Sequence analysis of the mobilizable lactococcal plasmid pGdh442 encoding glutamate dehydrogenase activity

Microbiology

Volumn 153, Issue 5, 2007, Pages 1664-1675

  Tanous, Catherine ^a,b   Chambellon, Emilie ^a   Yvon, Mireille ^a  

^a CEMAGREF   (France)

^b INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GLUTAMATE DEHYDROGENASE; GLUTAMATE DEHYDROGENASE 442; LACTOSE; OLIGOPEPTIDE; PLASMID DNA; PROTEINASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BIOTOPE; CHROMOSOME; CONTROLLED STUDY; DNA REPLICATION; ENZYME ACTIVITY; LACTOBACILLUS; LACTOCOCCUS LACTIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PEDIOCOCCUS; PLASMID; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN TRANSPORT; SEQUENCE ANALYSIS; STREPTOCOCCUS;

AMINO ACIDS; BASE SEQUENCE; CONJUGATION, GENETIC; DNA REPLICATION; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; GENE ORDER; GENE TRANSFER, HORIZONTAL; GENES, BACTERIAL; GLUTAMATE DEHYDROGENASE; HUMANS; LACTOCOCCUS LACTIS; METALS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLASMIDS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

LACTOBACILLUS; LACTOCOCCUS LACTIS; PEDIOCOCCUS; STREPTOCOCCUS;

EID: 34249026484     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2006/002246-0     Document Type: Article

References (57)

1. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zang, J., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., Ehrlich, S. D. & Sorokin, A. (2001). The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res 11, 731-753.
3. Brown, N. L., Barrett, S. R., Camakaris, J., Lee, B. T. & Rouch, D. A. (1995). Molecular genetics and transport analysis of the copper-resistance determinant (pco) from Escherichia coli plasmid pRJ1004. Mol Microbiol 17, 1153-1166.
4. Chandler, M. & Fayet, O. (1993). Translational frameshifting in the control of transposition in bacteria. Mol Microbiol 7, 497-503.
5. Chomczynski, P. & Sacchi, N. (1987). Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162, 156-159.
6. De Vos, W. M. & Gasson, M. J. (1989). Structure and expression of the Lactococcus lactis gene for phospho-β-galactosidase (lacG) in Escherichia coli and L. lactis. J Gen Microbiol 135, 1833-1846.
7. Dougherty, B. A., Hill, C., Weidman, J. F., Richardson, D. R., Venter, J. C. & Ross, R. P. (1998). Sequence and analysis of the 60 kb conjugative, bacteriocin-producing plasmid pMRC01 from Lactococcus lactis DPC3147. Mol Microbiol 29, 1029-1038.
8. Foley, S., Bron, S., Venema, G., Daly, C. & Fitzgerald, G. F. (1996). Molecular analysis of the replication origin of the Lactococcus lactis plasmid pCJ305. Plasmid 36, 125-141.
9. Gasson, M. J. (1983). Plasmid complements of Streptococcus lactis NCDO 712 and other lactic streptococci after protoplast-induced curing. J Bacteriol 154, 1-9.
10. Gasson, M. J. (1990). In vivo genetic systems in lactic acid bacteria. FEMS Microbiol Rev 7, 43-60.
11. Gasson, M. J., Swindell, S., Maeda, S. & Dodd, H. M. (1992). Molecular rearrangement of lactose plasmid DNA associated with high-frequency transfer and cell aggregation in Lactococcus lactis 712. Mol Microbiol 6, 3213-3223.
12. Gasson, M. J., Godon, J.-J., Pillidge, C. J., Eaton, T. J., Jury, K. & Shearman, C. A. (1995). Characterization and exploitation of conjugation in Lactococcus lactis. Int Dairy 15, 757-762.
13. Gordon, D., Abajian, C. & Green, P. (1998). Consed: a graphical tool for sequence finishing. Genome Res 8, 195-202.
14. Gostick D. O., Griffin, H. G., Shearman, C. A., Scott, C., Green, J., Gasson, M. J. & Guest, J. R. (1999). Two operons that encode FNR-like proteins in Lactococcus lactis. Mol Microbiol 31, 1523-1535.
15. Gravesen, A., Josephsen, J., von Wright, A. & Vogensen, F. K. (1995). Characterization of the replicon from the lactococcal theta-replicating plasmid pJW563. Plasmid 34, 105-118.
16. Holo, H. & Nes, I. F. (1989). High-frequency transformation, by electroporation, of Lactococcus lactis subsp. cremoris grown with glycine in osmotically stabilized media. Appl Environ Microbiol 55, 3119-3123.
17. Kearney, K., Fitzgerald, G. F. & Seegers, J. F. (2000). Identification and characterization of an active plasmid partition mechanism for the novel Lactococcus lactis plasmid pCI2000. J Bacteriol 182, 30-37.
18. Kempler, G. M. & McKay, L. L. (1979). Characterization of plasmid deoxyribonucleic acid in Streptococcus lactis subsp. diacetylactis: evidence for plasmid-linked citrate utilization. Appl Environ Microbiol 37, 316-323.
19. Kok, J. (1990). Genetics of the proteolytic system of lactic acid bacteria. FEMS Microbiol Rev 87, 15-42.
20. Lanka, E. & Wilkins, B. M. (1995). DNA processing reactions in bacterial conjugation. Annu Rev Biochem 64, 141-169.
21. Lazazzera, B. A., Kurtser, I. G., McQuade, R. S. & Grossman, A. D. (1999). An autoregulatory circuit affecting peptide signaling in Bacillus subtilis. J Bacteriol 181, 5193-5200.
22. Leelawatcharamanas, V., Chia, L. G., Charoenchai, P., Kunajakr, N., Liu, C. O. & Dunn, N. W. (1997). Plasmid-encoded copper resistance in Lactococcus lactis. Biotechnol Lett 19, 639-643.
23. Leonard, B. A., Podbielski, A., Hedberg, P. J. & Dunny, G. M. (1996). Enterococcus faecalis pheromone binding protein, PrgZ, recruits a chromosomal oligopeptide permease system to import sex pheromone cCF10 for induction of conjugation. Proc Natl Acad Sci U S A 93, 260-264.
24. Lin, C., Bolsen, K. K., Brent, B. E., Hart, R. A., Dickerson, J. T., Feyerherm, A. M. & Almutis, W. R. (1992). Ephiphytic microflora on alfalta and whole-plant corn. J Dairy Sci 75, 2484-2493.
25. Liu, C. O., Khunajakr, N., Chia, L. G., Deng, Y. M., Charoenchal, P. & Dunn, N. W. (1997). Genetic analysis of regions involved in replication and cadmium resistance of the plasmid pND302 from Lactococcus lactis. Plasmid 38, 79-90.
26. Liu, C. O., Charoechai, P., Khunajakr, N., Deng, Y. M., Widodo & Dunn, N. W. (2002). Genetic and transcriptional analysis of a novel plasmid-encoded copper resistance operon from Lactococcus lactis. Gene 297, 241-247.
27. Lucey, M., Daly, C. & Fitzgerald, G. (1993). Analysis of a region from the bacteriophage resistance plasmid pCI528 involved in its conjugative mobilization between Lactococcus strains. J Bacteriol 175, 6002-6009.
28. Mahillon, J. & Chandler, M. (1998). Insertion sequences. Microbiol Mol Biol Rev 62, 725-774.
29. Mundt J. O. & Hammer, J. L. (1968). Lactobacilli on plants. Appl Microbiol 16, 1326-1330.
30. Mundt J. O., Beattie, W. G. & Wieland, F. R. (1969). Pediococci residing on plants. J Bacteriol 98, 938-942.
31. Nicoloff, H. & Bringel, F. (2003). ISLpl1 is a functional IS30-related insertion element in Lactobacillus plantarum that is also found in other lactic acid bacteria. Appl Environ Microbiol 69, 6032-6040.
32. Nomura, M., Kobayashi, M., Narita, T., Kimoto-Nira, H. & Okamoto, T. (2006). Phenotypic and molecular characterization of Lactococcus lactis from milk and plants. J Appl Microbiol 101, 396-405.
33. O'Sullivan, D., Ross, R. P., Twomey, D. P., Fitzgerald, G. F., Hill, C. & Coffey, A. (2001). Naturally occurring lactococcal plasmid pAH90 links bacteriophage resistance and mobility functions to a food-grade selectable marker. Appl Environ Microbiol 67, 929-937.
34. O'Sullivan, D. J. & Klaenhammer, T. R. (1993). Rapid mini-prep isolation of high-quality plasmid DNA from Lactococcus and Lactobacillus spp. Appl Environ Microbiol 59, 2730-2733.
35. Perreten, V., Schwarz, F., Cresta, L., Boeglin, M., Dasen, G. & Teuber, M. (1997). Antibiotic resistance spread in food. Nature 389, 801-802.
36. Perreten, V., Schwarz, F. V., Tauber, M. & Levy, S. B. (2001). Mdt(A), a new efflux protein conferring multiple antibiotic resistance in Lactococcus lactis and Escherichia coli. Antimicrob Agents Chemother 45, 1109-1114.
37. Pratt, E. A., Fung, L. W., Flowers, J. A. & Ho, C. (1979). Membrane-bound D-lactate dehydrogenase from Escherichia coli: purification and properties. Biochemistry 18, 312-316.
38. Putman, M., van Veen, H. W. & Konings, W. N. (2000). Molecular properties of bacterial multidrug transporters. Microbiol Mol Biol Rev 64, 672-693.
39. Putman, M., van Veen, H. W., Degener, J. E & Konings, W. N. (2001). The lactococcal secondary multidrug transporter LmrP confers resistance to lincosamides, macrolides, streptogramins and tetracyclines. Microbiology 147, 2873-2880.
40. Rijnen, L., Courtin, P., Gripon, J.-C. & Yvon, M. (2000). Expression of a heterologous glutamate dehydrogenase gene in Lactococcus lactis highly improves the conversion of amino acids to aroma compounds. Appl Environ Microbiol 66, 1354-1359.
41. Salama, M. S., Musafija-Jeknic, T., Sandine, W. E. & Giovannoni, S. J. (1995). An ecological study of lactic acid bacteria: isolation of new strains of Lactococcus including Lactococcus lactis subspecies cremoris. J Dairy Sci 78, 1004-1017.
42. Sambrook, J., Russel, D. W. & Sambrook, J. (2001). Molecular Cloning: a Laboratory Manual 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
43. Seegers, J. F., Bron, S., Franke, C. M., Venema, G. & Kiewiet, R. (1994). The majority of lactococcal plasmids carry a highly related replicon. Microbiology 140, 1291-1300.
44. Siezen, R. J., Renckens, B., van Swam, I., Peters, S., van Kranenburg, R., Kleerebezem, M. & de Vos, W. M. (2005). Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment. Appl Environ Microbiol 71, 8371-8382.
45. Simpson, A. E., Skurray, R. A. & Firth, N. (2003). A single gene on the staphylococcal multiresistance plasmid pSK1 encodes a novel partitioning system. J Bacteriol 185, 2143-2152.
46. Steele, J. L. & McKay, L. L. (1989). Conjugal transfer of genetic material in lactococci: a review. J Dairy Sci 72, 3388-3397.
47. Tanous, C., Kieronczyk, A., Helinck, S., Chambellon, E. & Yvon, M. (2002). Glutamate dehydrogenase activity: a major criterion for the selection of flavour-producing lactic acid bacteria strains. Antonie van Leeuwenhoek 82, 271-278.
48. Tanous, C., Chambellon, E., Sepulchre, A.-M. & Yvon, M. (2005). The gene encoding the glutamate dehydrogenase in Lactococcus lactis is part of a remnant Tn3 transposon carried by a large plasmid. J Bacteriol 187, 5019-5022.
49. Tanous, C., Chambellon, E., Delespaul, G. & Yvon, M. (2006). Glutamate dehydrogenase activity can be naturally transmitted to Lactococcus lactis strains to stimulate the amino acid conversion to aroma compounds. Appl Environ Microbiol 72, 1402-1409.
50. Terzaghi, B. E. & Sandine, W. E. (1975). Improved medium for lactic streptococci and their bacteriophages. Appl Microbiol 29, 807-813.
51. Teuber, M. (1995). The Genus Lactococcus. London: Blackie Academic and Professional.
52. Tynkkynen, S., Buist, G., Kunji, E., Kok, J., Poolman, B., Venema, G. & Haandrikman, A. (1993). Genetic and biochemical characterization of the oligopeptide transport system of Lactococcus lactis. J Bacteriol 175, 7523-7532.
53. Utterback, T. R., McDonald, L. A. & Fuldner, R. A. (1995). A reliable, efficient protocol for 96-well plasmid DNA miniprep with rapid DNA quantification for high-throughput automated DNA sequencing. Genome Sequencing Technology 1, 1-8.
54. van Kranenburg, R. & de Vos, W. M. (1998). Characterization of multiple regions involved in replication and mobilization of plasmid pNZ4000 coding for exopolysaccharide production in Lactococcus lactis. J Bacteriol 180, 5285-5290.
55. van Veen, H. W., Putman, M., Margolles, A., Sakamoto, K. & Konings, W. N. (1999). Structure-function analysis of multidrug transporters in Lactococcus lactis. Biochim Biophys Acta 1461, 201-206.
56. Wang, A. & Macrina, F. L. (1995). Streptococcal plasmid pIP501 has a functional oriT site. J Bacteriol 177, 4199-4206.
57. Yu, W, Gillies, K., Kondo, J. K., Broadbent, J. R. & McKay, L. L. (1996). Loss of plasmid-mediated oligopeptide transport system in lactococci: another reason for slow milk coagulation. Plasmid 35, 145-155.