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Volumn 396, Issue 1, 2007, Pages 13-27

Complete mitochondrial genome of the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae): Genome description and phylogenetic considerations inferred from the Cyt b and 16S rRNA genes

Author keywords

Long polymerase chain reaction; Phylogeny; Sequence divergence

Indexed keywords

CYTOCHROME B; RNA 16S;

EID: 34249334313     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.01.027     Document Type: Article
Times cited : (109)

References (55)
  • 1
    • 0019423856 scopus 로고
    • Sequence and organization of human mitochondrial genome
    • Anderson S., et al. Sequence and organization of human mitochondrial genome. Nature 290 (1981) 457-465
    • (1981) Nature , vol.290 , pp. 457-465
    • Anderson, S.1
  • 4
    • 0000661695 scopus 로고
    • Modes of animal speciation
    • Bush G.L. Modes of animal speciation. Ann. Rev. Ecolog. Syst. 6 (1975) 339-364
    • (1975) Ann. Rev. Ecolog. Syst. , vol.6 , pp. 339-364
    • Bush, G.L.1
  • 5
    • 34249288153 scopus 로고    scopus 로고
    • Dobzhansky, Th., 1955. Evolution, Genetics and Man. John Wiley & Sons, Inc. - N.Y., Chapman & Hall, Limited - London, 398 P.
  • 6
    • 0003991673 scopus 로고    scopus 로고
    • Sinauer Associates Inc., Sanderland, Massachusetts 664 pp.
    • Felsenstein J. Inferring Phylogenies (2004), Sinauer Associates Inc., Sanderland, Massachusetts 664 pp.
    • (2004) Inferring Phylogenies
    • Felsenstein, J.1
  • 7
    • 34249326060 scopus 로고    scopus 로고
    • FishBase 2005. http://www.fishbase.org/home.htm.
  • 8
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23S-like) ribosomal RNA structures
    • Gutell R.R., Gray M.W., and Schnare M.N. A compilation of large subunit (23S and 23S-like) ribosomal RNA structures. Nucleic Acids Res. 21 (1993) 3055-3074
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 9
    • 0842266315 scopus 로고    scopus 로고
    • The phylogenetic relationships among Noturus catfishes (Siluriformes: Ictaluridae) as inferred from mitochondrial gene cytochrome b and nuclear recombination activating gene 2
    • Hardman M. The phylogenetic relationships among Noturus catfishes (Siluriformes: Ictaluridae) as inferred from mitochondrial gene cytochrome b and nuclear recombination activating gene 2. Mol. Phylogenet. Evol. 30 (2004) 395-408
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 395-408
    • Hardman, M.1
  • 10
    • 0002821517 scopus 로고    scopus 로고
    • Linking evolutionary pattern and process: the relevance of species concepts for the study of speciation
    • Howard D.J., and Berlocher S.H. (Eds), Oxford Univ. Press, Oxford - N.Y.
    • Harrison R.G. Linking evolutionary pattern and process: the relevance of species concepts for the study of speciation. In: Howard D.J., and Berlocher S.H. (Eds). Endless Forms: Species and Speciation (1998), Oxford Univ. Press, Oxford - N.Y. 19-31
    • (1998) Endless Forms: Species and Speciation , pp. 19-31
    • Harrison, R.G.1
  • 12
    • 0032023889 scopus 로고    scopus 로고
    • Taxonomic sampling, phylogenetic accuracy, and investigator bias
    • Hillis D.M. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst. Biol. 47 (1998) 3-8
    • (1998) Syst. Biol. , vol.47 , pp. 3-8
    • Hillis, D.M.1
  • 13
    • 0034849408 scopus 로고    scopus 로고
    • Mr.BAYES: bayesian inference of phylogeny
    • Hulsenbeck J.P., and Rondquist F. Mr.BAYES: bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Hulsenbeck, J.P.1    Rondquist, F.2
  • 14
    • 0000675190 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese sardine, Sardinops melanosticus
    • Inoue J.G., Miya M., Tsukamoto K., and Nishida M. Complete mitochondrial DNA sequence of the Japanese sardine, Sardinops melanosticus. Fish. Sci. 66 (2000) 924-932
    • (2000) Fish. Sci. , vol.66 , pp. 924-932
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 16
    • 0000307861 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of Japanese anchovy, Engraulis japonicus
    • Inoue J.G., Miya M., Tsukamoto K., and Nishida M. Complete mitochondrial DNA sequence of Japanese anchovy, Engraulis japonicus. Fish. Sci. 67 (2001) 828-835
    • (2001) Fish. Sci. , vol.67 , pp. 828-835
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 17
    • 0031761786 scopus 로고    scopus 로고
    • A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene
    • Johns G.C., and Avise J.C. A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol. Biol. Evol. 15 (1998) 1481-1490
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1481-1490
    • Johns, G.C.1    Avise, J.C.2
  • 18
    • 33845604610 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the Mekong giant catfish (Pangasianodon gigas), and the phylogenetic relationships among Siluriformes
    • Jondeung A., Sangthong P., and Zardoya R. The complete mitochondrial DNA sequence of the Mekong giant catfish (Pangasianodon gigas), and the phylogenetic relationships among Siluriformes. Gene 387 (2007) 49-57
    • (2007) Gene , vol.387 , pp. 49-57
    • Jondeung, A.1    Sangthong, P.2    Zardoya, R.3
  • 19
    • 33847205376 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the Korean soft-shelled turtle Pelodiscus sinensis (Testudines, Trionychidae)
    • Jung S.-O., Lee Y.-M., Kartavtsev Y., Park I.-S., Kim D.S., and Lee J.-S. The complete mitochondrial genome of the Korean soft-shelled turtle Pelodiscus sinensis (Testudines, Trionychidae). DNA Seq. 17 (2006) 471-483
    • (2006) DNA Seq. , vol.17 , pp. 471-483
    • Jung, S.-O.1    Lee, Y.-M.2    Kartavtsev, Y.3    Park, I.-S.4    Kim, D.S.5    Lee, J.-S.6
  • 21
    • 33646483044 scopus 로고    scopus 로고
    • Analysis of nucleotide diversity at genes Cyt-b and Co-1 on population, species, and genera levels. Applicability of DNA and allozyme data in genetics of speciation
    • Kartavtsev Y.P., and Lee J.-S. Analysis of nucleotide diversity at genes Cyt-b and Co-1 on population, species, and genera levels. Applicability of DNA and allozyme data in genetics of speciation. Russ. J. Genet. 42 (2006) 341-362
    • (2006) Russ. J. Genet. , vol.42 , pp. 341-362
    • Kartavtsev, Y.P.1    Lee, J.-S.2
  • 22
    • 3042765287 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the rockfish, Sebastes schlegeli (Scorpaeniformes, Scorpaenidae)
    • Kim I.-C., and Lee J.-S. The complete mitochondrial genome of the rockfish, Sebastes schlegeli (Scorpaeniformes, Scorpaenidae). Mol. Cells 17 (2004) 322-328
    • (2004) Mol. Cells , vol.17 , pp. 322-328
    • Kim, I.-C.1    Lee, J.-S.2
  • 23
    • 3042749225 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the javeline goby Acanthogobius hasta (Perciformes, Gobiidae) and phylogenetic considerations
    • Kim I.-C., et al. The complete mitochondrial genome of the javeline goby Acanthogobius hasta (Perciformes, Gobiidae) and phylogenetic considerations. Gene 336 (2004) 147-153
    • (2004) Gene , vol.336 , pp. 147-153
    • Kim, I.-C.1
  • 24
    • 3042809186 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the floating gobby, Gymnogobius petschiliensis (Perciformes, Gobiidae)
    • Kim Y.-J., Kweon H.-S., Kim I.-C., Lee Y.-M., Kim J.-M., and Lee J.-S. The complete mitochondrial genome of the floating gobby, Gymnogobius petschiliensis (Perciformes, Gobiidae). Mol. Cells 17 (2004) 446-453
    • (2004) Mol. Cells , vol.17 , pp. 446-453
    • Kim, Y.-J.1    Kweon, H.-S.2    Kim, I.-C.3    Lee, Y.-M.4    Kim, J.-M.5    Lee, J.-S.6
  • 25
    • 27844575878 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the ray fish Raja porosa (Chondrichthyes, Rajidae)
    • Kim I.-C., Jung S.-O., Lee Y.-M., Lee C.J., Park J.-K., and Lee J.-S. The complete mitochondrial genome of the ray fish Raja porosa (Chondrichthyes, Rajidae). DNA Seq. 16 (2005) 187-194
    • (2005) DNA Seq. , vol.16 , pp. 187-194
    • Kim, I.-C.1    Jung, S.-O.2    Lee, Y.-M.3    Lee, C.J.4    Park, J.-K.5    Lee, J.-S.6
  • 29
    • 0031696736 scopus 로고    scopus 로고
    • The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions
    • Kumazawa Y., Ota H., Nishida M., and Ozawa T. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics 150 (1998) 313-329
    • (1998) Genetics , vol.150 , pp. 313-329
    • Kumazawa, Y.1    Ota, H.2    Nishida, M.3    Ozawa, T.4
  • 30
    • 0034046745 scopus 로고    scopus 로고
    • The internally self-fertilized hermaphroditic teleost Rivulus marmoratus (Cyprinodontiformes, Rivulidae) β-actin gene: amplification and sequence analysis with conserved primers
    • Lee J.-S. The internally self-fertilized hermaphroditic teleost Rivulus marmoratus (Cyprinodontiformes, Rivulidae) β-actin gene: amplification and sequence analysis with conserved primers. Mar. Biotechnol. 2 (2000) 161-166
    • (2000) Mar. Biotechnol. , vol.2 , pp. 161-166
    • Lee, J.-S.1
  • 31
    • 0035660350 scopus 로고    scopus 로고
    • The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the first description of duplication of control region in fish
    • Lee J.-S., et al. The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the first description of duplication of control region in fish. Gene 280 (2001) 1-7
    • (2001) Gene , vol.280 , pp. 1-7
    • Lee, J.-S.1
  • 32
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA
    • Li W.H. Molecular Evolution (1997), Sinauer Associates, Sunderland, MA
    • (1997) Molecular Evolution
    • Li, W.H.1
  • 33
    • 1542351350 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Atlantic bluefin tuna Thunnus thyninus
    • Manchado M., Gatanase G., and Infance C. Complete mitochondrial DNA sequence of the Atlantic bluefin tuna Thunnus thyninus. Fish. Sci. 70 (2004) 68-73
    • (2004) Fish. Sci. , vol.70 , pp. 68-73
    • Manchado, M.1    Gatanase, G.2    Infance, C.3
  • 34
    • 0001876935 scopus 로고
    • Process of speciation in animals
    • Barigozzim C. (Ed), Alan R. Liss, N.Y.
    • Mayr E. Process of speciation in animals. In: Barigozzim C. (Ed). Mechanisms of Speciation (1982), Alan R. Liss, N.Y. 1-20
    • (1982) Mechanisms of Speciation , pp. 1-20
    • Mayr, E.1
  • 35
    • 0033191527 scopus 로고    scopus 로고
    • Organization of mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangement in bony fishes
    • Miya M., and Nishida M. Organization of mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangement in bony fishes. Mar. Biotechnol. 1 (1999) 416-426
    • (1999) Mar. Biotechnol. , vol.1 , pp. 416-426
    • Miya, M.1    Nishida, M.2
  • 36
    • 0034749003 scopus 로고    scopus 로고
    • Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences
    • Miya M., Kawaguchi A., and Nishida M. Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol. Biol. Evol. 18 (2001) 1993-2009
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1993-2009
    • Miya, M.1    Kawaguchi, A.2    Nishida, M.3
  • 37
    • 1942440859 scopus 로고    scopus 로고
    • Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data
    • Moyer G.R., Burr B.M., and Krajewski C. Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data. Zool. J. Linn. Soc. 140 4 (2004) 551-575
    • (2004) Zool. J. Linn. Soc. , vol.140 , Issue.4 , pp. 551-575
    • Moyer, G.R.1    Burr, B.M.2    Krajewski, C.3
  • 38
    • 24944557120 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese flying fish Cypselurus hiraii
    • Nagase M., Aimi T., Suginaka K., Kitamoto Y., and Morinaga T. Complete mitochondrial DNA sequence of the Japanese flying fish Cypselurus hiraii. Fish. Sci. 71 (2005) 914-923
    • (2005) Fish. Sci. , vol.71 , pp. 914-923
    • Nagase, M.1    Aimi, T.2    Suginaka, K.3    Kitamoto, Y.4    Morinaga, T.5
  • 39
    • 0028985207 scopus 로고    scopus 로고
    • Hydrophobicity and phylogeny
    • Nailor G.J., Collins T.M., and Brown W.M. Hydrophobicity and phylogeny. Nature 373 (1996) 565-566
    • (1996) Nature , vol.373 , pp. 565-566
    • Nailor, G.J.1    Collins, T.M.2    Brown, W.M.3
  • 42
    • 10944225682 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two epigonichthys species
    • Nohara M., Nishida M., Miya M., and Nishikawa T. Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two epigonichthys species. J. Mol. Evol. 60 (2005) 526-537
    • (2005) J. Mol. Evol. , vol.60 , pp. 526-537
    • Nohara, M.1    Nishida, M.2    Miya, M.3    Nishikawa, T.4
  • 43
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: an application to display of phylogenetic trees on personal computers
    • Page R.D.M. TREEVIEW: an application to display of phylogenetic trees on personal computers. Comput. Appl. Biosci. 12 (1996) 357-358
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 44
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model DNA substitution
    • Posada D., and Grandal K.A. MODELTEST: testing the model DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Grandal, K.A.2
  • 45
    • 0041386108 scopus 로고    scopus 로고
    • Mr.BAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. Mr.BAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 46
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 1406-1425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 1406-1425
    • Saitou, N.1    Nei, M.2
  • 47
    • 0037380299 scopus 로고    scopus 로고
    • Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography
    • Saitoh K., Miya M., Inoue J.G., Ishiguro N.B., and Nishida M. Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. J. Mol. Evol. 56 4 (2003) 464-472
    • (2003) J. Mol. Evol. , vol.56 , Issue.4 , pp. 464-472
    • Saitoh, K.1    Miya, M.2    Inoue, J.G.3    Ishiguro, N.B.4    Nishida, M.5
  • 48
    • 0028348061 scopus 로고
    • Evolution of the WANCY region in Amniote mitochondrial DNA
    • Seutin G., Lang B.F., Mindel D.P., and Morais R. Evolution of the WANCY region in Amniote mitochondrial DNA. Mol. Evol. Biol. 11 (1994) 329-340
    • (1994) Mol. Evol. Biol. , vol.11 , pp. 329-340
    • Seutin, G.1    Lang, B.F.2    Mindel, D.P.3    Morais, R.4
  • 49
    • 34249318271 scopus 로고    scopus 로고
    • Statistica 5.5., 1999. StatSoft, Inc. (1999). STATISTICA for Windows [Computer program manual]. Tulsa, OK: StatSoft, Inc., 2300 East 14th Street, Tulsa, OK 74104, phone: (918) 749-1119, fax: (918) 749-2217, email: info@statsoft.com, WEB: http://www.statsoft.com. Swofford, D.L., 2002. PAUP: Phylogenetic analysis using parsimony, version 4.10. Sinauer Associates, Sunderland, MA.
  • 50
    • 0002883117 scopus 로고
    • Mechanisms of speciation - population genetic approach
    • Templeton A.R. Mechanisms of speciation - population genetic approach. Ann. Rev. Ecolog. Syst. 12 (1981) 23-48
    • (1981) Ann. Rev. Ecolog. Syst. , vol.12 , pp. 23-48
    • Templeton, A.R.1
  • 51
    • 0027968068 scopus 로고
    • ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position, specific gap penalties, and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position, specific gap penalties, and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 52
    • 0026670894 scopus 로고
    • The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variation among vertebrates
    • Tzeng C.S., Hui C.F., Shen S.C., and Huang P.C. The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variation among vertebrates. Nucleic Acids Res. 20 (1992) 4853-4858
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4853-4858
    • Tzeng, C.S.1    Hui, C.F.2    Shen, S.C.3    Huang, P.C.4
  • 53
    • 0042672569 scopus 로고    scopus 로고
    • Complete sequence and characterization of the channel catfish mitochondrial genome
    • Waldbieser G.C., Bilodeau A.L., and Nonneman D.J. Complete sequence and characterization of the channel catfish mitochondrial genome. DNA Seq. 14 4 (2003) 265-277
    • (2003) DNA Seq. , vol.14 , Issue.4 , pp. 265-277
    • Waldbieser, G.C.1    Bilodeau, A.L.2    Nonneman, D.J.3
  • 54
    • 0026624980 scopus 로고
    • Diseases of the mitochondrial-DNA
    • Wallace D.C. Diseases of the mitochondrial-DNA. Ann. Rev. Biochem. 61 (1992) 1175-1212
    • (1992) Ann. Rev. Biochem. , vol.61 , pp. 1175-1212
    • Wallace, D.C.1
  • 55
    • 2442596112 scopus 로고    scopus 로고
    • Convergence among cave catfishes: long-branch attraction and a Bayesian relative rates test
    • Wilcox T.P., Garcia de Leon F.J., Hendrickson D.A., and Hillis D.M. Convergence among cave catfishes: long-branch attraction and a Bayesian relative rates test. Mol. Phylogenet. Evol. 31 (2004) 1101-1113
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 1101-1113
    • Wilcox, T.P.1    Garcia de Leon, F.J.2    Hendrickson, D.A.3    Hillis, D.M.4


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