메뉴 건너뛰기




Volumn P-53, Issue , 2004, Pages 43-52

Feature Based Representation and Detection of Transcription Factor Binding Sites

Author keywords

Bayesian networks; gene expression; stochastic modelling; transcription factor binding sites

Indexed keywords

BINDING SITES; STOCHASTIC MODELS; STOCHASTIC SYSTEMS; TRANSCRIPTION; TRANSCRIPTION FACTORS;

EID: 34247645033     PISSN: 16175468     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (4)

References (28)
  • 4
    • 0036493201 scopus 로고    scopus 로고
    • Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors
    • [BJC02]
    • [BJC02] Bulyk, M. L., Johnson, P. L. F., and Church, G. M.: Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors. Nucleic Acids Research. 30(5):1255–61. 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.5 , pp. 1255-1261
    • Bulyk, M. L.1    Johnson, P. L. F.2    Church, G. M.3
  • 5
    • 0042121194 scopus 로고    scopus 로고
    • SiteSeer: Visualisation and analysis of transcription factor binding sites in nucleotide sequences
    • [BOH03]
    • [BOH03] Boardman, P. E., Oliver, S. G., and Hubbard, S. J.: SiteSeer: Visualisation and analysis of transcription factor binding sites in nucleotide sequences. Nucleic Acids Research. 31(13):3572–5. 2003.
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3572-3575
    • Boardman, P. E.1    Oliver, S. G.2    Hubbard, S. J.3
  • 6
    • 0034136782 scopus 로고    scopus 로고
    • Modeling splice sites with bayes networks
    • [CDKK00]
    • [CDKK00] Cai, D., Delcher, A., Kao, B., and Kasif, S.: Modeling splice sites with bayes networks. Bioinformatics. 16(2):152–8. 2000.
    • (2000) Bioinformatics , vol.16 , Issue.2 , pp. 152-158
    • Cai, D.1    Delcher, A.2    Kao, B.3    Kasif, S.4
  • 7
    • 84933530882 scopus 로고
    • Approximating discrete probability distributions with dependence trees
    • [CL68]
    • [CL68] Chow, C. K. and Liu, C. N.: Approximating discrete probability distributions with dependence trees. IEEE Trans. in Info. Theory. 14:462–67. 1968.
    • (1968) IEEE Trans. in Info. Theory , vol.14 , pp. 462-467
    • Chow, C. K.1    Liu, C. N.2
  • 9
    • 3142518260 scopus 로고    scopus 로고
    • Conformational characteristics of dna: Empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps
    • [EHC97]
    • [EHC97] El Hassan, M. A. and Calladine, C. R.: Conformational characteristics of dna: Empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps. Phil. Trans. R. Soc. Lond. A. 355:43–100. 1997.
    • (1997) Phil. Trans. R. Soc. Lond. A , vol.355 , pp. 43-100
    • El Hassan, M. A.1    Calladine, C. R.2
  • 10
    • 0031276011 scopus 로고    scopus 로고
    • Bayesian network classifiers
    • [FGG97]
    • [FGG97] Friedman, N., Geiger, D., and Goldszmidt, M.: Bayesian network classifiers. Machine Learning. 29(2-3):131–163. 1997.
    • (1997) Machine Learning , vol.29 , Issue.2-3 , pp. 131-163
    • Friedman, N.1    Geiger, D.2    Goldszmidt, M.3
  • 11
    • 0030863002 scopus 로고    scopus 로고
    • Eukaryotic promoter recognition
    • [FH97]
    • [FH97] Fickett, J. W. and Hatzigeorgiou, A. G.: Eukaryotic promoter recognition. Genome Res. 7(9):861–78. 1997.
    • (1997) Genome Res , vol.7 , Issue.9 , pp. 861-878
    • Fickett, J. W.1    Hatzigeorgiou, A. G.2
  • 12
    • 0002593344 scopus 로고
    • Multi-interval discretizationn of contnous-valued attributes for classification learning
    • [FI93] Chambery, France. Morgan Kauffmann
    • [FI93] Fayyad, U. and Irani, K.: Multi-interval discretizationn of contnous-valued attributes for classification learning. In: Proc. Thirtheenth International Joint Conference on Artificial Intelligence. pp. 1022–1027. Chambery, France. 1993. Morgan Kauffmann.
    • (1993) Proc. Thirtheenth International Joint Conference on Artificial Intelligence , pp. 1022-1027
    • Fayyad, U.1    Irani, K.2
  • 13
    • 0036133044 scopus 로고    scopus 로고
    • AliBaba2: context specific identification of transcription factor binding sites
    • [Gr02]
    • [Gr02] Grabe, N.: AliBaba2: context specific identification of transcription factor binding sites. In Silico Biol. 2(1):S1–15. 2002.
    • (2002) Silico Biol , vol.2 , Issue.1 , pp. S1-15
    • Grabe, N.1
  • 17
    • 0036707816 scopus 로고    scopus 로고
    • Identification of transcription factor binding sites in the human genome sequence
    • [LH02]
    • [LH02] Levy, S. and Hannenhalli, S.: Identification of transcription factor binding sites in the human genome sequence. Mamm Genome. 13(9):510–4. 2002.
    • (2002) Mamm Genome , vol.13 , Issue.9 , pp. 510-514
    • Levy, S.1    Hannenhalli, S.2
  • 18
    • 0001006209 scopus 로고
    • Local computations with probabilities on graphical structures and their application to expert systems
    • [LS88]
    • [LS88] Lauritzen, S. L. and Spiegelhalter, D. J.: Local computations with probabilities on graphical structures and their application to expert systems. Journal of Royal Statistical Society. 50(2):157–224. 1988.
    • (1988) Journal of Royal Statistical Society , vol.50 , Issue.2 , pp. 157-224
    • Lauritzen, S. L.1    Spiegelhalter, D. J.2
  • 20
    • 2442718023 scopus 로고    scopus 로고
    • Using protein-protein interactions for refining gene networks estimated from microarray data by bayesian networks
    • [NKIM04]
    • [NKIM04] Nariai, N., Kim, S., Imoto, S., and Miyano, S.: Using protein-protein interactions for refining gene networks estimated from microarray data by bayesian networks. In: PSB04. pp. 336–47. 2004.
    • (2004) PSB04 , pp. 336-347
    • Nariai, N.1    Kim, S.2    Imoto, S.3    Miyano, S.4
  • 21
    • 0033563512 scopus 로고    scopus 로고
    • The biology of eukaryotic promoter prediction–a review
    • [PBCB99]
    • [PBCB99] Pedersen, A. G., Baldi, P., Chauvin, Y., and Brunak, S.: The biology of eukaryotic promoter prediction–a review. Comput Chem. 23(3-4):191–207. 1999.
    • (1999) Comput Chem , vol.23 , Issue.3-4 , pp. 191-207
    • Pedersen, A. G.1    Baldi, P.2    Chauvin, Y.3    Brunak, S.4
  • 22
    • 0003391330 scopus 로고
    • Probabilistic Reasoning in Intelligent Systems
    • [Pe88]
    • [Pe88] Pearl, J.: Probabilistic Reasoning in Intelligent Systems. Morgan Kauffmann. 2. 1988.
    • (1988) Morgan Kauffmann , vol.2
    • Pearl, J.1
  • 24
    • 0348136790 scopus 로고    scopus 로고
    • Supervised classification for gene network reconstruction
    • [So03] (Pt 6)
    • [So03] Soinov, L. A.: Supervised classification for gene network reconstruction. Biochem Soc Trans. 31(Pt 6):1497–502. 2003.
    • (2003) Biochem Soc Trans , vol.31 , pp. 1497-1502
    • Soinov, L. A.1
  • 26
    • 0034072450 scopus 로고    scopus 로고
    • Dna binding sites: representation and discovery
    • [St00]
    • [St00] Stormo, G. D.: Dna binding sites: representation and discovery. Bioinformatics. 16(1):16–23. 2000.
    • (2000) Bioinformatics , vol.16 , Issue.1 , pp. 16-23
    • Stormo, G. D.1
  • 28
    • 0032562789 scopus 로고    scopus 로고
    • Identification of regulatory regions which confer muscle-specific gene expression
    • [WF98]
    • [WF98] Wasserman, W. W. and Fickett, J. W.: Identification of regulatory regions which confer muscle-specific gene expression. Journal of Molecular Biology. 278(1):167–81. 1998.
    • (1998) Journal of Molecular Biology , vol.278 , Issue.1 , pp. 167-181
    • Wasserman, W. W.1    Fickett, J. W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.