Eukaryotic promoter recognition

Genome Research

Volumn 7, Issue 9, 1997, Pages 861-878

  Fickett, James W ^a   Hatzigeorgiou, Artemis G ^b  

^a GLAXOSMITHKLINE   (United Kingdom)

^b Synaptic Ltd   (Greece)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; EUKARYOTIC CELL; GENE; GENE EXPRESSION; GENE MAPPING; GENOME; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REVIEW; RNA TRANSLATION; STRUCTURAL GENE; TRANSCRIPTION INITIATION;

EUKARYOTA;

EID: 0030863002     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.9.861     Document Type: Review

References (123)

1. Andres, V., M. Cervera, and V. Mahdavi. 1995. Determination of the consensus binding site for MEF2 expressed in muscle and brain reveals tissue-specific sequence constraints. J. Biol. Chem. 270: 23246-23249.
2. Audic, S. and J.-M. Claverie. 1997. Detection of eukaryotic promoters using Markov transition matrices. Comput. Chem. 21: (in press).
3. Barbeau, B., D. Bergeron, M. Beaulieu, Z. Nadjem, and E. Rassart. 1996. Characterization of the human and mouse FIi-1 promoter regions. Biochim. Biophys. Acta 1307: 220-232.
4. Barrick, D., K. Villaneuba, J. Childs, R. Kalil, T.D. Schneider, C.E. Lawrence, L. Gold, and D. Stormo. 1994. Quantitative analysis of ribosome binding sites in E. coli. Nucleic Acids Res. 22: 1287-1295.
5. Benham, C.J. 1996. Computation of DNA structural variability - A new predictor of DNA regulatory regions. Comp. Appl. Biosci. 12: 375-382.
6. Benoist, C., K. O'Hare, R. Breathnach, and P. Chambon. 1980. The ovalbumin gene-sequence of putative control regions. Nucleic Acids. Res. 8: 127-142.
7. Berg, O.G. and P.H. von Hippel. 1988. Selection of DNA binding sites by regulatory proteins. Trends Biochem. Sci. 13: 207-211.
8. Bernier, F., P. Soucy, and V. Luu-The. 1996. Human phenol sulfotransferase gene contains two alternative promoters: Structure and expression of the gene. DNA Cell Biol. 5: 367-375.
9. Bird, A.P. 1987. CpG islands as gene markers in the vertebrate nucleus. Trends Genet. 3: 342-347.
10. Bonven, B.J., A.L. Nielsen, P.L. Norby, F.S. Pedersen, and P. Jorgensen. 1995. E-box variants direct formation of distinct complexes with the basic helix-loop-helix protein ALFl. J. Mol. Biol. 249: 564-575.
11. Brunak, S., J. Engelbrecht, and S. Knudsen. 1991. Prediction of human mRNA donor and acceptor sites from the DNA sequence. J. Mol. Biol. 220: 49-65.
12. Bucher, P. 1990. Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J. Mol. Biol. 212: 563-578.
13. Bucher, P. and E.N. Trifonov. 1986. Compilation and analysis of eukaryotic POL II promoter sequences. Nucleic Acids Res. 14: 10009-10026.
14. Burge, C. and S. Karlin. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268: 79-94.
15. Burke, T.W. and J.T. Kadonaga. 1996. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes & Dev. 10: 711-724.
16. Burley, S.K. and R.G. Roeder. 1996. Biochemistry and structural biology of transcription factor IID (TFIID). Annu. Rev. Biochem. 65: 769-799.
17. Burset, M. and R. Guigo. 1996. Evaluation of gene structure prediction programs. Genomics 34: 353-367.
18. Cao, Z., R. . Umek, and S.L. McKnight. 1991. Regulated expression of three C/EBP isoforms during adipose conversion of 3T3-L1 cells. Genes & Dev. 5: 1538-1552.
19. Chang, C. and A. Yoshida. 1997. Human fatty aldehyde dehydrogenase gene (ALDH10): Organization and tissue-dependent expression. Genomics 40: 80-85.
20. Chao, D.M. and R.A. Young. 1996. Activation without a vital ingredient. Nature 383: 119-120.
21. Chen, Q.K., G.Z. Hertz, and G. Stormo. 1995. MATRIX SEARCH 1.0: A computer program that scans DNA sequences for transcriptional elements using a database of weight matrices. Comp. Appl. Biosci. 11: 563-566.
22. Chen, Q.K., G.Z. Hertz, and G.D. Stormo. 1997. PromFD 1.0: A computer program that predicts eukaryotic pol II promoters using strings and IMD matrices. Comp. Appl. Biosci. 13: 29-35.
23. Choo, Y. and A. Klug. 1994. Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl. Acad. Sci. 91: 11168-11172.
24. Chu, Y-Y., K.-H. Tu, Y.C. Lee, Z.-H. Kuo, H.L. Lai, and Y. Chern. 1996. Characterization of the rat A2a adenosine receptor gene. DNA Cell Biol. 15: 329-337.
25. Claverie, J.-M. and S. Audic. 1996. The statistical significance of nucleotide position-weight matrix matches. Comp. Appl. Biosci. 12: 431-440.
26. Claverie, J.-M. and L. Bougueleret. 1986. Heuristic informational analysis of sequences. Nucleic Acids Res. 14: 179-196.
27. Claverie, J.-M. and I. Sauvaget. 1985. Assessing the biological significance of primary structure consensus patterns using sequence databanks. I. Heat-shock and glucocorticoid control elements in eukaryotic promoters. Comp. Appl. Biosci. 1: 95-104.
28. Coulombe, B., J. Li, and J. Greenblatt. 1994. Topological localization of the human transcription factors IIA, IIB, TATA box-binding protein, and RNA polymerase II-associated protein 30 on a class II promoter. J. Biol. Chem. 269: 19962-19967.
29. Crowley, E.M., K. Roeder, and M. Bina. 1997. A statistical model for locating regulatory regions in genomic DNA. J. Mol. Biol. 268: 8-14.
30. Dalphin, M.E., C.M. Brown, P.A. Stockwell, and W.P. Tate. 1997. The translational signal database, TransTerm: More organisms, complete genomes. Nucleic Acids Res. 25: 246-247.
31. Decker, C.J. and R. Parker. 1994. Mechanisms of mRNA degradation in eukaryotes. Trends Biochem. Sci. 19: 336-340.
32. Diagana, T.T., D.L. North, C. Jabet, M.Y. Fiszman, S. Takeda, and R.G. Whalen. 1997. The transcriptional activity of a muscle-specific promoter depends critically on the structure of the TATA element and its binding protein. J. Mol. Biol. 265: 480-493.
33. Duret, L. and P. Bucher. 1997. Searching for regulatory elements in human noncoding sequences. Curr. Opin. Struc. Biol. 7: 399-406.
34. Efstratiadis, A., J.W. Posakony, T. Maniatis, R.M. Lawn, C. O'Connell, R.A. Spritz, J.K. DeRiel, E.G. Forget, S.M. Weissman, J.L. Slightom, A.E. Blechl, O. Smithies, F.E. Baralle, C.C. Shoulders, and N.J. Proudfoot. 1980. The structure and evolution of the human beta-globin gene family. Cell 21: 653-668.
35. Eichbaum, Q.G., R. Iyer, D.P. Raveh, C. Mathieu, and R.A.B. Ezekowitz. 1994. Restriction of interferon γ responsiveness and basal expression of the myeloid human FcγR1b gene is mediated by a functional PU. 1 site and a transcription initiator consensus. J. Exp. Med. 179: 1985-1986.
36. Emami, K.H., W.W. Navarre, and S.T. Smale 1995. Core promoter specificities of the Sp1 and VP16 transcriptional activation domains. Mol. Cell. Biol. 15: 5906-5916.
37. Faisst, S. and S. Meyer. 1992. Compilation of vertebrate encoded transcription factors. Nucleic Acids Res. 20: 3-26.
38. Fickett, J.W. 1996a. Finding genes by computer: The state of the art. Trends Genet. 12: 316-320.
39. _. 1996b. Coordinate positioning of MEF2 and myogenin binding sites. Gene 172: GC19-GC32.
40. _. 1996c. Quantitative discrimination of MEF2 sites. Mol. Cell Biol. 16: 437-441.
41. Fondrat, C. and A. Kalogeropoulos. 1994. Approaching the function of new genes by the detection of their potential upstream activation sequences in Saccharomyces cerevisiae: Application to chromosome III. Curr. Genet. 25: 396-406.
42. Frech, K., K. Quandt, and T. Werner. 1997a. Software for the analysis of DNA sequence elements of transcription. Comp. Appl. Biosci. 13: 89-97.
43. _. 1997b. Finding protein-binding sites in DNA sequences: The next generation. Trends Biochem. Sci. 22: 103-104.
44. Gardiner-Garden, M. and M. Frommer. 1987. CpG islands in vertebrate genomes. J. Mol. Biol. 196: 261-282.
45. Gelfand, M.S. 1995. Prediction of function in DNA sequence analysis. J. Comp. Biol. 2: 87-115.
46. Gelfand, M.S., A.A. Mironov, and P.A. Pevzner. 1996. Gene recognition via spliced sequence alignment. Proc. Nat. Acad. Sci. 93: 9061-9066.
47. Ghosh, D. 1990. A relational database of transcription factors. Nucleic Acids. Res. 18: 1749-1756.
48. Gish, W. and D.J. States. 1993. Identification of protein coding regions by database similarity search. Nature Genet. 3: 266-272.
49. Grande, J.P., D.C. Melder, D.L. Kluge, and E.D. Wieben. 1996. Structure of the rat collagen IV promoter. Biochim. Biophys. Acta 1309: 85-88.
50. Harbury, P.A.B. and K. Struhl. 1989. Functional distinctions between yeast TATA elements. Mol. Cell. Biol. 9: 5298-5304.
51. Hatzigeorgiou, A.C., N. Mache, and M. Reczko. 1996. Functional site prediction on the DNA sequence by artificial neural networks. In Proceedings of the IEEE International Joint Symposia on Intelligence and Systems, pp. 12-17. IEEE Computer Society Press, Los Alamitos, CA.
52. Hofmann, K. and P. Bucher. 1995. The FHA domain: A putative nuclear signalling domain found in protein kinases and transcription factors. Trends Biochem. Sci. 20: 347-349.
53. Hsu, H.-L., L. Huang, J.T. Tsan, W. Funk, W.E. Wright, J.-S. Hu, R.E. Kingston, and R. Baer. 1994. Preferred sequences for DNA recognition by the TALI helix-loop-helix proteins. Mol. Cell. Biol. 14: 1256-1265.
54. Hutchinson, G.B. 1996. The prediction of vertebrate promoter regions using differential hexamer frequency analysis. Comp. Appl. Biosci. 12: 391-398.
55. Ince, T.A. and K.W. Scotto. 1995. A conserved downstream element defines a new class of RNA polymerase 11 promoters. J. Biol. Chem. 270: 30249-30252.
56. II30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor. Cell 79: 107-117.
57. Javahery, R., A. Khachi, K. Lo, B. Zenzie-Gregory, and S.T. Smale. 1994. DNA sequence requirements for transcriptional initiator activity in mammalian cells. Mol. Cell Biol. 14:116-127.
58. Juo, Z.J., T.K. Chiu, P.M. Leiberman, I. Baikalov, A.J. Berk, and R.E. Dickerson. 1996. How proteins recognize the TATA box. J. Mol. Biol. 261: 239-254.
59. Kadesch, T. 1993. Consequences of heteromeric interactions among helix-loop-helix proteins. Cell Growth Differ. 4: 49-55.
60. Kaiser, K. and M. Meisterernst. 1996. The human general co-factors. Trends Biochem. Sci. 21: 342-345.
61. Kao, W.Y., L.L. Dworkin, J.A. Briggs, and R.C. Briggs. 1996. Characterization of the human myeloid cell nuclear differentiation antigen gene promoter. Biochim. Biophys. Acta 1808: 201-204.
62. Kaufmann, J., C.P. Verrijzer, J. Shao, and S.T. Smale. 1996. CIF, an essential cofactor for TFIID-dependent initiator function. Genes & Dev. 10: 873-886.
63. Kel, O.V., A.G. Romachenko, A.E. Kel, A.N. Naumochkin, and N.A. Kolchanov. 1994. Structure of data representation in TRRD - Database of transcription regulatory regions on eukaryotic genomes. In Proceedings of the 28th Annual Hawaii International Conference on System Sciences v5, Biotechnology Computing, pp. 42-51. IEEE Computer Society Press, Los Alamitos, CA.
64. Kingston, R.E., C.A. Bunker, and A.N. Imbalzano. 1996. Repression and activation by multiprotein complexes that alter chromatin structure. Genes & Dev. 10: 905-920.
65. Kondrakhin, Y.V., A.E. Kel, N.A. Kolchanov, A.G. Romashchenko, and L. Milanesi. 1995. Eukaryotic promoter recognition by binding sites for transcription factors. Comp. Appl. Biosci. 11: 477-488.
66. Kondrakhin, Y., V. Shamir, and N. Kolchanov. 1994. Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3′ terminal processing sites. Comp. Appl. Biosci. 10: 597-603.
67. Kornberg, R.D. 1996. RNA polymerase II transcription control. Trends Biochem. Sci. 21: 325-326.
68. Kozak, M. 1992. Regulation of translation in eukaryotic systems. Annu. Rev. Cell Biol. 8: 197-225.
69. _. 1996. Interpreting cDNA sequences: Some insights from studies on translation. Mammal. Genome 7: 563-574.
70. Kraus, R.J., E.E. Murray, S.R. Wiley, N.M. Zink, K. Loritz, G.W. Gelembiuk, and J.E. Mertz. 1996. Experimentally determined weight matrix definitions of the initiator and TBP binding site elements of promoters. Nucleic Acids Res. 24: 1531-1539.
71. Larsen, N.I., J. Engelbrecht, and S. Brunak. 1995. Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal. Nucleic Acids Res. 23: 1223-1230.
72. Le, F., K. Groshan, X.P. Zeng, and E. Richelson. 1997. Characterization of the genomic structure, promoter region, and a tetranucleotide repeat polymorphism of the human neurotensin receptor gene. J. Biol. Chem. 272: 1315-1322.
73. Li, H. and Y. Capetanaki. 1994. An E box in the desmin promoter cooperates with the E box and MEF-2 sites of a distal enhancer to direct muscle-specific transcription. EMBO J. 13: 3580-3589.
74. Mahnke-Zizelman, D.K., R. Eddy, T.B. Shows, and R.L. Sabina. 1996. Characterization of the human AMPD3 gene reveals that 5′ exon usage is subject to transcriptional control by three tandem promoters and alternative splicing. Biochim. Biophys. Acta 1306: 75-92.
75. Martinez, E., Q. Zhou, N.D. L-Etoile, T. Oelgeschlaeger, A.J. Berk, and R.G. Roeder. 1,995. Core promoter-specific function of a mutant transcription factor TFIID defective in TATA-box binding. Proc. Natl. Acad. Sci. 92: 11864-11868.
76. Matis, S., Y. Xu, M. Shah, X. Guan, J.R. Einstein, R. Mural, and E. Uberbacher. 1996. Detection of RNA polymerase II promoters and polyadenylation sites in human DNA sequence. Comput. Chem. 20: 135-140.
77. McKeown, M. 1992. Alternative mRNA splicing. Annu. Rev. Cell. Biol. 8: 133-155.
78. Naville, D., C. Jaillard, L. Barjhoux, P. Durand, and M. Begeot. 1997. Genomic structure and promoter characterization of the human ACTH receptor gene. Biochem. Biophys. Res. Commun. 230: 7-12.
79. Nomoto, K., N. Shibata, K. Kitamura, Y. Mizuno, and K. Kikuchi. 1996. Molecular cloning and analysis of the 5′-flanking region of the rat PP1 α gene. Biochim. Biophys. Acta 1309: 221-225.
80. Novina, C.D. and A.L. Roy. 1996. Core promoters and transcriptional control. Trends Genet. 12: 351-355.
81. Osada, S., H. Yamamoto, T. Nishihara, and M. Imagawa. 1996. DNA binding specificity of the CCAAT/enhancer-binding protein transcription factor family. J. Biol. Chem. 271: 3891-3896.
82. Pattison, S., D.G. Skalnik, and A. Roman. 1997. CCAAT displacement protein, a regulator of differentiation-specific gene expression, binds a negative regulatory element within the 5′ end of the human papillomavirus type 6 long control region. J. Virol. 71:2013-2022.
83. Pedersen, A.G., P. Baldi, S. Brunak, and Y. Chauvin. 1996. Characterization of prokaryotes and eukaryotic promoters using hidden Markov models. In The Fourth International Conference on Intelligent Systems in Molecular Biology (ed D.J. States, P. Agarwal, T. Gaasterland, L. Hunter, and R. Smith), pp. 182-191. AAAI Press, Menlo Park, CA.
84. Prashar, Y. and S.M. Weissman. 1996. Analysis of differential gene expression by display of 3′ end restriction fragments of cDNAs. Proc. Natl. Acad. Sci. 93: 659-663.
85. Prestridge, D.S. 1995. Predicting Pol II promoter sequences using transcription factor binding sites. J. Mol. Biol. 249: 923-932.
86. Ptashne, M. and A. Gann. 1997. Transcriptional activation by recruitment. Nature 386: 569-577.
87. Purnell, B.A., P.A. Emanuel, and D.S. Gilmour. 1994. TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes. Genes & Dev. 8: 830-842.
88. Roeder, R.G. 1996. The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21: 327-335.
89. Rogers, G.R., G.M. Nedialka, V. De Laurenzi, W.B. Rizzo, and J.G. Compton. 1997. Genomic organization and expression of the human fatty aldehyde dehydrogenase gene (FALDH). Genomics 39: 127-135.
90. Rosenblueth, D.A., D. Thieffry, A.M. Huerta, H. Salgado, and J. Collado-Vides. 1996. Syntactic recognition of regulatory regions in Escherichia coli. Comp. Appl. Biosci. 12: 415-422.
91. Schneider, T.D., G.D. Stormo, L. Gold, and A. Ehrenfeucht. 1986. Information content of binding sites on nucleotide sequences. J. Mol. Biol. 188: 415-431.
92. + channel Kir3.1 (KCNJ3/GHIRK1). Genomics 39: 279-288.
93. Shago, M. and V. Giguere. 1996. Isolation of a novel retinoic acid-responsive gene by selection of genomic fragments derived from CpG-island-enriched DNA. Mol. Cell Biol. 16: 4337-4348.
94. Shine, J. and L. Dalgarno. 1974. The 3′ terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. 71: 1342-1346.
95. Silins, G., S. Grimmond, M. Egerton, and N. Hayward. 1997. Analysis of the promoter region of the human VEGF-related factor gene. Biochem. Biophys. Res. Commun. 230: 413-418.
96. Singer, V.L., C.R. Wobbe, and K. Struhl. 1990. A wide variety of DNA sequences can functionally replace a yeast TATA element for transcriptional activation. Genes & Dev. 4: 636-645.
97. Sinha, S., S.N. Maity, M.F. Seldin, and B. de Crombrugghe. 1996. Chromosomal assignment and tissue expression of CBF-C/NFY-C, the third subunit of the mammalian CCAAT-binding factor. Genomics 37: 260-263.
98. Smale, S.T. 1997. Transcription initiation from TATA-less promoters within eukaryotic protein coding genes. Biochim. Biophys. Acta. 1351: 73-88.
99. Solovyev, V. and A. Salamov. 1997. The Gene-Finder computer tools for analysis of human and model organism genome sequences. In Proceedings of the Fifth Internationa/Conference on Intelligent Systems for Molecular Biology (ed. T. Gaasterland, P. Karp, K. Karplus, C. Ouzounis, C. Sander, and A. Valencia), pp. 294-302. AAAI Press, Menlo Park, CA.
100. Stargell, L.A. and K. Struhl. 1996. Mechanisms of transcriptional activation in vivo: Two steps forward. Trends Genet. 12:311-315.
101. Struhl, K. 1986. Constitutive and inducible Saccharomyces cerevisiae promoters: Evidence for two distinct molecular mechanisms. Mol. Cell Biol. 6: 3847-3853.
102. Suzuki, M. and N. Yagi. 1994. DNA recognition code of transcription factors in the helix-turn-helix, probe helix, hormone receptor, and zinc finger families. Proc. Natl. Acad. Sci. 91: 12357-12361.
103. Swinnen, J.V., M. Esquenet, J. Rosseels, F. Claessens, W. Rombauts, W. Heyns, and G. Verhoeven. 1996. A human gene encoding daizepam-binding inhibitor/acyl-CoA-binding protein: Transcription and hormonal regulation in the androgen-sensitive human prostatic adenocarcinoma cell line LNCaP. DNA Cell. Biol. 15: 197-208.
104. Szabo, G., Z. Katarova, E. Kortvely, R.J. Greenspan, and Z. Urban. 1996. Structure and the promoter region of the mouse gene encoding the 67 kD form of glutamic acid decarboxylase. DNA Cell Biol. 15: 1081-1091.
105. Tjian, R. 1995. Molecular machines that control genes. Sci. Am. 272: 54-61.
106. Toulouse, A., J. Morin, M. Pelletier, and W.E.C. Bradley. 1996. Structure of the human retinoic acid receptor β1 gene. Biochim. Biophys. Acta 1309: 1-4.
107. Tronche, F., F. Ringeisen, M. Blumenfeld, M. Yaniv, and M. Pontoglio. 1997. Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome. J. Mol. Biol. 266: 231-245.
108. Tsutsumi, K.-I., K. Ito, T. Yabuki, and K. Ishikawa. 1993. A1F-B, a novel CCAAT-binding transcription activator that interacts with the aldolase B promoter. FEBS Lett. 321:51-54.
109. Usheva, A. and T. Shenk. 1994. TATA-binding protein independent initiation: YY1, TFIIB and RNA polymerase II direct basal transcription on supercoiled template DNA. Cell 76: 1115-1121.
110. Verrijzer, C.P. and R. Tjian. 1996. TAFs mediate transcriptional activation and promoter selectivity. Trends Biochem. Sci. 21: 338-342.
111. II150: Similarity to yeast gene TSM-1 and specific binding to core promoter DNA. Science 264:933-941.
112. Wahle, E. and W. Keller. 1996. The biochemistry of polyadenylation. Trends Biochem. Sci. 21: 247-250.
113. II70 reveal conserved interactions with other subunits of TFIID. EMBO J. 12: 5303-5309.
114. Wiemann, S., B. Steuer, A. Alonso, V. Kinzel, and W. Pyerin. 1996. Promoter of the gene encoding the bovine catalytic subunit of cAMP-dependent protein kinase isoform Cβ2. Biochim. Biophys. Acta 1309: 211-220.
115. Wiley, S.R., R.J. Kraus, and J.E. Mertz. 1992. Functional binding of the "TATA" box binding component of transcription factor TFIID to the -30 region of TATA-less promoters. Proc. Natl. Acad. Sci. 89: 5814-5818.
116. Wingender, E., P. Dietze, H. Karas, and R. Knueppel. 1996. TRANSFAC: A database on transcription factors and their DNA binding sites. Nucleic Acids Res. 24: 238-241.
117. Wolffe, A.P. 1994. Architectural transcription factors. Science 264: 1100-1101.
118. Wright, W.E., M. Binder, and W. Funk. 1991. Cyclic amplification and selection of targets (CASTing) for the myogenin consensus binding site. Mol. Cell. Biol. 11:4104-4110.
119. Wright, K.L., B.J. Vilen, Y. Itoh-Lindstrom, T.L. Moore, G. Li, M. Criscitiello, P. Cogswell, J.B. Clarke, and J.P.-Y. Ting. 1994. CCAAT box binding protein NF-Y facilitates in vivo recruitment of upstream DNA binding transcription factors. EMBO J. 13: 4042-4053.
120. Wright, W.E. and W.D. Funk. 1993. CASTing for multicomponent DNA-binding complexes. Trends Biochem. Sci. 18: 77-80.
121. Yoo, J., R.T. Stone, S.M. Kappes, S.S. Toldo, R. Fries, and C.W. Beattie. 1996. Genomic organization and chromosomal mapping of the bovine FAS/APO-1 gene. DNA Cell Biol. 15: 377-385.
122. Yuh, C.-H. and E.H. Davidson. 1996. Modular cis-regulatory organization of Endo16, a gut-specific gene of the sea urchin embryo. Development 122: 1069-1082.
123. Zhao, Y.-Y., P. Qasba, M.A.Q. Siddiqui, and A. Kumar. 1993. Multiple CCAAT binding proteins regulate the expression of the angiotensinogen gene. Cell. Mol. Biol. Res. 39: 727-737.