AliBaba2: Context specific identification of transcription factor binding sites

In Silico Biology

Volumn 2, Issue 1, 2002, Pages

  Grabe, N ^a  

^a OTTO VON GUERICKE UNIVERSITY   (Germany)

Author keywords

Bioinformatics; Clustering; Context specific prediction; Data mining; Multiple alignment; Nucleotide matrix; Promoter analysis; Sensitivity; Sequence modeling; Specificity; Transcription factor binding sites

Indexed keywords

DNA; TRANSCRIPTION FACTOR;

ACCURACY; ALGORITHM; ARTICLE; BINDING SITE; COMPUTER PROGRAM; CONTROLLED STUDY; DNA SEQUENCE; GENE CLUSTER; INFORMATION SCIENCE; METHODOLOGY; NUCLEOTIDE SEQUENCE; PREDICTION; PROMOTER REGION; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS;

ALGORITHMS; BINDING SITES; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 0036133044     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (13)

1. Signal Scan: A computer program that scans DNA sequences for eukaryotic transcriptional elements
2. MatInd and Matinspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
3. Matrix-Search 1.0: A computer program that scans DNA sequences for transcriptional elements using a database of weight matrices
4. Coupling of local folding to site specific binding of proteins to DNA
5. Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
6. Identification of regulatory regions which confer muscle-specific gene expression
7. Muscle actin genes: A first step towards computational classification of tissue specific promoters
8. TRANSFAC: An integrated system for gene expression regulation
9. The EMBL nucleotide sequence database
10. Classification scheme of eukaryotic transcription factors
11. Information content of binding sites on nucleotide sequences
12. A mathematical theory of communication