-
1
-
-
0034659815
-
Proteomics to study genes and genomes
-
Pandey, A. & Mann, M. Proteomics to study genes and genomes. Nature 405, 837-846 (2000).
-
(2000)
Nature
, vol.405
, pp. 837-846
-
-
Pandey, A.1
Mann, M.2
-
2
-
-
33745591083
-
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
-
de Godoy, L. et al. Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biol. 7, R50 (2006).
-
(2006)
Genome Biol
, vol.7
-
-
de Godoy, L.1
-
3
-
-
10744224439
-
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria
-
Mootha, V.K. et al. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell 115, 629-640 (2003).
-
(2003)
Cell
, vol.115
, pp. 629-640
-
-
Mootha, V.K.1
-
4
-
-
11944274520
-
Nucleolar proteome dynamics
-
Andersen, J.S. et al. Nucleolar proteome dynamics. Nature 433, 77-83 (2005).
-
(2005)
Nature
, vol.433
, pp. 77-83
-
-
Andersen, J.S.1
-
5
-
-
33646823604
-
Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome
-
Collins, M.O. et al. Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome. J. Neurochem. 97 (suppl. 1): 16-23 (2006).
-
(2006)
J. Neurochem
, vol.97
, Issue.SUPPL. 1
, pp. 16-23
-
-
Collins, M.O.1
-
6
-
-
22044446815
-
Proteomic analysis of synaptosomes using isotope-coded affinity tags and mass spectrometry
-
Schrimpf, S.P. et al. Proteomic analysis of synaptosomes using isotope-coded affinity tags and mass spectrometry. Proteomics 5 2531-2541 (2005).
-
(2005)
Proteomics
, vol.5
, pp. 2531-2541
-
-
Schrimpf, S.P.1
-
7
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A.C. et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147 (2002).
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
-
8
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y. et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415 180-183 (2002).
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
-
9
-
-
2942692932
-
Analysis of protein phosphorylation by hypothesis-driven multiple-stage mass spectrometry
-
Chang, E.J., Archambault, V., McLachlin, D.T., Krutchinsky, A.N. & Chait, B.T. Analysis of protein phosphorylation by hypothesis-driven multiple-stage mass spectrometry. Anal. Chem. 76, 4472-4483 (2004).
-
(2004)
Anal. Chem
, vol.76
, pp. 4472-4483
-
-
Chang, E.J.1
Archambault, V.2
McLachlin, D.T.3
Krutchinsky, A.N.4
Chait, B.T.5
-
10
-
-
13844299238
-
Analysis of protein phosphorylation by mass spectrometry
-
Garcia, B.A., Shabanowitz, J. & Hunt, D.F. Analysis of protein phosphorylation by mass spectrometry. Methods 35, 256-264 (2005).
-
(2005)
Methods
, vol.35
, pp. 256-264
-
-
Garcia, B.A.1
Shabanowitz, J.2
Hunt, D.F.3
-
11
-
-
2342544898
-
Exploring the phosphoproteome with mass spectrometry
-
Peters, E.C., Brock, A. & Ficarro, S.B. Exploring the phosphoproteome with mass spectrometry. Mini Rev. Med. Chem. 4, 313-324 (2004).
-
(2004)
Mini Rev. Med. Chem
, vol.4
, pp. 313-324
-
-
Peters, E.C.1
Brock, A.2
Ficarro, S.B.3
-
12
-
-
0037338365
-
Proteomic analysis of post-translational modifications
-
Mann, M. & Jensen, O.N. Proteomic analysis of post-translational modifications. Nat. Biotechnol. 21, 255-261 (2003).
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 255-261
-
-
Mann, M.1
Jensen, O.N.2
-
13
-
-
33845441117
-
Dissecting the ubiquitin pathway bymass spectrometry
-
Xu, P. & Peng, J. Dissecting the ubiquitin pathway bymass spectrometry. Biochim. Biophys. Acta 1764, 1940-1947 (2006).
-
(2006)
Biochim. Biophys. Acta
, vol.1764
, pp. 1940-1947
-
-
Xu, P.1
Peng, J.2
-
14
-
-
3142676333
-
Proteomics for protein expression profiling in neuroscience
-
Freeman, W.M. & Hemby, S.E. Proteomics for protein expression profiling in neuroscience. Neurochem. Res. 29, 1065-1081 (2004).
-
(2004)
Neurochem. Res
, vol.29
, pp. 1065-1081
-
-
Freeman, W.M.1
Hemby, S.E.2
-
15
-
-
27744583045
-
-
Lilley, K.S. & Friedman, D.B. All about DIGE: Quantification technology for differential-display 2D-gel proteomics. Expert Rev. Proteomics 1, 401-409 (2004).
-
Lilley, K.S. & Friedman, D.B. All about DIGE: Quantification technology for differential-display 2D-gel proteomics. Expert Rev. Proteomics 1, 401-409 (2004).
-
-
-
-
16
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S.P. et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17 994-999 (1999).
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
-
17
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P.L. et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 3, 1154-1169 (2004).
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
-
18
-
-
0036535357
-
-
Washburn, M.P., Ulaszek, R., Deciu, C., Schieltz, D.M. & Yates, J.R., 3rd. Analysis of quantitative proteomic data generated via multidimensional protein identification technology. Anal. Chem. 74, 1650-1657 (2002).
-
Washburn, M.P., Ulaszek, R., Deciu, C., Schieltz, D.M. & Yates, J.R., 3rd. Analysis of quantitative proteomic data generated via multidimensional protein identification technology. Anal. Chem. 74, 1650-1657 (2002).
-
-
-
-
19
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S.E. et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386 (2002).
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
-
20
-
-
33745464039
-
Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)
-
Dieterich, D.C., Link, A.J., Graumann, J., Tirrell, D.A. & Schuman, E.M. Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT). Proc. Natl. Acad. Sci. USA 103, 9482-9487 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9482-9487
-
-
Dieterich, D.C.1
Link, A.J.2
Graumann, J.3
Tirrell, D.A.4
Schuman, E.M.5
-
22
-
-
0028318014
-
The medicinal chemistry of the azido group
-
Griffin, R.J. The medicinal chemistry of the azido group. Prog. Med. Chem. 31, 121-232 (1994).
-
(1994)
Prog. Med. Chem
, vol.31
, pp. 121-232
-
-
Griffin, R.J.1
-
23
-
-
4344584507
-
A tagging-via-substrate technology for detection and proteomics of farnesylated proteins
-
Kho, Y. et al. A tagging-via-substrate technology for detection and proteomics of farnesylated proteins. Proc. Natl. Acad. Sci. USA 101, 12479-12484 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12479-12484
-
-
Kho, Y.1
-
24
-
-
0037039298
-
Incorporation of azides into recombinant proteins for chemoselective modification by the Staudinger ligation
-
Kiick, K.L., Saxon, E., Tirrell, D.A. & Bertozzi, C.R. Incorporation of azides into recombinant proteins for chemoselective modification by the Staudinger ligation. Proc. Natl. Acad. Sci. USA 99, 19-24 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 19-24
-
-
Kiick, K.L.1
Saxon, E.2
Tirrell, D.A.3
Bertozzi, C.R.4
-
25
-
-
0041692305
-
-
Link, A.J. & Tirrell, D.A. Cell surface labeling of Escherichia coli via copper(I)-catalyzed [3+2] cycloaddition. J. Am. Chem. Soc. 125, 11164-11165 (2003).
-
Link, A.J. & Tirrell, D.A. Cell surface labeling of Escherichia coli via copper(I)-catalyzed [3+2] cycloaddition. J. Am. Chem. Soc. 125, 11164-11165 (2003).
-
-
-
-
26
-
-
4344561883
-
Presentation and detection of azide functionality in bacterial cell surface proteins
-
Link, A.J., Vink, M.K. & Tirrell, D.A. Presentation and detection of azide functionality in bacterial cell surface proteins. J. Am. Chem. Soc. 126, 10598-10602 (2004).
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 10598-10602
-
-
Link, A.J.1
Vink, M.K.2
Tirrell, D.A.3
-
27
-
-
4544310350
-
Expanding the diversity of unnatural cell-surface sialic acids
-
Luchansky, S.J., Goon, S. & Bertozzi, C.R. Expanding the diversity of unnatural cell-surface sialic acids. Chembiochem 5, 371-374 (2004).
-
(2004)
Chembiochem
, vol.5
, pp. 371-374
-
-
Luchansky, S.J.1
Goon, S.2
Bertozzi, C.R.3
-
28
-
-
0042027875
-
Constructing azide-labeled cell surfaces using polysaccharide biosynthetic pathways
-
Luchansky, S.J. et al. Constructing azide-labeled cell surfaces using polysaccharide biosynthetic pathways. Methods Enzymol. 362, 249-272 (2003).
-
(2003)
Methods Enzymol
, vol.362
, pp. 249-272
-
-
Luchansky, S.J.1
-
29
-
-
0030929377
-
Engineering chemical reactivity on cell surfaces through oligosaccharide biosynthesis
-
Mahal, L.K., Yarema, K.J. & Bertozzi, C.R. Engineering chemical reactivity on cell surfaces through oligosaccharide biosynthesis. Science 276, 1125-1128 (1997).
-
(1997)
Science
, vol.276
, pp. 1125-1128
-
-
Mahal, L.K.1
Yarema, K.J.2
Bertozzi, C.R.3
-
30
-
-
0037132659
-
Investigating cellular metabolism of synthetic azidosugars with the Staudinger ligation
-
Saxon, E. et al. Investigating cellular metabolism of synthetic azidosugars with the Staudinger ligation. J. Am. Chem. Soc. 124 14893-14902 (2002).
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 14893-14902
-
-
Saxon, E.1
-
31
-
-
0037099395
-
A stepwise huisgen cycloaddition process: Copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynes
-
Rostovtsev, V.V., Green, L.G., Fokin, V.V. & Sharpless, K.B. A stepwise huisgen cycloaddition process: Copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynes. Angew Chem. Int. Ed. Engl. 41, 2596-2599 (2002).
-
(2002)
Angew Chem. Int. Ed. Engl
, vol.41
, pp. 2596-2599
-
-
Rostovtsev, V.V.1
Green, L.G.2
Fokin, V.V.3
Sharpless, K.B.4
-
32
-
-
0024597207
-
Azidoalanine mutagenicity in Salmonella: Effect of homologation and alpha-methyl substitution
-
Mangold, J.B., Mischke, M.R. & LaVelle, J.M. Azidoalanine mutagenicity in Salmonella: Effect of homologation and alpha-methyl substitution. Mutat. Res. 216, 27-33 (1989).
-
(1989)
Mutat. Res
, vol.216
, pp. 27-33
-
-
Mangold, J.B.1
Mischke, M.R.2
LaVelle, J.M.3
-
33
-
-
0037454346
-
-
Wang, Q. et al. Bioconjugation by copper(I)-catalyzed azide-alkyne [3 + 2] cycloaddition. J. Am. Chem. Soc. 125, 3192-3193 (2003).
-
Wang, Q. et al. Bioconjugation by copper(I)-catalyzed azide-alkyne [3 + 2] cycloaddition. J. Am. Chem. Soc. 125, 3192-3193 (2003).
-
-
-
-
34
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J., McCormack, A.L. & Yates, A.J. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5, 976-989 (1994).
-
(1994)
J. Am. Soc. Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.1
McCormack, A.L.2
Yates, A.J.3
-
35
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., Creasy, D.M. & Cottrell, J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567 (1999).
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
36
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
Craig, R. & Beavis, R.C. TANDEM: Matching proteins with tandem mass spectra. Bioinformatics 20, 1466-1467 (2004).
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
37
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
-
Fenyo, D. & Beavis, R.C. A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal. Chem. 75, 768-774 (2003).
-
(2003)
Anal. Chem
, vol.75
, pp. 768-774
-
-
Fenyo, D.1
Beavis, R.C.2
-
38
-
-
0036393898
-
-
Tabb, D.L., McDonald, W.H. & Yates, J.R., 3rd. DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1, 21-26 (2002).
-
Tabb, D.L., McDonald, W.H. & Yates, J.R., 3rd. DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1, 21-26 (2002).
-
-
-
-
39
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A., Nesvizhskii, A.I., Kolker, E. & Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74, 5383-5392 (2002).
-
(2002)
Anal. Chem
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
40
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A.I., Keller, A., Kolker, E. & Aebersold, R. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75, 4646-4658 (2003).
-
(2003)
Anal. Chem
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
41
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link, A.J. et al. Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17, 676-682 (1999).
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 676-682
-
-
Link, A.J.1
-
42
-
-
0035106351
-
-
Washburn, M.P., Wolters, D. & Yates, J.R., 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247 (2001).
-
Washburn, M.P., Wolters, D. & Yates, J.R., 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247 (2001).
-
-
-
-
43
-
-
34447279509
-
Analysis of complex protein mixtures using multidimensional protein identification technology (MuDPIT)
-
doi:10.1101/pdb.prot4555
-
Schieltz, D.M. & Washburn, M.P. Analysis of complex protein mixtures using multidimensional protein identification technology (MuDPIT). Cold Spring Harbor Protocols 2006 (doi:10.1101/pdb.prot4555).
-
(2006)
Cold Spring Harbor Protocols
-
-
Schieltz, D.M.1
Washburn, M.P.2
|