ISLpl1 Is a Functional IS30-Related Insertion Element in Lactobacillus plantarum that Is Also Found in Other Lactic Acid Bacteria

Applied and Environmental Microbiology

Volumn 69, Issue 10, 2003, Pages 6032-6040

  Nicoloff, Hervé ^a   Bringel, Françoise ^a  

^a UNIVERSITÉ DE STRASBOURG   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CHROMOSOMES; PLASTICITY;

INSERTION SEQUENCES (IS);

MICROBIOLOGY;

ANTIBIOTIC AGENT; BACTERIOCIN; GENE PRODUCT; PROTEIN IS150; PROTEIN ISLPL1; PROTEIN ISLPL2; SUGAR; UNCLASSIFIED DRUG; URACIL DERIVATIVE; URACIL PHOSPHORIBOSYLTRANSFERASE;

ANTIBIOTIC RESISTANCE; ARTICLE; CHROMOSOME ANALYSIS; COLD STRESS; COPY NUMBER; DATA BASE; ENVIRONMENTAL FACTOR; GENE; GENE DELETION; GENE INSERTION; GENE SEQUENCE; GENETIC LINKAGE; LACTIC ACID BACTERIUM; LACTOBACILLUS; LACTOBACILLUS PLANTARUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OENOCOCCUS; PEDIOCOCCUS; PLASMID; PLASTICITY; POINT MUTATION; PROTEIN FUNCTION; SOUTHERN BLOTTING; SPONTANEOUS MUTATION; STRAIN IDENTIFICATION; UPP GENE;

BACTERIAL PROTEINS; BASE SEQUENCE; CHROMOSOME MAPPING; DNA TRANSPOSABLE ELEMENTS; GENE DOSAGE; LACTOBACILLACEAE; LACTOBACILLUS; MOLECULAR SEQUENCE DATA; PEDIOCOCCUS; PLASMIDS; SEQUENCE ANALYSIS, DNA; TRANSPOSASES;

BACTERIA (MICROORGANISMS); INSERTION SEQUENCES; LACTOBACILLUS; LACTOBACILLUS PLANTARUM; OENOCOCCUS; PEDIOCOCCUS; POSIBACTERIA; UNIDENTIFIED INSERTION SEQUENCE;

EID: 0142040874     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.10.6032-6040.2003     Document Type: Article

References (31)

1. Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Blot, M. 1994. Transposable elements and adaptation of host bacteria. Genetica 93:5-12.
3. Bourgoin, F., A. Pluvinet, B. Gintz, B. Decaris, and G. Guedon. 1999. Are horizontal transfers involved in the evolution of the Streptococcus thermophilus exopolysaccharide synthesis loci? Gene 233:151-161.
4. Bringel, F., L. Frey, S. Boivin, and J. C. Hubert. 1997. Arginine biosynthesis and regulation in Lactobacillus plantarum: the cara gene and the argCJBDF cluster are divergently transcribed. J. Bacteriol. 179:2697-2706.
5. Bringel, F., L. Frey, and J. C. Hubert. 1989. Characterization, cloning, curing, and distribution in lactic acid bacteria of pLP1, a plasmid from Lactobacillus plantarum CCM 1904 and its use in shuttle vector construction. Plasmid 22:193-202.
6. Bringel, F., P. Quénée, and P. Tailliez. 2001. Polyphasic investigation of the diversity within Lactobacillus plantarum related strains revealed two L. plantarum subgroups. Syst. Appl. Microbiol. 24:561-571.
7. Burrus, V., G. Pavlovic, B. Decaris, and G. Guedon. 2002. Conjugative transposons: the tip of the iceberg. Mol. Microbiol. 46:601-610.
8. Danielsen, M. 2002. Characterization of the tetracycline resistance plasmid pMD5057 from Lactobacillus plantarum 5057 reveals a composite structure. Plasmid 48:98-103.
9. Ehrmann, M. A., A. Remiger, V. G. Eijsink, and R. F. Vogel. 2000. A gene cluster encoding plantaricin 1.25β and other bacteriocin-like peptides in Lactobacillus plantarum TMW1.25. Biochim. Biophys. Acta 1490:355-361.
10. Ehrmann, M. A., and R. F. Vogel. 2001. Characterisation of IS153, an IS3-family insertion sequence isolated from Lactobacillus sanfranciscensis and its use for strain differentiation. Syst. Appl. Microbiol. 24:443-450.
11. Elagöz, A. 1997. Structure et régulation de l'expression des gènes de la voie de biosynthèse des pyrimidines de Lactobacillus plantarum CCM 1904. Ph.D. thesis. Université Louis-Pasteur, Strasbourg, France.
12. Elagöz, A., A. Abdi, J. C. Hubert, and B. Kammerer. 1996. Structure and organisation of the pyrimidine biosynthesis pathway genes in Lactobacillus plantarum: a PCR strategy for sequencing without cloning. Gene 182:37-43.
13. a. Ennahar, S., D. Aoude-Werner, O. Sorokine, A. Van Dorsselaer, F. Bringel, J.-C. Hubert, and C. Hasselmann. 1996. Production of pediocin AcH by Lactobacillus plantarum WHE 92 isolated from cheese. Appl. Environ. Microbiol. 62:4381-4387.
14. Germond, J. E., L. Lapierre, M. Delley, and B. Mollet. 1995. A new mobile genetic element in Lactobacillus delbrueckii subsp. bulgaricus. Mol. Gen. Genet. 248:407-416.
15. Guedon, G., F. Bourgoin, M. Pebay, Y. Roussel, C. Colmin, J. M. Simonet, and B. Decaris. 1995. Characterization and distribution of two insertion sequences, IS1191 and iso-IS981, in Streptococcus thermophilus: does intergeneric transfer of insertion sequences occur in lactic acid bacteria cocultures? Mol. Microbiol. 16:69-78.
16. Klaenhammer, T., E. Altermann, F. Arigoni, A. Bolotin, F. Breidt, J. Broadbent, R. Cano, S. Chaillou, J. Deutscher, M. Gasson, M. van de Guchte, J. Guzzo, A. Hartke, T. Hawkins, P. Hols, R. Hutkins, M. Kleerebezem, J. Kok, O. Kuipers, M. Lubbers, E. Maguin, L. McKay, D. Mills, A. Nauta, R. Overbeek, H. Pel, D. Pridmore, M. Saier, D. van Sinderen, A. Sorokin, J. Steele, D. O'Sullivan, W. de Vos, B. Weimer, M. Zagorec, and R. Siezen. 2002. Discovering lactic acid bacteria by genomics. Antonie Leeuwenhoek 82:29-58.
17. Kleerebezem, M., J. Boekhorst, R. Van Kranenburg, D. Molenaar, O. P. Kuipers, R. Leer, R. Tarchini, S. A. Peters, H. M. Sandbrink, M. W. Fiers, W. Stiekema, R. M. Lankhorst, P. A. Bron, S. M. Hoffer, M. N. Groot, R. Kerkhoven, M. De Vries, B. Ursing, W. M. De Vos, and R. J. Siezen. 2003. Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad. Sci. USA 100:1990-1995.
18. Mahillon, J., and M. Chandler. 1998. Insertion sequences. Microbiol. Mol. Biol. Rev. 62:725-774.
19. Naumoff, D. G., and V. A. Livshits. 2001. Molecular structure of the locus for sucrose utilization by Lactobacillus plantarum: comparison with Pediococcus pentosaceus. Mol. Biol. (Engl. Trans. Mol. Biol. [Moscow]) 35:19-27.
20. Nicoloff, H. 2001. Ph.D. thesis. Université Louis-Pasteur, Strasbourg, France.
21. Nicoloff, H., J. C. Hubert, and F. Bringel. 2000. In Lactobacillus plantarum, carbamoyl phosphate is synthesized by two carbamoyl-phosphate synthetases (CPS): carbon dioxide differentiates the arginine-repressed from the pyrimidine-regulated CPS. J. Bacteriol. 182:3416-3422.
22. Sambrook, J., E. F. Fritsch, and T. Maniatis (ed.). 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
23. Skaugen, M., and I. F. Nes. 1994. Transposition in Lactobacillus sake and its abolition of lactocin S production by insertion of IS1163, a new member of the IS3 family. Appl. Environ. Microbiol. 60:2818-2825.
24. Skaugen, M., and I. F. Nes. 2000. Transposition in Lactobacillus sakei: inactivation of a second lactocin S operon by the insertion of IS1520, a new member of the IS3 family of insertion sequences. Microbiology 146:1163-1169.
25. Switzer, R. L., R. J. Turner, and Y. Lu. 1999. Regulation of the Bacillus subtilis pyrimidine biosynthetic operon by transcriptional attenuation: control of gene expression by an mRNA-binding protein. Prog. Nucleic Acid Res. Mol. Biol. 62:329-367.
26. Takami, H., C. G. Han, Y. Takaki, and E. Ohtsubo. 2001. Identification and distribution of new insertion sequences in the genome of alkaliphilic Bacillus halodurans C-125. J. Bacteriol. 183:4345-4356.
27. Vanderslice, P., W. C. Copeland, and J. D. Robertus. 1986. Cloning and nucleotide sequence of wild type and a mutant histidine decarboxylase from Lactobacillus 30a. J. Biol. Chem. 261:15186-15191.
28. Vögele, K., E. Schwartz, C. Welz, E. Schiltz, and B. Rak. 1991. High-level ribosomal frameshifting directs the synthesis of IS150 gene products. Nucleic Acids Res. 19:4377-4385.
29. Walker, D. C., and T. R. Klaenhammer. 1994. Isolation of a novel IS3 group insertion element and construction of an integration vector for Lactobacillus spp. J. Bacteriol. 176:5330-5340.
30. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
31. Zwahlen, M. C., and B. Mollet. 1994. ISL2, a new mobile genetic element in Lactobacillus helveticus. Mol. Gen. Genet. 245:334-338.