메뉴 건너뛰기




Volumn 387, Issue 1-2, 2007, Pages 49-57

The complete mitochondrial DNA sequence of the Mekong giant catfish (Pangasianodon gigas), and the phylogenetic relationships among Siluriformes

Author keywords

Loricarioidei; Mitochondrial genome; Pangasiidae; rRNA; Siluroidei

Indexed keywords

MITOCHONDRIAL PROTEIN; RIBOSOME RNA;

EID: 33845604610     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2006.08.001     Document Type: Article
Times cited : (72)

References (35)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • Prottest: selection of best-fit models of protein evolution
    • Abascal F., Zardoya R., and Posada D. Prottest: selection of best-fit models of protein evolution. Bioinformatics 21 (2005) 2104-2105
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 0003117333 scopus 로고
    • Classification of fishes, both recent and fossil
    • Berg L.S. Classification of fishes, both recent and fossil. Trav. Inst. Zool. Acad. Sci. USSR 5 (1940) 87-517
    • (1940) Trav. Inst. Zool. Acad. Sci. USSR , vol.5 , pp. 87-517
    • Berg, L.S.1
  • 4
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 5
    • 33845661707 scopus 로고    scopus 로고
    • dePinna, M.C.C., 1993. Higher-level phylogeny of Siluriformes (Telesotei, Ostariophysi), with a new classification of the order. City University of New York, New York PhD. Thesis dissertation, p 482.
  • 6
    • 0002250517 scopus 로고    scopus 로고
    • Phylogenetic relationships of neotropical Siluriformes: history overview and synthesis of hypotheses
    • Malabarba L.R., Reis R., Vari R.P., Lucena Z.M., and Lucena C. (Eds), EDIPUCRS, Porto Alegre
    • dePinna M.C.C. Phylogenetic relationships of neotropical Siluriformes: history overview and synthesis of hypotheses. In: Malabarba L.R., Reis R., Vari R.P., Lucena Z.M., and Lucena C. (Eds). Phylogeny and Classification of Neotropical Fishes (1998), EDIPUCRS, Porto Alegre 279-330
    • (1998) Phylogeny and Classification of Neotropical Fishes , pp. 279-330
    • dePinna, M.C.C.1
  • 7
    • 3543121609 scopus 로고    scopus 로고
    • Higher-phylogeny of Siluriformes-an overview
    • Arratia G., Kapoor B.G., Chardon M., and Diogo R. (Eds), Science publishers, Plymouth
    • Diogo R. Higher-phylogeny of Siluriformes-an overview. In: Arratia G., Kapoor B.G., Chardon M., and Diogo R. (Eds). Catfishes (2004), Science publishers, Plymouth 353-384
    • (2004) Catfishes , pp. 353-384
    • Diogo, R.1
  • 8
    • 11944251524 scopus 로고    scopus 로고
    • Phylogeny, origin and biogeography of catfishes: support for a Pangean origin of 'modern teleosts' and reexamination of some Mesozoic Pangean connections between the Gondwanan and Laurasian continents
    • Diogo R. Phylogeny, origin and biogeography of catfishes: support for a Pangean origin of 'modern teleosts' and reexamination of some Mesozoic Pangean connections between the Gondwanan and Laurasian continents. Anim. Biol. 54 (2004) 331-351
    • (2004) Anim. Biol. , vol.54 , pp. 331-351
    • Diogo, R.1
  • 9
    • 0242487486 scopus 로고    scopus 로고
    • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    • Erixon P., Svennblad B., Britton T., and Oxelman B. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst. Biol. 52 (2003) 665-673
    • (2003) Syst. Biol. , vol.52 , pp. 665-673
    • Erixon, P.1    Svennblad, B.2    Britton, T.3    Oxelman, B.4
  • 10
    • 0002063927 scopus 로고    scopus 로고
    • Interrelationships of Ostariophysan fishes
    • Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds), Academic Press, San Diego
    • Fink S.V., and Fink W.L. Interrelationships of Ostariophysan fishes. In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 209-250
    • (1996) Interrelationships of Fishes , pp. 209-250
    • Fink, S.V.1    Fink, W.L.2
  • 11
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 12
    • 27744598217 scopus 로고    scopus 로고
    • The phylogenetic relationships among non-diplomystid catfishes as inferred from mitochondrial cytochrome b sequences; the search for the ictalurid sister taxon (Otophysi: Siluriformes)
    • Hardman M. The phylogenetic relationships among non-diplomystid catfishes as inferred from mitochondrial cytochrome b sequences; the search for the ictalurid sister taxon (Otophysi: Siluriformes). Mol. Phylogenet. Evol. 37 (2005) 700-720
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 700-720
    • Hardman, M.1
  • 13
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogeny
    • Huelsenbeck J.P., and Ronquist F.R. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.R.2
  • 14
    • 0000298485 scopus 로고    scopus 로고
    • Relationships of lower euteleostean fishes
    • Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds), Academic Press, San Diego
    • Johnson G.D., and Patterson C. Relationships of lower euteleostean fishes. In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 251-332
    • (1996) Interrelationships of Fishes , pp. 251-332
    • Johnson, G.D.1    Patterson, C.2
  • 15
    • 0024382879 scopus 로고
    • Dynamics of mitochodrial DNA evolution in animals: amplification and sequencing with conserved primers
    • Kocher T.D., et al. Dynamics of mitochodrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. U. S. A. 86 (1989) 6196-6200
    • (1989) Proc. Natl. Acad. Sci. U. S. A. , vol.86 , pp. 6196-6200
    • Kocher, T.D.1
  • 16
    • 25144447559 scopus 로고    scopus 로고
    • Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala
    • Lavoue S., Miya M., Inoue J.G., Saitoh K., Ishiguro N.B., and Nishida M. Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala. Mol. Phylogenet. Evol. 37 (2005) 165-177
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 165-177
    • Lavoue, S.1    Miya, M.2    Inoue, J.G.3    Saitoh, K.4    Ishiguro, N.B.5    Nishida, M.6
  • 17
    • 0037215848 scopus 로고    scopus 로고
    • Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial sequences
    • Miya M., et al. Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial sequences. Mol. Phylogenet. Evol. 26 (2003) 121-138
    • (2003) Mol. Phylogenet. Evol. , vol.26 , pp. 121-138
    • Miya, M.1
  • 18
    • 0003111729 scopus 로고
    • Anatomy, relationships and systematics of the Bagridae (Teleostei: Siluroidei) with a hypothesis of siluroid phylogeny
    • Mo T. Anatomy, relationships and systematics of the Bagridae (Teleostei: Siluroidei) with a hypothesis of siluroid phylogeny. Theses Zool. 17 (1991) 1-216
    • (1991) Theses Zool. , vol.17 , pp. 1-216
    • Mo, T.1
  • 19
    • 0002774648 scopus 로고    scopus 로고
    • Phylogenetic relationships of Loricariidae (Siluriformes) based on mitochondrial rRNA gene sequences
    • Malabarba L.R., Vari R.P., Lucena Z.M., and Lucena C. (Eds), EDIPUCRS, Porto Alegre
    • Montoya-Burgos J.I., Muller S., Weber C., and Pawlowski J. Phylogenetic relationships of Loricariidae (Siluriformes) based on mitochondrial rRNA gene sequences. In: Malabarba L.R., Vari R.P., Lucena Z.M., and Lucena C. (Eds). Phylogeny and Classification of Neotropical Fishes (1998), EDIPUCRS, Porto Alegre 363-374
    • (1998) Phylogeny and Classification of Neotropical Fishes , pp. 363-374
    • Montoya-Burgos, J.I.1    Muller, S.2    Weber, C.3    Pawlowski, J.4
  • 20
    • 1942440859 scopus 로고    scopus 로고
    • Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data
    • Moyer G.R., Burr B.M., and Krajewski C. Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data. Zool. J. Linn. Soc. 140 (2004) 551-575
    • (2004) Zool. J. Linn. Soc. , vol.140 , pp. 551-575
    • Moyer, G.R.1    Burr, B.M.2    Krajewski, C.3
  • 21
    • 0019444843 scopus 로고
    • tRNA punctuation model of RNA processing in human mitochondria
    • Ojala D., Montoya J., and Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature 290 (1981) 470-474
    • (1981) Nature , vol.290 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 23
    • 0022407678 scopus 로고
    • Rapid isolation of animal mitochondrial DNA by alkaline extraction
    • Palva T.K., and Palva E.T. Rapid isolation of animal mitochondrial DNA by alkaline extraction. FEBS Lett. 192 (1985) 267-270
    • (1985) FEBS Lett. , vol.192 , pp. 267-270
    • Palva, T.K.1    Palva, E.T.2
  • 24
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 25
    • 0033851566 scopus 로고    scopus 로고
    • Contribution to the phylogeny of pangasiid catfishes based on allozymes and mitochondrial DNA
    • Pouyaud L., Teugels G.G., Gustiano R., and Legendre M. Contribution to the phylogeny of pangasiid catfishes based on allozymes and mitochondrial DNA. J. Fish Biol. 56 (2000) 1509-1538
    • (2000) J. Fish Biol. , vol.56 , pp. 1509-1538
    • Pouyaud, L.1    Teugels, G.G.2    Gustiano, R.3    Legendre, M.4
  • 26
    • 0003036610 scopus 로고
    • Systematic revision of the Asian catfish family Pangasiidae, with biological observations and descriptions of three new species
    • Roberts T.R., and Vidthayanon C. Systematic revision of the Asian catfish family Pangasiidae, with biological observations and descriptions of three new species. Proc. Acad. Nat. Sci. Philadelphia 143 (1991) 97-144
    • (1991) Proc. Acad. Nat. Sci. Philadelphia , vol.143 , pp. 97-144
    • Roberts, T.R.1    Vidthayanon, C.2
  • 27
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes3: Bayesian phylogenetic inference under mixed models
    • Ronquist F.R., and Huelsenbeck J.P. MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.R.1    Huelsenbeck, J.P.2
  • 28
    • 0037380299 scopus 로고    scopus 로고
    • Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography
    • Saitoh K., Miya M., Inoue J.G., Ishiguro N.B., and Nishida M. Mitochondrial genomics of ostariophysan fishes: perspectives on phylogeny and biogeography. J. Mol. Evol. 56 (2003) 464-472
    • (2003) J. Mol. Evol. , vol.56 , pp. 464-472
    • Saitoh, K.1    Miya, M.2    Inoue, J.G.3    Ishiguro, N.B.4    Nishida, M.5
  • 29
    • 0031593240 scopus 로고    scopus 로고
    • Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications
    • Sbisa E., Tanzariello F., Reyes A., Pesole G., and Saccone C. Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205 (1997) 125-140
    • (1997) Gene , vol.205 , pp. 125-140
    • Sbisa, E.1    Tanzariello, F.2    Reyes, A.3    Pesole, G.4    Saccone, C.5
  • 30
    • 3042778806 scopus 로고    scopus 로고
    • Molecular phylogeny of the armored catfish family Callichthyidae (Ostariophysi, Siluriformes)
    • Shimabukuro-Dias C.K., Oliveira C., Reis R.E., and Foresti F. Molecular phylogeny of the armored catfish family Callichthyidae (Ostariophysi, Siluriformes). Mol. Phylogenet. Evol. 32 (2004) 152-163
    • (2004) Mol. Phylogenet. Evol. , vol.32 , pp. 152-163
    • Shimabukuro-Dias, C.K.1    Oliveira, C.2    Reis, R.E.3    Foresti, F.4
  • 32
    • 11944257622 scopus 로고    scopus 로고
    • State of the art of recent siluriform systematics
    • Kapoor B.G., Arratia G., Chardon M., and Diogo R. (Eds), Science Publishers Inc., Enfield, USA
    • Teugels G.G. State of the art of recent siluriform systematics. In: Kapoor B.G., Arratia G., Chardon M., and Diogo R. (Eds). Catfishes (2003), Science Publishers Inc., Enfield, USA 317-352
    • (2003) Catfishes , pp. 317-352
    • Teugels, G.G.1
  • 33
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin J., and Higgins D.G. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, J.4    Higgins, D.G.5
  • 34
    • 22844452772 scopus 로고    scopus 로고
    • Branch-length prior influences Bayesian posterior probability of phylogeny
    • Yang Z., and Rannala B. Branch-length prior influences Bayesian posterior probability of phylogeny. Syst. Biol. 54 (2005) 455-470
    • (2005) Syst. Biol. , vol.54 , pp. 455-470
    • Yang, Z.1    Rannala, B.2
  • 35
    • 0019887587 scopus 로고
    • Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA
    • Walberg M.W., and Clayton D.A. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res. 9 (1981) 5411-5421
    • (1981) Nucleic Acids Res. , vol.9 , pp. 5411-5421
    • Walberg, M.W.1    Clayton, D.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.