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Volumn 37, Issue 9, 2005, Pages 991-996

Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

EID: 25144450883     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng1630     Document Type: Article
Times cited : (37)

References (26)
  • 1
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431, 931-945 (2004).
    • (2004) Nature , vol.431 , pp. 931-945
  • 2
    • 12344302543 scopus 로고    scopus 로고
    • A comprehensive transcript index of the human genome generated using microarrays and computational approaches
    • Schadt, E.E. et al. A comprehensive transcript index of the human genome generated using microarrays and computational approaches. Genome Biol. 5, R73 (2004).
    • (2004) Genome Biol. , vol.5
    • Schadt, E.E.1
  • 3
    • 0035072249 scopus 로고    scopus 로고
    • Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
    • Hughes, T.R. et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19, 342-347 (2001).
    • (2001) Nat. Biotechnol. , vol.19 , pp. 342-347
    • Hughes, T.R.1
  • 4
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge, C. & Karlin, S. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268, 78-94 (1997).
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 5
    • 0030623944 scopus 로고    scopus 로고
    • Two methods for improving performance of an HMM and their applicatoin for gene finding
    • Krogh, A. Two methods for improving performance of an HMM and their applicatoin for gene finding. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5, 179-186 (1997).
    • (1997) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.5 , pp. 179-186
    • Krogh, A.1
  • 6
    • 0030624541 scopus 로고    scopus 로고
    • Inferring gene structures in genomic sequences using pattern recognition and expressed sequence tags
    • Xu, Y., Mural, R.J. & Uberbacher, E.C. Inferring gene structures in genomic sequences using pattern recognition and expressed sequence tags. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5, 344-353 (1997).
    • (1997) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.5 , pp. 344-353
    • Xu, Y.1    Mural, R.J.2    Uberbacher, E.C.3
  • 7
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Waterston, R.H. et al. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562 (2002).
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1
  • 8
    • 33947219859 scopus 로고    scopus 로고
    • The functional landscape of moues gene expression
    • Zhang, W. et al. The functional landscape of moues gene expression. J. Biol. 3, 21 (2004).
    • (2004) J. Biol. , vol.3 , pp. 21
    • Zhang, W.1
  • 9
    • 0037250168 scopus 로고    scopus 로고
    • The LJCSC genome browser database
    • Karolchik, D. et al. The LJCSC genome browser database. Nucleic Acids Res. 31, 51-54 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 51-54
    • Karolchik, D.1
  • 10
    • 0035865260 scopus 로고    scopus 로고
    • Experimental annotation of the human genome using microarray technology
    • Shoemaker, D.D. et al. Experimental annotation of the human genome using microarray technology. Nature 409, 922-927 (2001).
    • (2001) Nature , vol.409 , pp. 922-927
    • Shoemaker, D.D.1
  • 11
    • 19944376457 scopus 로고    scopus 로고
    • Global identification of human transcribed sequences with genome tiling arrays
    • Stole, V. et al. Global identification of human transcribed sequences with genome tiling arrays. Science 306, 2242-2246 (2004).
    • (2004) Science , vol.306 , pp. 2242-2246
    • Stole, V.1
  • 12
    • 0242300620 scopus 로고    scopus 로고
    • Empricial analysis of transcriptional activity in the Arabidopsis genome
    • Yamada, K. et al. Empricial analysis of transcriptional activity in the Arabidopsis genome. Science 302, 842-846 (2003).
    • (2003) Science , vol.302 , pp. 842-846
    • Yamada, K.1
  • 13
    • 0037012881 scopus 로고    scopus 로고
    • Large-scale transcriptional activity in Chromosomes 21 and 22
    • Kapranov, P. et al. Large-scale transcriptional activity in Chromosomes 21 and 22. Science 296, 916-919 (2002).
    • (2002) Science , vol.296 , pp. 916-919
    • Kapranov, P.1
  • 14
    • 0037442493 scopus 로고    scopus 로고
    • The transcriptional activity of human Chromosome 22
    • Rinn, J.L. et al. The transcriptional activity of human Chromosome 22. Genes Dev. 17, 529-540 (2003).
    • (2003) Genes Dev. , vol.17 , pp. 529-540
    • Rinn, J.L.1
  • 15
    • 19944376457 scopus 로고    scopus 로고
    • Global identification of human transcribed sequences with genome tiling arrays
    • Bertone, P. et al. Global identification of human transcribed sequences with genome tiling arrays. Science 306, 2242-2246 (2004).
    • (2004) Science , vol.306 , pp. 2242-2246
    • Bertone, P.1
  • 17
    • 0005073263 scopus 로고    scopus 로고
    • Expression and genomic analysis of midasin, a novel and highly conserved AAA protein distantly related to dynein
    • Garbarino, J.E. & Gibbons, I.R. Expression and genomic analysis of midasin, a novel and highly conserved AAA protein distantly related to dynein. BMC Genomics 3, 18 (2002).
    • (2002) BMC Genomics , vol.3 , pp. 18
    • Garbarino, J.E.1    Gibbons, I.R.2
  • 18
    • 0142104045 scopus 로고    scopus 로고
    • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    • Okazaki, Y. et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420, 563-573 (2002).
    • (2002) Nature , vol.420 , pp. 563-573
    • Okazaki, Y.1
  • 19
    • 21044431735 scopus 로고    scopus 로고
    • Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
    • Cheng, J. et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308, 1149-1154 (2005).
    • (2005) Science , vol.308 , pp. 1149-1154
    • Cheng, J.1
  • 20
    • 85016354757 scopus 로고    scopus 로고
    • Mouse transcriptome: Neutral evolution of 'non-coding' complementary DNAs
    • Wang, J. et al. Mouse transcriptome: Neutral evolution of 'non-coding' complementary DNAs (reply). Nature 431, 757 (2004).
    • (2004) Nature , vol.431 , pp. 757
    • Wang, J.1
  • 21
    • 20444368036 scopus 로고    scopus 로고
    • Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
    • Wyers, F. et al. Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 121, 725-737 (2005).
    • (2005) Cell , vol.121 , pp. 725-737
    • Wyers, F.1
  • 22
    • 0035214768 scopus 로고    scopus 로고
    • Most of the human genome is transcribed
    • Wong, G.K., Passey, D.A. & Yu, J. Most of the human genome is transcribed. Genome Res. 11, 1975-1977 (2001).
    • (2001) Genome Res. , vol.11 , pp. 1975-1977
    • Wong, G.K.1    Passey, D.A.2    Yu, J.3
  • 23
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent, W.J. BLAT - The BLAST-like alignment tool. Genome Res. 12, 656-664 (2002).
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 24
    • 0037251892 scopus 로고    scopus 로고
    • NCBI Reference Sequence Project: Update and current status
    • Pruitt, K.D., Tatusova, T. & Maglott, D.R. NCBI Reference Sequence Project: update and current status. Nucleic Acids Res. 31, 34-37 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 34-37
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 26
    • 3042855210 scopus 로고    scopus 로고
    • Unigene: A unified view of the transcriptome
    • National Center for Biotechnology Information, Bethesda, MD
    • Pontius, J.U., Wagner, L. & Schuler, G.D. Unigene: A unified view of the transcriptome. in The NCBI Handbook (National Center for Biotechnology Information, Bethesda, MD, 2003).
    • (2003) The NCBI Handbook
    • Pontius, J.U.1    Wagner, L.2    Schuler, G.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.