Erratum to Courtney Turich, Katherine H. Freeman, Mary Ann Bruns, Maureen Conte, A. Daniel Jones and Stuart G. Wakeham (2007) "Lipids of marine Archaea: Patterns and provenance in the water-column and sediments" Geochimca et Cosmochimca Acta, 71 3272-3291 (DOI:10.1016/j.gca.2007.04.013);Lipids of marine Archaea: Patterns and provenance in the water-column and sediments

Geochimica et Cosmochimica Acta

Volumn 71, Issue 13, 2007, Pages 3272-3291

  Turich, Courtney ^a,d   Freeman, Katherine H ^a   Bruns, Mary Ann ^a   Conte, Maureen ^b   Jones, A Daniel ^c   Wakeham, Stuart G ^d  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b BERMUDA INSTITUTE OF OCEAN SCIENCES   (Bermuda)

^c Michigan State University   (United States)

^d SKIDAWAY INSTITUTE OF OCEANOGRAPHY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMMUNITY DYNAMICS; LIPID; MARINE SEDIMENT; MESOPELAGIC ZONE; MICROORGANISM; PHOTIC ZONE; SUSPENDED PARTICULATE MATTER; WATER COLUMN;

ARCHAEA; CRENARCHAEOTA; EURYARCHAEOTA; MARINE GROUP II;

EID: 34250319818     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2008.01.035     Document Type: Erratum

References (89)

1. Alonso C., and Pernthaler J. Incorporation of glucose under anoxic conditions by bacterioplankton from coastal North Sea surface waters. Appl. Environ. Microbiol. 71 (2005) 1709-1716
2. Alonso C., and Pernthaler J. Concentration-dependent patterns of leucine incorporation by coastal picoplankton. Appl. Environ. Microbiol. 72 (2006) 2141-2147
3. Alvarez-Salgado X.A., and Gilcoto M. Inferring nitrification rates with an inverse method in a coastal upwelling system, Ria de Vigo (NW Spain). Mar. Ecol. Prog. Ser. 276 (2004) 3-17
4. Bano N., Ruffin S., Ransom B., and Hollibaugh J.T. Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with antarctic assemblages. Appl. Environ. Microbiol. 70 (2004) 781-789
5. Beja O., Suzuki M.T., Koonin E.V., Aravind L., Hadd A., Nguyen L.P., Villacorta R., Amjadi M., Garrigues C., Jovanovich S.B., Feldman R.A., and DeLong E.F. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ. Microbiol. 2 (2000) 516-529
6. Biddle J.F., Lipp J.S., Lever M.A., Lloyd K.G., Sorensen K.B., Anderson R., Fredricks H.F., Elvert M., Kelly T.J., Schrag D.P., Sogin M.L., Brenchley J.E., Teske A., House C.H., and Hinrichs K.U. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc. Natl. Acad. Sci. USA 103 (2006) 3846-3851
7. Bidigare R.R., Fluegge A., Freeman K.H., Hanson K.L., Hayes J.M., Hollander D., Jasper J.P., King L.L., Laws E.A., Milder J., Millero F.J., Pancost R., Popp B.N., Steinberg P.A., and Wakeham S.G. Consistent fractionation of C-13 in nature and in the laboratory: growth-rate effects in some haptophyte algae. Globl Biogeochem. Cycle 11 (1997) 279-292
8. Conte M.H., Ralph N., and Ross E.H. Seasonal and interannual variability in deep ocean particle fluxes at the Oceanic Flux Program (OFP)/Bermuda Atlantic Time Series (BATS) site in the western Sargasso Sea near Bermuda. Deep-Sea Res. Part II Top. Studies Oceanogr. 48 (2001) 1471-1505
9. Conte M.H., Weber J.C., King L.L., and Wakeham S.G. The alkenone temperature signal in western North Atlantic surface waters. Geochim. Cosmochim. Acta 65 (2001) 4275-4287
10. DeLong E.F. Archaea in Coastal Marine Environments. Proc. Natl. Acad. Sci. USA 89 (1992) 5685-5689
11. DeLong E.F. Archaeal mysteries of the deep revealed. Proc. Natl. Acad. Sci. USA 103 (2006) 6417-6418
12. DeLong E.F., King L.L., Massana R., Cittone H., Murray A., Schleper C., and Wakeham S.G. Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes. Appl. Environ. Microbiol. 64 (1998) 1133-1138
13. Dumitrescu M., Brassell S.C., Schouten S., Hopmans E., and Sinninghe Damsté J.S. Instability in tropical sea surface temperatures during the Early Aptian. Geology 34 (2006) 833-836
14. Francis C.A., Roberts K.J., Beman J.M., Santoro A.E., and Oakley B.B. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. USA 102 (2005) 14683-14688
15. Fuhrman J.A., McCallum K., and Davis A.A. Novel major Archaebacterial group from marine plankton. Nature 356 (1992) 148-149
16. Gattinger A., Schloter M., and Munch J.C. Phospholipid etherlipid and phospholipid fatty acid fingerprints in selected euryarchaeotal monocultures for taxonomic profiling. FEMS Microbiol. Lett. 213 (2002) 133-139
17. Gibbs S.J., Bralower T.J., Bown P.R., Zachos J.C., and Bybell L.M. Shelf and open-ocean calcareous phytoplankton assemblages across the Paleocene-Eocene Thermal Maximum: implications for global productivity gradients. Geology 34 (2006) 233-236
18. Goñi M.A., Aceves H.L., Thunell R.C., Tappa E., Black D., Astor Y., Varela R., and Muller-Karger F. Biogenic fluxes in the Cariaco Basin: a combined study of sinking particulates and underlying sediments. Deep-Sea Res. Part I Oceanogr. Res. Papers 50 (2003) 781-807
19. Gowing M.M., and Wishner K.F. Feeding ecology of the copepod Lucicutia aff. L. grandis near the lower interface of the Arabian Sea oxygen minimum zone. Deep-Sea Res. Part II Top. Studies Oceanogr. 45 (1998) 2433-2459
20. Grice K., Schouten S., Nissenbaum A., Charrach J., and Sinninghe Damsté J.S. Isotopically heavy carbon in the C (sub 21) to C (sub 25) regular isoprenoids in halite-rich deposits from the Sdom Formation, Dead Sea Basin, Israel. Org. Geochem. 28 (1998) 349-359
21. Hallam S.J., Mincer T., Schleper C., Preston C.M., Roberts K., Richardson P.M., and DeLong D.F. Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol. 4 (2006) e95
22. 86 temperature proxy to the southern North Sea. Org. Geochem. 37 (2006) 1715-1726
23. Herndl G.J., Reinthaler T., Teira E., van Aken H., Veth C., Pernthaler A., and Pernthaler J. Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl. Environ. Microbiol. 71 (2005) 2303-2309
24. Hoefs M., Schouten S., De Leeuw J., King L., Wakeham S., and Sinninghe Damsté J.S. Ether lipids of planktonic Archaea in the marine water column. Appl. Environ. Microbiol. 63 (1997) 3090-3095
25. Hopmans E.C., Schouten S., Pancost R.D., van der Meer M.T.J., and Sinninghe Damsté J.S. Analysis of intact tetraether lipids in archaeal cell material and sediments by high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry. Rapid Commun. Mass Spectrom 14 (2000) 585-589
26. 86 and U37K). Paleoceanography 21, PA300310.1029/2005PA001215.
27. Ingalls A.E., Shah S.R., Hansman R.L., Aluwihare L.I., Santos G.M., Druffel E.R.M., and Pearson A. Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. Proc. Natl. Acad. Sci. USA 103 (2006) 6442-6447
28. Jenkyns H.C., Forster A., Schouten S., and Sinninghe Damsté J.S. High temperatures in the Late Cretaceous Arctic Ocean. Nature 432 (2004) 888-892
29. Johnson T.C., Brown E.T., McManus J., Barry S., Barker P., and Gasse F. A High-Resolution paleoclimate record spanning the past 25,000 years in Southern East Africa. Science 296 (2002) 113-116
30. Karner M.B., DeLong E.F., and Karl D.M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409 (2001) 507-510
31. Konneke M., Bernhard A.E., de la Torre J.R., Walker C.B., Waterbury J.B., and Stahl D.A. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437 (2005) 543-546
32. Langworthy T.A., Smith P.F., and Mayberry W.R. Lipids of thermoplasma acidophilum. J. Bacteriol. 112 (1972) 1193-1200
33. Lee C., Murray D.W., Barber R.T., Buesseler K.O., Dymond J., Hedges J.I., Honjo S., Manganini S.J., Marra J., Moser C., Peterson M.L., Prell W.L., and Wakeham S.G. Particulate organic carbon fluxes: compilation of results from the 1995 US JGOFS Arabian Sea Process Study. Deep-Sea Res. Part II Top. Studies Oceanogr. 45 (1998) 2489-2501
34. Legendre P., and Legendre L. Numerical Ecology (1998), Elsevier, New York
35. Leininger S., Urich T., Schloter M., Schwark L., Qi J., Nicol G.W., Prosser J.I., Schuster S.C., and Schleper C. Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442 (2006) 806-809
36. Lopez-Garcia P., Moreira D., Lopez-Lopez A., and Rodriguez-Valera F. A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions. Environ. Microbiol. 3 (2001) 72-78
37. Macalady J.L., Vestling M.M., Baumler D., Boekelheide N., Kaspar C.W., and Banfield J.F. Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles 8 (2004) 411-419
38. Maechler M. (2005) Cluster: Cluster Analysis. R package version 1.10.2.
39. Maindonald J., and Braun J. Data Analysis and Graphics Using R-An Example-Based Approach (2003), Cambridge University Press, Cambridge
40. Massana R., DeLong E.F., and Pedros-Alio C. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl. Environ. Microbiol. 66 (2000) 1777-1787
41. Massana R., Murray A.E., Preston C.M., and DeLong E.F. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl. Environ. Microbiol. 63 (1997) 50-56
42. Massana R., Taylor L.J., Murray A.E., Wu K.Y., Jeffrey W.H., and DeLong E.F. Vertical distribution and temporal variation of marine planktonic archaea in the Gerlache Strait, Antarctica, during early spring. Limnol. Oceanogr. 43 (1998) 607-617
43. McCune B., and Grace J.B. Analysis of Ecological Communities (2002), MjM Software Design, Gleneden Beach
44. Menzel D., Hopmans E.C., Schouten S., and Sinninghe Damsté J.S. Membrane tetraether lipids of planktonic Crenarchaeota in Pliocene sapropels of the eastern Mediterranean Sea. Paleogeogr. Paleoclimatol. Paleoecol. 239 (2006) 1-15
45. Minchin P.R. An evaluation of the relative robustness of techniques for ecological ordination. Vegetatio 69 (1987) 89-107
46. Moreira D., Rodriguez-Valera F., and Lopez-Garcia P. Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes. Environ. Microbiol. 6 (2004) 959-969
47. Murray A., Preston C.M., Massana R., Taylor L.T., Blakis A., Wu K.Y., and DeLong E.E. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl. Environ. Microbiol. 64 (1998) 2585-2595
48. Murray A.E., Preston C.M., Massana R., Taylor L.T., Blakis A., Wu K., and DeLong E.F. Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl. Environ. Microbiol. 64 (1998) 2585-2595
49. Murray A.E., Wu K.Y., Moyer C.L., Karl D.M., and DeLong E.F. Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean. Aquat. Microbiol. Ecol. 18 (1999) 263-273
50. Oksanen J., Kindt R., and O'Hara R. B. (2005) vegan: Community Ecology Package version 1.6-10. .
51. Ouverney C.C., and Fuhrman J.A. Marine planktonic Archaea take up amino acids. Appl. Environ. Microbiol. 66 (2000) 4829-4833
52. Pancost R.D., Freeman K.H., Wakeham S.G., and Robertson C.Y. Controls on carbon isotope fractionation by diatoms in the Peru upwelling region. Geochim. Cosmochim. Acta 61 (1997) 4983-4991
53. Pancost R.D., and Sinninghe Damsté J.S. Carbon isotopic compositions of prokaryotic lipids as tracers of carbon cycling in diverse settings. Chem. Geol. 195 (2003) 29-58
54. Pearson A., McNichol A.P., Benitez-Nelson B.C., Hayes J.M., and Eglinton T.I. Origins of lipid biomarkers in Santa Monica Basin surface sediment: a case study using compound-specific Delta C-14 analysis. Geochim. Cosmochim. Acta 65 (2001) 3123-3137
55. Powers L.A., Johnson T.C., Werne J.P., Castanada I.S., Hopmans E.C., Sinninghe Damsté J.S., and Schouten S. Large temperature variability in the southern African tropics since the Last Glacial Maximum. Geophys. Res. Lett. (2005) 32
56. Powers L.A., Werne J.P., Johnson T.C., Hopmans E.C., Sinninghe Damsté J.S., and Schouten S. Crenarchaeotal membrane lipids in lake sediments: a new paleotemperature proxy for continental paleoclimate reconstruction?. Geology 32 7 (2004) 613-616
57. Sambrotto R.N. Nitrogen production in the northern Arabian Sea during the Spring Intermonsoon and Southwest Monsoon seasons. Deep-Sea Res. Part II Top. Studies Oceanogr. 48 (2001) 1173-1198
58. Sambrotto R.N., and Mace B.J. Coupling of biological and physical regimes across the Antarctic Polar Front as reflected by nitrogen production and recycling. Deep-Sea Res. Part II Top. Studies Oceanogr. 47 (2000) 3339-3367
59. Sarmiento J., and Gruber N. Ocean Biogeochemical Dynamics (2006), Princeton University Press, Princeton
60. Schleper C., DeLong E.F., Preston C.M., Feldman R.A., Wu K.Y., and Swanson R.V. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosium. J. Bacteriol. 180 (1998) 5003-5009
61. Schleper C., Puehler G., Holz I., Gambacorta A., Janekovic D., Santarius U., Klenk H.P., and Zillig W. Picrophilus Gen-Nov, Fam-Nov-a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around Ph-0. J. Bacteriol. 177 (1995) 7050-7059
62. Scholten J.C.M., Joye S.B., Hollibaugh J.T., and Murrell J.C. Molecular analysis of the sulfate reducing and archaeal community in a meromictic soda lake (Mono Lake, California) by targeting 16S rRNA, mcrA, apsA, and dsrAB genes. Microbiol. Ecol. 50 (2005) 29-39
63. Schouten S., Hopmans E.C., Forster A., van Breugel Y., Kuypers M.M.M., and Sinninghe Damsté J.S. Extremely high sea-surface temperatures at low latitudes during the middle Cretaceous as revealed by archaeal membrane lipids. Geology 31 (2003) 1069-1072
64. Schouten S., Hopmans E.C., Pancost R.D., and Sinninghe Damsté. Widespread occurrence of structurally diverse tetraether membrane lipids: evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles. Proc. Natl. Acad. Sci. USA 97 (2000) 14421-14426
65. Schouten S., Hopmans E.C., Schefuss E., and Sinninghe Damsté J.S. Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures?. Earth Planet. Sci. Lett. 204 (2002) 265-274
66. Schouten S., Hopmans E. C., Schefuss E., and Sinninghe Damsté J. S. (2003b) Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures? (vol. 204, p. 265, 2002). Earth Planet. Sci. Lett. 211, 205-206.
67. 86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry. Anal. Chem. 79 (2007) 2940-2944
68. Schouten S., Wakeham S.G., and Sinninghe Damsté J.S. Evidence for anaerobic methane oxidation by archaea in euxinic waters of the Black Sea. Org. Geochem. 32 (2001) 1277-1281
69. Shimada H., Nemoto N., Shida Y., Oshima T., and Yamagishi A. Complete polar lipid composition of Thermoplasma acidophilum HO-62 determined by high-performance liquid chromatography with evaporative light-scattering detection. J. Bacteriol. 184 (2002) 556-563
70. Sinninghe Damsté J.S., Rijpstra W.I.C., Hopmans E.C., Prahl F.G., Wakeham S.G., and Schouten S. Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian sea. Appl. Environ. Microbiol. 68 (2002) 2997-3002
71. Sinninghe Damsté J.S., and Schouten S. Is there evidence for a substantial contribution of prokaryotic biomass to organic carbon in Phanerozoic carbonaceous sediments?. Org. Geochem. 26 (1997) 517-530
72. Sluijs A., Schouten S., Pagani M., Woltering M., Brinkhuis H., Damsté J.S.S., Dickens G.R., Huber M., Reichart G.J., Stein R., Matthiessen J., Lourens L.J., Pedentchouk N., Backman J., and Moran K. Subtropical arctic ocean temperatures during the Palaeocene/Eocene thermal maximum. Nature 441 (2006) 610-613
73. Smittenberg R.H., Hopmans E.C., Schouten S., Hayes J.M., Eglinton T.I., and Damsté J.S.S. Compound-specific radiocarbon dating of the varved Holocene sedimentary record of Saanich Inlet, Canada. Paleoceanography (2004) 19
74. Swain M., Brisson J.R., Sprott G.D., Cooper F.P., and Patel G.B. Identification of beta-l-gulose as the sugar moiety of the main polar lipid Thermoplasma acidophilum. Biochim. Biophys. Acta Lipids Lipid Metab. 1345 (1997) 56-64
75. Taylor G.T., Hein C., and Iabichella M. Temporal variations in viral distributions in the anoxic Cariaco Basin. Aquat. Microb. Ecol. 30 (2003) 103-116
76. Thunell R.C., Varela R., Llano M., Collister J., Muller-Karger F., and Bohrer R. Organic carbon fluxes, degradation, and accumulation in an anoxic basin: sediment trap results from the Cariaco Basin. Limnol. Oceanogr. 45 (2000) 300-308
77. Wakeham S.G., Hedges J.I., Lee C., Peterson M.L., and Hernes P.J. Compositions and transport of lipid biomarkers through the water column and surficial sediments of the equatorial Pacific Ocean. Deep-Sea Res. Part II-Top. Studies Oceanogr. 44 (1997) 2131-2162
78. Wakeham S.G., Hopmans E.C., Schouten S., and Sinninghe Damsté J.S. Archaeal lipids and anaerobic oxidation of methane in euxinic water columns: a comparative study of the Black Sea and Cariaco Basin. Chem. Geol. 205 (2004) 427-442
79. Wakeham S.G., Lewis C.M., Hopmans E.C., Schouten S., and Sinninghe Damsté J.S. Archaea mediate anaerobic oxidation of methane in deep euxinic waters of the Black Sea. Geochim. Cosmochim. Acta 67 (2003) 1359-1374
80. Wakeham S.G., Peterson M.L., Hedges J.I., and Lee C. Lipid biomarker fluxes in the Arabian Sea, with a comparison to the equatorial Pacific Ocean. Deep-Sea Res. Part II Top. Studies Oceanogr. 49 (2002) 2265-2301
81. Wassmann P., Ypma J.E., and Tselepides A. Vertical flux of faecal pellets and microplankton on the shelf of the oligotrophic Cretan Sea (NE Mediterranean Sea). Prog. Oceanogr. 46 (2000) 241-258
82. Weijers J.W.H., Schouten S., Hopmans E.C., Geenevasen J.A.J., David O.R.P., Coleman J.M., Pancost R.D., and Sinninghe Damsté J.S. Membrane lipids of mesophilic anaerobic bacteria thriving in peats have typical archaeal traits. Environ. Microbiol. 8 (2006) 648-657
83. Wishner K.F., Gowing M.M., and Gelfman C. Mesozooplankton biomass in the upper 1000 m in the Arabian Sea: overall seasonal and geographic patterns, and relationship to oxygen gradients. Deep-Sea Res. Part II Top. Studies Oceanogr. 45 (1998) 2405-2432
84. Wuchter C., Abbas B., Coolen M. J. L., Herfort L., van Bleijswijk J., Timmers P., Strous M., Teira E., Herndl G. J., Middelburg J. J., Schouten S., and Sinninghe Damsté J. S. (2006a) Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci. USA 103, 12317-12322, 10.1073/pnas.0600756103.
85. 86 paleothermometry. Paleoceanography (2006) 21
86. 86 paleothermometry. Paleoceanography (2005) 20
87. 86 paleothermometry. Paleoceanography (2004) 19
88. Wuchter C., Schouten S., Boschker H.T.S., and Sinninghe Damsté J.S. Bicarbonate uptake by marine Crenarchaeota. FEMS Microbiol. Lett. 219 (2003) 203-207
89. 86 and isotope data. Geology 34 (2006) 737-740