Evidence for circumpolar distribution of planktonic Archaea in the Southern Ocean

Aquatic Microbial Ecology

Volumn 18, Issue 3, 1999, Pages 263-273

  Murray, Alison E ^a   Wu, Ke Ying ^a   Moyer, Craig L ^b   Karl, Dave M ^c   DeLong, Edward F ^a,d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b WESTERN WASHINGTON UNIVERSITY   (United States)

^c UNIVERSITY OF HAWAII   (United States)

^d MONTEREY BAY AQUARIUM RESEARCH INSTITUTE   (United States)

Author keywords

Antarctica; Planktonic archaea; SSU rRNA hybridization

Indexed keywords

POPULATION DISTRIBUTION; RIBOSOMAL RNA; RNA PROBE; SEA;

EID: 0344132575     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame018263     Document Type: Article

References (44)

1. Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA (1990a) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925
2. Amann RI, Krumholz L, Stahl DA (1990b) Fluorescentoligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172:762-770
3. Bintrim SB, Donohue TJ, Handelsman J, Roberts GP, Goodman RM (1997) Molecular phylogeny of Archaea from soil. Proc Natl Acad Sci USA 94:277-282
4. Dayton PK (1990) Polar Benthos. In: Smith WO (ed) Polar oceanography Part b: chemistry, biology, geology. Academic Press, San Diego, p 632-685
5. DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci 89:5685-5689
6. DeLong EF, Wu KY, Prezelin BB, Jovine RVM (1994) High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695-697
7. DeLong EF, King LL, Massana R, Cittone H, Murray AE, Schleper C, Wakeham SG (1998) Cyclic and acyclic dibiphytanyl ether lipids in marine psychrophilic crenarchaeotes: evolutionary and ecological implications. Appl Environ Microbiol 64:1133-1138
8. Fry NK, Fredrickson JK, Fishbain S, Wagner M, Stahl DA (1997) Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers. Appl Environ Microbiol 63:1498-1504
9. Fuhrman JA, Azam F (1980) Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California. Appl Environ Microbiol 39: 1085-1095
10. Fuhrman JA, Davis AA (1997) Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences. Mar Ecol Prog Ser 150:275-285
11. Fuhrman JA, McCallum K, Davis AA (1992) Novel major archaebacterial group from marine plankton Nature 356: 148-149
12. Giovannoni SJ, DeLong EF, Olsen GJ, Pace NR (1988) Phylogenetic groupspecific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol 170: 720-726
13. Giovannoni SJ, Britschgi TB, Moyer CL, Field KG (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature 345:60-63
14. Gordon DA, Giovannoni SJ (1996) Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl Environ Microbiol 62:1171-1177
15. Hershberger KL, Barns SM, Reysenbach AL (1996) Wide diversity of Crenarchaeota. Nature 384:420
16. Hodson RE, Azam F, Carlucci AF, Fuhrman JA, Karl DM, Holm-Hansen O (1981) Microbial uptake of dissolved organic matter in McMurdo Sound, Antarctica. Mar Biol 61:89-94
17. Hofmann EE, Klinck JM, Lascara CM, Smith DA (1996) Water mass distribution and circulation west of the Antarctic Peninsula and including Bransfield Strait. In: Foundations for ecological research west of the Antarctic Peninsula. AGU, 70 p 61-80
18. Holm-Hansen O, Hewes CD, Villafane VE, Helbling EW, Silva N, Amos T (1997) Distribution of phytoplankton and nutrients in relation to different water masses in the area around Elephant Island, Antarctica. Polar Biol 18: 145-153
19. Huntley ME, Niiler PP (1995) Physical control of population dynamics in the Southern Ocean. ICES J Mar Sci 52: 457-468
20. Libes S (1992) An introduction to marine biogeochemistry. Wiley, New York
21. Lin C, Raskin L, Stahl DA (1997) Microbial community structure in gastrointestinal tracts of domestic animals: comparative analyses using rRNA targeted oligonucleotide probes. FEMS Microbiol Ecol 22:281-294
22. MacGregor BJ, Moser DP, Alm EW, Nealson KH, Stahl DA (1997) Crenarchaeota in Lake Michigan sediment. Appl Environ Microbiol 63:1178-1181
23. Massana R, Murray AE, Preston CM, DeLong EF (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microbiol 63:50-56
24. Massana R, Taylor LT, Murray AE, Wu KY, Jeffrey WH, DeLong EF (1998) Distribution of marine planktonic archaea in the Gerlache strait, Antarctic Peninsula, during early spring. Limnol Oceanogr (in press)
25. McInerey JO, Wilkinson M, Patching JW, Embley TM, Powell R (1995) Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deepsea deposit feeder. Appl Environ Microbiol 61:1646-1648
26. Moyer CL, Tiedje JM, Dobbs FC, Karl DM (1999) Diversity of deepsea hydrothermal vent Archaea from Loihi Seamount, Hawaii. Deep-Sea Res (in press)
27. Munson MA, Nedwell DB, Embley TM (1997) Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh. Appl Environ Microbiol 63:4729-4733
28. Murray AE, Preston CM, Massana R, Taylor LT, Blakis A, Wu K, DeLong EF (1998) Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters off Anvers Island, Antarctica. Appl Environ Microbiol 64: 2585-2595
29. Pace NR, Stahl DA, Lane DJ, Olsen GJ (1986) The analysis of natural microbial populations by ribosomal RNA sequences. Adv Microb Ecol 9:1-55
30. Parsons TR, Maita Y, Lalli CM (1984) A manual of chemical and biological methods for seawater analysis. Pergamon Press, New York
31. Paul JH, Myers B (1982) Fluorometeric determination of DNA in aquatic microorganisms by use of Hoechst 33258. Appl Environ Microbiol 43:1393-1399
32. Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25: 943-948
33. Preston CM, Wu KY, Molinski TF, DeLong EF (1996) A psychrophilic crenarchaeon inhabits a marine sponge: cenarchaeum symbiosum gen. nov., sp. nov. Proc Natl Acad Sci 93:6241-6246
34. Raskin L, Stomley JM, Rittman BE, Stahl DA (1994) Groupspecific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol 60: 1232-1240
35. Schleper C, Holben W, Klenk HP (1997) Recovery of Crenarchaeotal ribosomal DNA sequences from freshwater lake sediments. Appl Environ Microbiol 63:321-323
36. Sievers HA, Nowlin WD Jr (1984) The stratification and water masses at Drake Passage. J Geophys Res 89:10489-10514
37. Stahl DA, Flesher B, Mansfield HR, Montgomery L (1988) Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl Environ Microbiol 54: 1079-1084
38. Stein M, Heywood RB (1994) Antarctic environment physical oceanography: the Antarctic peninsula and Southwest Atlantic region of the Southern Ocean. In: ElSayed SZ (ed) Southern ocean ecology. University Press, Cambridge, p 11-24
39. Ueda T, Suga Y, Matsuguchi T (1995) Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur J Soil Sci 46:415-421
40. Vincent WF (1988) Microbial ecosystems of Antarctica. University Press, Cambridge
41. Ward BB (1984) Combined autoradiography and immunofluorescence for estimation of single cell activity of ammoniumoxidizing bacteria. Limnol Oceanogr 29:402-410
42. Whitworth T (1980) Zonation and geostrophic flow of the Antarctic Circumpolar Current at Drake Passage. Deep-Sea Res 27A:497-507
43. Woese CR, Kandier O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci 87: 4576-4579
44. Zheng D, Alm EW, Stahl DA, Raskin L (1996) Characterization of universal smallsubunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl Environ Microbiol 62:4504-4513