882-3888.
-
(2004)
J Bacteriol
, vol.186
, pp. 3882-3888
-
-
HSIAO, H.Y.1
HE, Q.2
VAN WAASBERGEN, L.G.3
GROSSMAN, A.R.4
-
27
-
-
0034609791
-
The large-scale organization of metabolic networks
-
JEONG, H., TOMBOR, B., ALBERT, R., OLTVAI, Z.N., and BARABASI, A.L. (2000). The large-scale organization of metabolic networks. Nature 407, 651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
JEONG, H.1
TOMBOR, B.2
ALBERT, R.3
OLTVAI, Z.N.4
BARABASI, A.L.5
-
28
-
-
6344241652
-
Conservation and coevolution in the scale-free human gene coexpression network
-
JORDAN, I.K., MARINO-RAMIREZ, L., WOLF, Y.I., and KOONIN, E.V. (2004). Conservation and coevolution in the scale-free human gene coexpression network. Mol Biol Evol 21, 2058-2070.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 2058-2070
-
-
JORDAN, I.K.1
MARINO-RAMIREZ, L.2
WOLF, Y.I.3
KOONIN, E.V.4
-
29
-
-
3543020338
-
Critical roles of bacterioferritins in iron storage and proliferation of cyanobacteria
-
KEREN, N., AURORA, R., and PAKRASI, H.B. (2004). Critical roles of bacterioferritins in iron storage and proliferation of cyanobacteria. Plant Physiol 135, 1666-1673.
-
(2004)
Plant Physiol
, vol.135
, pp. 1666-1673
-
-
KEREN, N.1
AURORA, R.2
PAKRASI, H.B.3
-
30
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
KERR, M.K., MARTIN, M., and CHURCHILL, G.A. (2000). Analysis of variance for gene expression microarray data. J Comput Biol 7, 819-837.
-
(2000)
J Comput Biol
, vol.7
, pp. 819-837
-
-
KERR, M.K.1
MARTIN, M.2
CHURCHILL, G.A.3
-
31
-
-
29944445891
-
Iron-sulfur cluster biosynthesis in photosynthetic organisms
-
KESSLER, D., and PAPENBROCK, J. (2005). Iron-sulfur cluster biosynthesis in photosynthetic organisms. Photosynth Research 86, 391-407.
-
(2005)
Photosynth Research
, vol.86
, pp. 391-407
-
-
KESSLER, D.1
PAPENBROCK, J.2
-
32
-
-
0038352097
-
The role of Fe-S proteins in sensing and regulation in bacteria
-
KILEY, P.J., and BEINERT, H. (2003). The role of Fe-S proteins in sensing and regulation in bacteria. Curr Opin Microbiol 6, 181-185.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 181-185
-
-
KILEY, P.J.1
BEINERT, H.2
-
33
-
-
7644238181
-
Biological robustness
-
KITANO, H. (2004). Biological robustness. Nat Rev Genet 5, 826-837.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 826-837
-
-
KITANO, H.1
-
35
-
-
0038217829
-
Vector algebra in the analysis of genome-wide expression data
-
RESEARCH0011
-
KURUVILLA, F.G., PARK, P.J., and SCHREIBER, S.L. (2002). Vector algebra in the analysis of genome-wide expression data. Genome Biol 3, RESEARCH0011.
-
(2002)
Genome Biol
, vol.3
-
-
KURUVILLA, F.G.1
PARK, P.J.2
SCHREIBER, S.L.3
-
36
-
-
0034570872
-
A gene network inference method from continuous-value gene expression data of wild-type and mutants. Genome Inform Ser Workshop
-
KYODA, K.M., MOROHASHI, M., ONAMI, S., and KITANO, H. (2000). A gene network inference method from continuous-value gene expression data of wild-type and mutants. Genome Inform Ser Workshop Genome Inform 11, 196-204.
-
(2000)
Genome Inform
, vol.11
, pp. 196-204
-
-
KYODA, K.M.1
MOROHASHI, M.2
ONAMI, S.3
KITANO, H.4
-
37
-
-
0025793667
-
Characterization and mutagenesis of sulfur-regulated genes in a cyanobacterium: Evidence for function in sulfate transport
-
LAUDENBACH, D.E., and GROSSMAN, A.R. (1991). Characterization and mutagenesis of sulfur-regulated genes in a cyanobacterium: evidence for function in sulfate transport. J Bacteriol 173, 2739-2750.
-
(1991)
J Bacteriol
, vol.173
, pp. 2739-2750
-
-
LAUDENBACH, D.E.1
GROSSMAN, A.R.2
-
38
-
-
0034667792
-
Orchestrated response: A symphony of transcription factors for gene control
-
LEMON, B., and TJIAN, R. (2000). Orchestrated response: a symphony of transcription factors for gene control. Genes Dev 14, 2551-2569.
-
(2000)
Genes Dev
, vol.14
, pp. 2551-2569
-
-
LEMON, B.1
TJIAN, R.2
-
39
-
-
0142210288
-
Topology of gene expression networks as revealed by data mining and modeling
-
LUKASHIN, A.V., LUKASHEV, M.E., and FUCHS, R. (2003). Topology of gene expression networks as revealed by data mining and modeling. Bioinformatics 19, 1909-1916.
-
(2003)
Bioinformatics
, vol.19
, pp. 1909-1916
-
-
LUKASHIN, A.V.1
LUKASHEV, M.E.2
FUCHS, R.3
-
40
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
MA, H., and ZENG, A.P. (2003). Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 19, 270-277.
-
(2003)
Bioinformatics
, vol.19
, pp. 270-277
-
-
MA, H.1
ZENG, A.P.2
-
41
-
-
0021891874
-
Mechanism and control of transcription initiation in prokaryotes
-
MCCLURE, W.R. (1985). Mechanism and control of transcription initiation in prokaryotes. Ann Rev Biochem 54, 171-204.
-
(1985)
Ann Rev Biochem
, vol.54
, pp. 171-204
-
-
MCCLURE, W.R.1
-
42
-
-
0005128942
-
Products of photosynthesis in natural populations of marine phytoplankton from the Gulf of Maine
-
MORRIS, L., and SKEA, W. (1978). Products of photosynthesis in natural populations of marine phytoplankton from the Gulf of Maine. Marine Biol (Hist Arch) 47, 303-312.
-
(1978)
Marine Biol (Hist Arch)
, vol.47
, pp. 303-312
-
-
MORRIS, L.1
SKEA, W.2
-
43
-
-
21344452782
-
Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response
-
NIKIFOROVA, V.J., DAUB, C.O., HESSE, H., WILLMITZER, L., and HOEFGEN, R. (2005a). Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. J Exp Bot 56, 1887-1896.
-
(2005)
J Exp Bot
, vol.56
, pp. 1887-1896
-
-
NIKIFOROVA, V.J.1
DAUB, C.O.2
HESSE, H.3
WILLMITZER, L.4
HOEFGEN, R.5
-
44
-
-
0037296141
-
Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: Interlacing of biosynthetic pathways provides response speci-ficity
-
NIKIFOROVA, V., FREITAG, J., KEMPA, S., ADAMIK, M., HESSE, H., and HOEFGEN, R. (2003). Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response speci-ficity. Plant J 33, 633-650.
-
(2003)
Plant J
, vol.33
, pp. 633-650
-
-
NIKIFOROVA, V.1
FREITAG, J.2
KEMPA, S.3
ADAMIK, M.4
HESSE, H.5
HOEFGEN, R.6
-
45
-
-
4344651171
-
Towards dissecting nutrient metabolism in plants: A systems biology case study on sulphur metabolism
-
NIKIFOROVA, V.J., AKIERE, B., KEMPA, S., ADAMIK, M., WILLMITZER, L., HESSE, H., et al. (2004). Towards dissecting nutrient metabolism in plants: a systems biology case study on sulphur metabolism. J Exp Bot 55, 1861-1870.
-
(2004)
J Exp Bot
, vol.55
, pp. 1861-1870
-
-
NIKIFOROVA, V.J.1
AKIERE, B.2
KEMPA, S.3
ADAMIK, M.4
WILLMITZER, L.5
HESSE, H.6
-
46
-
-
21344444155
-
Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants
-
NIKIFOROVA, V.J., KOPKA, J., TOLSTIKOV, V., FIEHN, O., HOPKINS, L., HAWKESFORD, M.J., et al. (2005b). Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants. Plant Physiol 138, 304-318.
-
(2005)
Plant Physiol
, vol.138
, pp. 304-318
-
-
NIKIFOROVA, V.J.1
KOPKA, J.2
TOLSTIKOV, V.3
FIEHN, O.4
HOPKINS, L.5
HAWKESFORD, M.J.6
-
47
-
-
29944437875
-
Insights into the acclimation of Chlamydomonas reinhardtii to sulfur deprivation
-
POLLOCK, S.V., POOTAKHAM, W., SHIBAGAKI, N., MOSELEY, J.L., and GROSSMAN, A.R. (2005). Insights into the acclimation of Chlamydomonas reinhardtii to sulfur deprivation. Photosynth Research 86, 475-486.
-
(2005)
Photosynth Research
, vol.86
, pp. 475-486
-
-
POLLOCK, S.V.1
POOTAKHAM, W.2
SHIBAGAKI, N.3
MOSELEY, J.L.4
GROSSMAN, A.R.5
-
48
-
-
0042233986
-
Regulated recruitment and cooperativity in the design of biological regulatory systems. Philos Transact Ser A Math Phys Eng
-
PTASHNE, M. (2003). Regulated recruitment and cooperativity in the design of biological regulatory systems. Philos Transact Ser A Math Phys Eng Sci 361, 1223-1234.
-
(2003)
Sci
, vol.361
, pp. 1223-1234
-
-
PTASHNE, M.1
-
49
-
-
0036898577
-
Microarray data normalization and transformation
-
QUACKENBUSH, J. (2002). Microarray data normalization and transformation. Nat Genet (Suppl) 32, 496-501.
-
(2002)
Nat Genet (Suppl)
, vol.32
, pp. 496-501
-
-
QUACKENBUSH, J.1
-
50
-
-
1842607847
-
-
R DEVELOPMENT CORE TEAM , The R Foundation for Statistical Computing, Vienna
-
R DEVELOPMENT CORE TEAM (2004). R: A language and environment for statistical computing. (The R Foundation for Statistical Computing, Vienna).
-
(2004)
R: A language and environment for statistical computing
-
-
-
52
-
-
0033657261
-
Principal components analysis to summarize microarray experiments: Application to sporulation time series
-
RAYCHAUDHURI, S., STUART, J.M., and ALTMAN, R.B. (2000). Principal components analysis to summarize microarray experiments: application to sporulation time series. Pac Symp Biocomput 455-466.
-
(2000)
Pac Symp Biocomput
, pp. 455-466
-
-
RAYCHAUDHURI, S.1
STUART, J.M.2
ALTMAN, R.B.3
-
53
-
-
0032169580
-
A response regulator of cyanobacteria integrates diverse environmental signals and is critical for survival under extreme conditions
-
SCHWARZ, R., and GROSSMAN, A.R. (1998). A response regulator of cyanobacteria integrates diverse environmental signals and is critical for survival under extreme conditions. Proc Natl Acad Sci USA 95, 11008-11013.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 11008-11013
-
-
SCHWARZ, R.1
GROSSMAN, A.R.2
-
54
-
-
23844543308
-
Acclimation of unicellular cyanobacteria to macronutrient deficiency: Emergence of a complex network of cellular responses
-
SCHWARZ, R., and FORCHHAMMER, K. (2005). Acclimation of unicellular cyanobacteria to macronutrient deficiency: emergence of a complex network of cellular responses. Microbiology 151, 2503-2514.
-
(2005)
Microbiology
, vol.151
, pp. 2503-2514
-
-
SCHWARZ, R.1
FORCHHAMMER, K.2
-
55
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
SHANNON, P., MARKIEL, A., OZIER, O., BALIGA, N.S., WANG, J.T., RAMAGE, D., et al. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13, 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
SHANNON, P.1
MARKIEL, A.2
OZIER, O.3
BALIGA, N.S.4
WANG, J.T.5
RAMAGE, D.6
-
56
-
-
0035910560
-
The Fe/S assembly protein IscU behaves as a substrate for the molecular chaperone Hsc66 from Escherichia coli
-
SILBERG, J.J., HOFF, K.G., TAPLEY, T.L., and VICKERY, L.E. (2001). The Fe/S assembly protein IscU behaves as a substrate for the molecular chaperone Hsc66 from Escherichia coli. J Biol Chem 276, 1696-1700.
-
(2001)
J Biol Chem
, vol.276
, pp. 1696-1700
-
-
SILBERG, J.J.1
HOFF, K.G.2
TAPLEY, T.L.3
VICKERY, L.E.4
-
57
-
-
0042466180
-
Microarray analysis of the genome-wide response to iron deficiency and iron reconstitution in the cyanobacterium Synechocystis sp. PCC 6803
-
SINGH, A.K., MCINTYRE, L.M., and SHERMAN, L.A. (2003). Microarray analysis of the genome-wide response to iron deficiency and iron reconstitution in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol 132, 1825-1839.
-
(2003)
Plant Physiol
, vol.132
, pp. 1825-1839
-
-
SINGH, A.K.1
MCINTYRE, L.M.2
SHERMAN, L.A.3
-
58
-
-
0000042837
-
Evaluating functional network inference using simulations of complex biological systems
-
SMITH, V.A., JARVIS, E.D., and HARTEMINK, A.J. (2002). Evaluating functional network inference using simulations of complex biological systems. Bioinformatics 18, S216-224.
-
(2002)
Bioinformatics
, vol.18
-
-
SMITH, V.A.1
JARVIS, E.D.2
HARTEMINK, A.J.3
-
59
-
-
0041627865
-
Influence of network topology and data collection on network inference
-
SMITH, V.A., JARVIS, E.D., and HARTEMINK, A.J. (2003). Influence of network topology and data collection on network inference. Pac Symp Biocomput 164-175.
-
(2003)
Pac Symp Biocomput
, pp. 164-175
-
-
SMITH, V.A.1
JARVIS, E.D.2
HARTEMINK, A.J.3
-
60
-
-
0003036030
-
Genetic network inference in computational models and application to large-scale gene expression data
-
J. Bower and H. Bolouri, eds, MIT Press, Cambridge, MA, pp
-
SMOYGI, R., FUHRMAN, S., and WEN, X. (2001). Genetic network inference in computational models and application to large-scale gene expression data. In Computational Modeling of Genetic and Biochemical Networks. J. Bower and H. Bolouri, eds. (MIT Press, Cambridge, MA), pp. 119-157.
-
(2001)
Computational Modeling of Genetic and Biochemical Networks
, pp. 119-157
-
-
SMOYGI, R.1
FUHRMAN, S.2
WEN, X.3
-
61
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
STUART, J.M., SEGAL, E., KOLLER, D., and KIM, S.K. (2003). A gene-coexpression network for global discovery of conserved genetic modules. Science 302, 249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
STUART, J.M.1
SEGAL, E.2
KOLLER, D.3
KIM, S.K.4
-
62
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
TSENG, G.C., OH, M.K., ROHLIN, L., LIAO, J.C., and WONG, W.H. (2001). Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res 29, 2549-2557.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2549-2557
-
-
TSENG, G.C.1
OH, M.K.2
ROHLIN, L.3
LIAO, J.C.4
WONG, W.H.5
-
63
-
-
2942542642
-
Consequences of a deletion in dspA on transcript accumulation in Synechocystis sp. strain PCC6803
-
TU, C.J., SHRAGER, J., BURNAP, R.L., POSTIER, B.L., and GROSSMAN, A.R. (2004). Consequences of a deletion in dspA on transcript accumulation in Synechocystis sp. strain PCC6803. J Bacteriol 186, 3889-3902.
-
(2004)
J Bacteriol
, vol.186
, pp. 3889-3902
-
-
TU, C.J.1
SHRAGER, J.2
BURNAP, R.L.3
POSTIER, B.L.4
GROSSMAN, A.R.5
-
64
-
-
33750470072
-
Dimethylsulfoniopropionate uptake by marine phytoplankton
-
VILA-COSTA, M., SIMO, R., HARADA, H., GASOL, J.M., SLEZAK, D., and KIENE, R.P. (2006). Dimethylsulfoniopropionate uptake by marine phytoplankton. Science 314, 652-654.
-
(2006)
Science
, vol.314
, pp. 652-654
-
-
VILA-COSTA, M.1
SIMO, R.2
HARADA, H.3
GASOL, J.M.4
SLEZAK, D.5
KIENE, R.P.6
-
65
-
-
0035070998
-
Quorum sensing as an integral component of gene regulatory networks in Gram-negative bacteria
-
WITHERS, H., SWIFT, S., and WILLIAMS, P. (2001). Quorum sensing as an integral component of gene regulatory networks in Gram-negative bacteria. Curr Opin Microbiol 4, 186-193.
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 186-193
-
-
WITHERS, H.1
SWIFT, S.2
WILLIAMS, P.3
-
66
-
-
0038700482
-
Centers of complex networks
-
WUCHTY, S., and STADLER, P. F. (2003). Centers of complex networks. J Theor Biol 223, 45-53.
-
(2003)
J Theor Biol
, vol.223
, pp. 45-53
-
-
WUCHTY, S.1
STADLER, P.F.2
-
67
-
-
6344221872
-
Insights into the survival of Chlamydomonas reinhardtii during sulfur starvation based on microarray analysis of gene expression
-
ZHANG, Z., SHRAGER, J., JAIN, M., CHANG, C.W., VALLON, O., and GROSSMAN, A.R. (2004). Insights into the survival of Chlamydomonas reinhardtii during sulfur starvation based on microarray analysis of gene expression. Eukaryot Cell 3, 1331-1348.
-
(2004)
Eukaryot Cell
, vol.3
, pp. 1331-1348
-
-
ZHANG, Z.1
SHRAGER, J.2
JAIN, M.3
CHANG, C.W.4
VALLON, O.5
GROSSMAN, A.R.6
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