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Volumn 1, Issue 5, 1999, Pages 416-426

Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): First example of transfer RNA gene rearrangements in bony fishes

Author keywords

Gene organization; Long PCR; Mitochondrial DNA; Rearrangement; Transfer RNA

Indexed keywords

CYTOCHROME B; GENE DELETION; GENE DUPLICATION; GENE REARRANGEMENT; GENE SEQUENCING; GENOME ANALYSIS; MITOCHONDRIAL DNA; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIMER DNA; RIBOSOMAL RNA; TRANSFER RNA;

EID: 0033191527     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00011798     Document Type: Article
Times cited : (300)

References (35)
  • 2
    • 0019983804 scopus 로고
    • Complete sequence of bovine mitochondrial DNA: Conserved features of the mammalian mitochondrial genome
    • Anderson, S., de Bruijn, M.H.L., Coulson, A.R., Eperon, I.C., Sanger, F., and Young, I.G. (1982). Complete sequence of bovine mitochondrial DNA: conserved features of the mammalian mitochondrial genome. J Mol Biol 156:683-717.
    • (1982) J Mol Biol , vol.156 , pp. 683-717
    • Anderson, S.1    De Bruijn, M.H.L.2    Coulson, A.R.3    Eperon, I.C.4    Sanger, F.5    Young, I.G.6
  • 3
    • 0028211009 scopus 로고
    • PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates
    • Barnes, W.M. (1994). PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates. Proc Natl Acad Sci USA 91:2216-2220.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2216-2220
    • Barnes, W.M.1
  • 5
    • 0028082089 scopus 로고
    • The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome
    • Chang, Y.-S., Huang, F.-I., and Lo, T.-B. (1994) The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome. J Mol Evol 38:138-155.
    • (1994) J Mol Evol , vol.38 , pp. 138-155
    • Chang, Y.-S.1    Huang, F.-I.2    Lo, T.-B.3
  • 7
    • 0028334711 scopus 로고
    • Complete mitochondrial genome amplification
    • Cheng, S., Higuchi, R., and Stoneking, M. (1994b). Complete mitochondrial genome amplification. Nature Genets 7:350-351.
    • (1994) Nature Genets , vol.7 , pp. 350-351
    • Cheng, S.1    Higuchi, R.2    Stoneking, M.3
  • 8
    • 0025343497 scopus 로고
    • Sequence and gene organization of the chicken mitochondrial genome
    • Desjardins, P., and Morais, R. (1990). Sequence and gene organization of the chicken mitochondrial genome. J Mol Biol 212:599-634.
    • (1990) J Mol Biol , vol.212 , pp. 599-634
    • Desjardins, P.1    Morais, R.2
  • 9
    • 0025884174 scopus 로고
    • Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome
    • Desjardins, P., and Morais, R. (1991). Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome. J Mol Evol 32:153-161.
    • (1991) J Mol Evol , vol.32 , pp. 153-161
    • Desjardins, P.1    Morais, R.2
  • 10
    • 0012353175 scopus 로고
    • Elongation of displacement loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences
    • Doda, J.N., Wright, C.T., and Clayton, D.A. (1981). Elongation of displacement loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc Natl Acad Sci USA 78:6116-6120.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 6116-6120
    • Doda, J.N.1    Wright, C.T.2    Clayton, D.A.3
  • 11
    • 0002961018 scopus 로고    scopus 로고
    • Nucleic acids, III: Analysis of fragments and restriction sites
    • Hillis, D.M., Moritz, C., and Mable, B.K. (eds.). Sunderland, Mass.: Sinauer Associates
    • Dowling, T.E., Moritz, C., Palmer, J.D., and Rieseberg, L.H. (1996). Nucleic acids, III: analysis of fragments and restriction sites. In: Molecular Systematics, 2nd ed., Hillis, D.M., Moritz, C., and Mable, B.K. (eds.). Sunderland, Mass.: Sinauer Associates, 249-320.
    • (1996) Molecular Systematics, 2nd Ed. , pp. 249-320
    • Dowling, T.E.1    Moritz, C.2    Palmer, J.D.3    Rieseberg, L.H.4
  • 12
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23s-like) ribosomal RNA structures: 1993
    • Gutell, R.R., Gray, M.W., and Schnare, M.N. (1993). A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993. Nucleic Acids Res 21:3055-3074.
    • (1993) Nucleic Acids Res , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 13
    • 0028270434 scopus 로고
    • The marsupial mitochondrial genome and the evolution of placental mammals
    • Janke, A., Feldmaier-Fuchs, G., Thomas, W.K., von Haeseler, A., and Pääbo, S. (1994). The marsupial mitochondrial genome and the evolution of placental mammals. Genetics 137:243-256.
    • (1994) Genetics , vol.137 , pp. 243-256
    • Janke, A.1    Feldmaier-Fuchs, G.2    Thomas, W.K.3    Von Haeseler, A.4    Pääbo, S.5
  • 14
    • 0030236768 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of Atlantic cod (Gadus morhua): Relevance to taxonomic studies among codfishes
    • Johansen, S., and Bakke, I. (1996). The complete mitochondrial DNA sequence of Atlantic cod (Gadus morhua): relevance to taxonomic studies among codfishes. Mol Mar Biol Biotechnol 5:203-214.
    • (1996) Mol Mar Biol Biotechnol , vol.5 , pp. 203-214
    • Johansen, S.1    Bakke, I.2
  • 15
    • 0002878861 scopus 로고
    • Biology of Gonostoma gracile Günther (Gonostomatidae), II: Geographical and vertical distribution
    • Kawaguchi, K. (1973). Biology of Gonostoma gracile Günther (Gonostomatidae), II: geographical and vertical distribution. J Oceanogr Soc Jpn 29:113-120.
    • (1973) J Oceanogr Soc Jpn , vol.29 , pp. 113-120
    • Kawaguchi, K.1
  • 16
    • 0027482104 scopus 로고
    • Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics
    • Kumazawa, Y., and Nishida, M. (1993). Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J Mol Evol 37:380-398.
    • (1993) J Mol Evol , vol.37 , pp. 380-398
    • Kumazawa, Y.1    Nishida, M.2
  • 17
    • 0029096503 scopus 로고
    • Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers
    • Kumazawa, Y., and Nishida, M. (1995). Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers. Mol Biol Evol 12:759-772.
    • (1995) Mol Biol Evol , vol.12 , pp. 759-772
    • Kumazawa, Y.1    Nishida, M.2
  • 18
    • 0028834126 scopus 로고
    • Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: Early establishment of the vertebrate genome organization
    • Lee, W.-J., and Kocher, T.D. (1995). Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. Genetics 139: 873-887.
    • (1995) Genetics , vol.139 , pp. 873-887
    • Lee, W.-J.1    Kocher, T.D.2
  • 19
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson, G., and Gutman, G.A. (1987). Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221.
    • (1987) Mol Biol Evol , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 20
    • 0031012089 scopus 로고    scopus 로고
    • Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
    • Macey, J.R., Larson, A., Ananjeva, N.B., Fang, Z., and Papenfuss, T.J. (1997). Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Mol Biol Evol 14:91-104.
    • (1997) Mol Biol Evol , vol.14 , pp. 91-104
    • Macey, J.R.1    Larson, A.2    Ananjeva, N.B.3    Fang, Z.4    Papenfuss, T.J.5
  • 21
    • 0030595528 scopus 로고    scopus 로고
    • Molecular phylogenetic perspective on the evolution of the deep-sea fish genus Cyclothone (Stomiiformes: Gonostomatidae)
    • Miya, M., and Nishida, M. (1996). Molecular phylogenetic perspective on the evolution of the deep-sea fish genus Cyclothone (Stomiiformes: Gonostomatidae). Ichthyol Res 43:375-398.
    • (1996) Ichthyol Res , vol.43 , pp. 375-398
    • Miya, M.1    Nishida, M.2
  • 22
    • 0032133362 scopus 로고    scopus 로고
    • Molecular phytogeny and evolution of the deep-sea fish genus
    • Miya, M., and Nishida, M. (1998). Molecular phytogeny and evolution of the deep-sea fish genus. Sternoptyx. Mol Phylogenet Evol 10:11-22.
    • (1998) Sternoptyx. Mol Phylogenet Evol , vol.10 , pp. 11-22
    • Miya, M.1    Nishida, M.2
  • 23
    • 0023433511 scopus 로고
    • Tandem duplications in animal mitochondrial DNAs: Variation in incidence and gene content among lizards
    • Moritz C., and Brown, W.M. (1987). Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards. Proc Natl Acad Sci USA 84:7183-7187.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 7183-7187
    • Moritz, C.1    Brown, W.M.2
  • 24
    • 0028985207 scopus 로고    scopus 로고
    • Hydrophobicity and phylogeny
    • Naylor, G.J., Collins, T.M., and Brown, W.M. (1996). Hydrophobicity and phylogeny. Nature 373:555-556.
    • (1996) Nature , vol.373 , pp. 555-556
    • Naylor, G.J.1    Collins, T.M.2    Brown, W.M.3
  • 25
    • 0029981138 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis), a basal ray-finned fish: Ancient establishment of the consensus vertebrate gene order
    • Noack, K., Zardoya, R., and Meyer, A. (1996). The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis), a basal ray-finned fish: ancient establishment of the consensus vertebrate gene order. Genetics 144:1165-1180.
    • (1996) Genetics , vol.144 , pp. 1165-1180
    • Noack, K.1    Zardoya, R.2    Meyer, A.3
  • 27
    • 0030124093 scopus 로고    scopus 로고
    • Mitochondrial gene order adjacent to the control region in crocodile, turtle, and tuatara
    • Quinn, T.W., and Mindell, D.P. (1996). Mitochondrial gene order adjacent to the control region in crocodile, turtle, and tuatara. Mol Phylogenet Evol 5:344-351.
    • (1996) Mol Phylogenet Evol , vol.5 , pp. 344-351
    • Quinn, T.W.1    Mindell, D.P.2
  • 28
    • 0027361711 scopus 로고
    • Sequence evolution in and around the mitochondrial control region in birds
    • Quinn, T.W., and Wilson, A.C. (1993). Sequence evolution in and around the mitochondrial control region in birds. J Mol Evol 37: 417-425.
    • (1993) J Mol Evol , vol.37 , pp. 417-425
    • Quinn, T.W.1    Wilson, A.C.2
  • 29
    • 0021876634 scopus 로고
    • The complete sequence of the Xenopus laevis mitochondrial genome
    • Roe, B.A., Ma, D.-P., Wilson, R.K., and Wong, J.F.-H. (1985). The complete sequence of the Xenopus laevis mitochondrial genome. J Biol Chem 260:9759-9774.
    • (1985) J Biol Chem , vol.260 , pp. 9759-9774
    • Roe, B.A.1    Ma, D.-P.2    Wilson, R.K.3    Wong, J.F.-H.4
  • 30
    • 0026670894 scopus 로고
    • The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates
    • Tzeng, C-S, Hui, C-F., Shen, S-C., and Huan, P.C. (1992). The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. Nucleic Acids Res 20:4853-4858.
    • (1992) Nucleic Acids Res , vol.20 , pp. 4853-4858
    • Tzeng, C.-S.1    Hui, C.-F.2    Shen, S.-C.3    Huan, P.C.4
  • 31
    • 0019887587 scopus 로고
    • Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA
    • Walberg, M.W., and Clayton, D.A. (1981). Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res 9:5411-5421.
    • (1981) Nucleic Acids Res , vol.9 , pp. 5411-5421
    • Walberg, M.W.1    Clayton, D.A.2
  • 32
    • 0023393822 scopus 로고
    • The nucleotide sequence of the heavy and light strand replication origins of the Rana catesbeiana mitochondrial genome
    • Yoneyama, Y. (1987). The nucleotide sequence of the heavy and light strand replication origins of the Rana catesbeiana mitochondrial genome. Nippon Ika Daigaku Zasshi 54:429-440.
    • (1987) Nippon Ika Daigaku Zasshi , vol.54 , pp. 429-440
    • Yoneyama, Y.1
  • 33
    • 0029916924 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolli) supports its phylogenetic position as a close relative of land vertebrates
    • Zardoya, R., and Meyer, A. (1996). The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolli) supports its phylogenetic position as a close relative of land vertebrates. Genetics 142:1249-1263.
    • (1996) Genetics , vol.142 , pp. 1249-1263
    • Zardoya, R.1    Meyer, A.2
  • 34
    • 0030822805 scopus 로고    scopus 로고
    • The complete DNA sequence of the mitochondrial genome of a "living fossil," the coelacanth (Latimeria chalumnae)
    • Zardoya, R., and Meyer, A. (1997). The complete DNA sequence of the mitochondrial genome of a "living fossil," the coelacanth (Latimeria chalumnae). Genetics 146:995-1010.
    • (1997) Genetics , vol.146 , pp. 995-1010
    • Zardoya, R.1    Meyer, A.2
  • 35
    • 0029621005 scopus 로고
    • The complete nucleotide sequence of the mitochondrial DNA of the rainbow trout, Oncorhynchus mykiss
    • Zardoya, R., Bautista, J.M., and Carrido-Pertierra, A. (1995). The complete nucleotide sequence of the mitochondrial DNA of the rainbow trout, Oncorhynchus mykiss. J Mol Evol 41:942-951.
    • (1995) J Mol Evol , vol.41 , pp. 942-951
    • Zardoya, R.1    Bautista, J.M.2    Carrido-Pertierra, A.3


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