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Volumn 336, Issue 2, 2004, Pages 147-153

The complete mitochondrial genome of the javeline goby Acanthogobius hasta (Perciformes, Gobiidae) and phylogenetic considerations

Author keywords

Acanthogobius hasta; conserved sequence block; CSB; Fish; Long PCR; long polymerase chain reaction; Long polymerase chain reaction; maximum likelihood; Mitochondrial genome; ML; Sequencing; TAS; termination associated sequence

Indexed keywords

MITOCHONDRIAL DNA; MITOCHONDRIAL RNA; PRIMER DNA; PROTEIN; RIBOSOME RNA; TRANSFER RNA;

EID: 3042749225     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.04.009     Document Type: Article
Times cited : (114)

References (39)
  • 4
    • 0035179744 scopus 로고    scopus 로고
    • The complete sequence of the zebrafish (Danio rerio) mitochondrial genome evolutionary patterns in vertebrate mitochondrial DNA
    • Broughton R.E., Milam J.E., Roe B.A. The complete sequence of the zebrafish (Danio rerio) mitochondrial genome evolutionary patterns in vertebrate mitochondrial DNA. Genome Res. 11:2001;1958-1967
    • (2001) Genome Res. , vol.11 , pp. 1958-1967
    • Broughton, R.E.1    Milam, J.E.2    Roe, B.A.3
  • 5
    • 0031741694 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the shark Mustelus manazo: Evaluating rooting contradictions to living bony vertebrates
    • Cao Y., Waddell P.J., Okada N., Hasegawa M. The complete mitochondrial DNA sequence of the shark Mustelus manazo: evaluating rooting contradictions to living bony vertebrates. Mol. Biol. Evol. 15:1998;1637-1646
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1637-1646
    • Cao, Y.1    Waddell, P.J.2    Okada, N.3    Hasegawa, M.4
  • 6
    • 0028082089 scopus 로고
    • The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome
    • Chang Y.-C., Hunag F.-L., Lo T.-B. The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome. J. Mol. Evol. 38:1994;138-155
    • (1994) J. Mol. Evol. , vol.38 , pp. 138-155
    • Chang, Y.-C.1    Hunag, F.-L.2    Lo, T.-B.3
  • 7
    • 0012353175 scopus 로고
    • Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences
    • Doda J.N., Wright C.T., Clayton D.A. Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc. Natl. Acad. Sci. U. S. A. 78:1981;6116-6120
    • (1981) Proc. Natl. Acad. Sci. U. S. A. , vol.78 , pp. 6116-6120
    • Doda, J.N.1    Wright, C.T.2    Clayton, D.A.3
  • 8
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23S-like) ribosomal RNA structures
    • Gutell R.R., Gray M.W., Schnare M.N. A compilation of large subunit (23S and 23S-like) ribosomal RNA structures. Nucleic Acids Res. 21:1993;3055-3074
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 9
    • 0032740650 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the Atlantic salmon, Salmo salar
    • Hurst C.D., Bartlett S.E., Davidson W.S., Bruce I.J. The complete mitochondrial DNA sequence of the Atlantic salmon, Salmo salar. Gene. 239:1999;237-242
    • (1999) Gene , vol.239 , pp. 237-242
    • Hurst, C.D.1    Bartlett, S.E.2    Davidson, W.S.3    Bruce, I.J.4
  • 10
    • 0000675190 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese sardine Sardnops melanostictus
    • Inoue J.G., Miya M., Tsukamoto K., Nishida M. Complete mitochondrial DNA sequence of the Japanese sardine Sardnops melanostictus. Fish. Sci. 66:2000;924-932
    • (2000) Fish. Sci. , vol.66 , pp. 924-932
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 12
    • 0034952488 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of ayu Plecoglossus altivelis
    • Ishiguro N., Miya M., Nishida M. Complete mitochondrial DNA sequence of ayu Plecoglossus altivelis. Fish. Sci. 67:2001;482-492
    • (2001) Fish. Sci. , vol.67 , pp. 482-492
    • Ishiguro, N.1    Miya, M.2    Nishida, M.3
  • 13
    • 0030236768 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of Atlantic cod, Gadus morhua: Relevance to taxonomic studies among cod-fishes
    • Johansen S., Bakke I. The complete mitochondrial DNA sequence of Atlantic cod, Gadus morhua: relevance to taxonomic studies among cod-fishes. Mol. Mar. Biol. Biotechnol. 5:1996;203-214
    • (1996) Mol. Mar. Biol. Biotechnol. , vol.5 , pp. 203-214
    • Johansen, S.1    Bakke, I.2
  • 14
    • 3042765287 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the rockfish Sebastes schlegeli (Scorpaeniformes, Scorpaenidae)
    • Kim I.-C., Lee J.-S. The complete mitochondrial genome of the rockfish Sebastes schlegeli (Scorpaeniformes, Scorpaenidae). Mol. Cells. 17:2004;322-328
    • (2004) Mol. Cells , vol.17 , pp. 322-328
    • Kim, I.-C.1    Lee, J.-S.2
  • 15
    • 3042809186 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the floating goby Gymnogobius petschiliensis (Perciformes, Gobiidae)
    • (in press)
    • Kim Y.J., Kweon H.-S., Kim I.-C., Lee Y.-M., Lee J.-S. The complete mitochondrial genome of the floating goby Gymnogobius petschiliensis (Perciformes, Gobiidae). Mol. Cells. 17:2004;. (in press)
    • (2004) Mol. Cells , vol.17
    • Kim, Y.J.1    Kweon, H.-S.2    Kim, I.-C.3    Lee, Y.-M.4    Lee, J.-S.5
  • 16
    • 0031696736 scopus 로고    scopus 로고
    • The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions
    • Kumazawa Y., Ota H., Nishida M., Ozawa T. The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions. Genetics. 150:1998;313-329
    • (1998) Genetics , vol.150 , pp. 313-329
    • Kumazawa, Y.1    Ota, H.2    Nishida, M.3    Ozawa, T.4
  • 17
    • 0034046745 scopus 로고    scopus 로고
    • The internally self-fertilizing hermaphroditic teleost Rivulus marmoratus (Cyprinodontiformes, Rivulidae) β-actin gene: Amplification and sequence analysis with conserved primers
    • Lee J.-S. The internally self-fertilizing hermaphroditic teleost Rivulus marmoratus (Cyprinodontiformes, Rivulidae) β-actin gene: amplification and sequence analysis with conserved primers. Mar. Biotechnol. 2:2000;161-166
    • (2000) Mar. Biotechnol. , vol.2 , pp. 161-166
    • Lee, J.-S.1
  • 18
    • 0028834126 scopus 로고
    • Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: Early establishment of the vertebrate genome organization
    • Lee W.-J., Kocher T.D. Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization. Genetics. 139:1995;873-887
    • (1995) Genetics , vol.139 , pp. 873-887
    • Lee, W.-J.1    Kocher, T.D.2
  • 19
    • 0035660350 scopus 로고    scopus 로고
    • The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the first finding of duplication of control region in fish
    • Lee J.-S., Miya M., Lee Y.-S., Kim C.G., Park E.-H., Aoki Y., Nishida M. The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the first finding of duplication of control region in fish. Gene. 280:2001;1-7
    • (2001) Gene , vol.280 , pp. 1-7
    • Lee, J.-S.1    Miya, M.2    Lee, Y.-S.3    Kim, C.G.4    Park, E.-H.5    Aoki, Y.6    Nishida, M.7
  • 20
    • 0036658935 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda)
    • Machida R.J., Miya M.U., Nishida M., Nishida S. Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar. Biotechnol. 4:2002;406-417
    • (2002) Mar. Biotechnol. , vol.4 , pp. 406-417
    • MacHida, R.J.1    Miya, M.U.2    Nishida, M.3    Nishida, S.4
  • 21
    • 0033191527 scopus 로고    scopus 로고
    • Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): First example of transfer RNA gene rearrangements in bony fishes
    • Miya M., Nishida M. Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangements in bony fishes. Mar. Biotechnol. 1:1999;416-426
    • (1999) Mar. Biotechnol. , vol.1 , pp. 416-426
    • Miya, M.1    Nishida, M.2
  • 22
    • 0034497887 scopus 로고    scopus 로고
    • Use of mitogenomic information in teleostean molecular phylogenetics: A tree-bases exploration under the maximum-parsimony optimality criterion
    • Miya M., Nishida M. Use of mitogenomic information in teleostean molecular phylogenetics: a tree-bases exploration under the maximum-parsimony optimality criterion. Mol. Phylogenet. Evol. 17:2000;437-455
    • (2000) Mol. Phylogenet. Evol. , vol.17 , pp. 437-455
    • Miya, M.1    Nishida, M.2
  • 23
    • 0032373939 scopus 로고    scopus 로고
    • The complete sequence of mitochondrial genome from a gynogenetic triploid 'ginbuna' (Carassius auratus langsdorfi)
    • Murakami M., Yamashita Y., Fujitani H. The complete sequence of mitochondrial genome from a gynogenetic triploid 'ginbuna' (Carassius auratus langsdorfi). Zool. Sci. 15:1998;335-337
    • (1998) Zool. Sci. , vol.15 , pp. 335-337
    • Murakami, M.1    Yamashita, Y.2    Fujitani, H.3
  • 25
    • 0029981138 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis), a basal ray-finned fish: Ancient establishment of the consensus vertebrate gene order
    • Noack K., Zardoya R., Meyer A. The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis), a basal ray-finned fish: ancient establishment of the consensus vertebrate gene order. Genetics. 144:1996;1165-1180
    • (1996) Genetics , vol.144 , pp. 1165-1180
    • Noack, K.1    Zardoya, R.2    Meyer, A.3
  • 26
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics. 14:1998;817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 27
    • 0032934272 scopus 로고    scopus 로고
    • Phylogenetic studies of complete mitochondrial DNA molecules place cartilaginous fishes within the tree of bony fishes
    • Rasmussen A.S., Arnason U. Phylogenetic studies of complete mitochondrial DNA molecules place cartilaginous fishes within the tree of bony fishes. J. Mol. Evol. 48:1999;118-123
    • (1999) J. Mol. Evol. , vol.48 , pp. 118-123
    • Rasmussen, A.S.1    Arnason, U.2
  • 28
    • 0033515004 scopus 로고    scopus 로고
    • Molecular studies suggest that cartilaginous fishes have a terminal position in the piscine tree
    • Rasmussen A.S., Arnason U. Molecular studies suggest that cartilaginous fishes have a terminal position in the piscine tree. Proc. Natl. Acad. Sci. U. S. A. 96:1999;2177-2182
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 2177-2182
    • Rasmussen, A.S.1    Arnason, U.2
  • 29
    • 0033922130 scopus 로고    scopus 로고
    • Complete nucleotide sequence of Japanese flounder (Paralichthys olivaceus) mitochondrial genome: Structural properties and cue for resolving teleostean relationships
    • Saitoh K., Hayashizaki K., Yokoyama Y., Asahida T., Toyohara H., Yamashita Y. Complete nucleotide sequence of Japanese flounder (Paralichthys olivaceus) mitochondrial genome: structural properties and cue for resolving teleostean relationships. J. Heredity. 91:2000;271-278
    • (2000) J. Heredity , vol.91 , pp. 271-278
    • Saitoh, K.1    Hayashizaki, K.2    Yokoyama, Y.3    Asahida, T.4    Toyohara, H.5    Yamashita, Y.6
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:1997;4876-4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 32
    • 0026670894 scopus 로고
    • The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates
    • Tzeng C.S., Hui C.F., Shen S.C., Huang P.C. The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. Nucleic Acids Res. 20:1992;4853-4858
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4853-4858
    • Tzeng, C.S.1    Hui, C.F.2    Shen, S.C.3    Huang, P.C.4
  • 33
    • 0019887587 scopus 로고
    • Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA
    • Walberg M.W., Clayton D.A. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res. 9:1981;5411-5421
    • (1981) Nucleic Acids Res. , vol.9 , pp. 5411-5421
    • Walberg, M.W.1    Clayton, D.A.2
  • 34
    • 0034846279 scopus 로고    scopus 로고
    • Molecular phylogeney of gobioid fishes (Perciformes: Gobioidei) based on mitochondrial 12S rRNA sequences
    • Wang H.-Y., Tsai M.-P., Dean J., Lee S.-C. Molecular phylogeney of gobioid fishes (Perciformes: Gobioidei) based on mitochondrial 12S rRNA sequences. Mol. Phylogenet. Evol. 20:2001;390-408
    • (2001) Mol. Phylogenet. Evol. , vol.20 , pp. 390-408
    • Wang, H.-Y.1    Tsai, M.-P.2    Dean, J.3    Lee, S.-C.4
  • 35
    • 0037633395 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura)
    • Yamauchi M.M., Miya M.U. Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura). Gene. 311:2003;129-135
    • (2003) Gene , vol.311 , pp. 129-135
    • Yamauchi, M.M.1    Miya, M.U.2
  • 36
    • 0037167171 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda)
    • Yamauchi M., Miya M., Nishida M. Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene. 295:2002;89-96
    • (2002) Gene , vol.295 , pp. 89-96
    • Yamauchi, M.1    Miya, M.2    Nishida, M.3
  • 37
    • 0029916924 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates
    • Zardoya R., Meyer A. The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates. Genetics. 142:1996;1249-1263
    • (1996) Genetics , vol.142 , pp. 1249-1263
    • Zardoya, R.1    Meyer, A.2
  • 38
    • 0030822805 scopus 로고    scopus 로고
    • The complete DNA sequence of the mitochondrial genome of a 'living fossil,' the coelacanth (Latimeria chalumnae)
    • Zardoya R., Meyer A. The complete DNA sequence of the mitochondrial genome of a 'living fossil, ' the coelacanth (Latimeria chalumnae). Genetics. 146:1997;995-1010
    • (1997) Genetics , vol.146 , pp. 995-1010
    • Zardoya, R.1    Meyer, A.2
  • 39
    • 0029621005 scopus 로고
    • The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss
    • Zardoya R., Garrido-Pertierra A., Bautista J.M. The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss. J. Mol. Evol. 41:1995;942-951
    • (1995) J. Mol. Evol. , vol.41 , pp. 942-951
    • Zardoya, R.1    Garrido-Pertierra, A.2    Bautista, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.