메뉴 건너뛰기




Volumn 92, Issue 9, 2007, Pages 3275-3283

Measuring the folding transition time of single RNA molecules

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 34247589224     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.094623     Document Type: Article
Times cited : (43)

References (33)
  • 1
    • 0037057630 scopus 로고    scopus 로고
    • Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase
    • Ha, T., I. Rasnik, W. Cheng, H. P. Babcock, G. H. Gauss, T. M. Lohman, and S. Chu. 2002. Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. Nature. 419:638-641.
    • (2002) Nature , vol.419 , pp. 638-641
    • Ha, T.1    Rasnik, I.2    Cheng, W.3    Babcock, H.P.4    Gauss, G.H.5    Lohman, T.M.6    Chu, S.7
  • 2
    • 0033813064 scopus 로고    scopus 로고
    • Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy
    • Weiss, S. 2000. Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy. Nat. Struct. Biol. 7:724-729.
    • (2000) Nat. Struct. Biol , vol.7 , pp. 724-729
    • Weiss, S.1
  • 6
  • 9
    • 35949038838 scopus 로고
    • Thermodynamic fluctuations in a reacting system-measurement by fluorescence correlation spectroscopy
    • Magde, D., E. Elson, and W. W. Webb. 1972. Thermodynamic fluctuations in a reacting system-measurement by fluorescence correlation spectroscopy. Phys. Rev. Lett. 29:705-708.
    • (1972) Phys. Rev. Lett , vol.29 , pp. 705-708
    • Magde, D.1    Elson, E.2    Webb, W.W.3
  • 10
    • 0016379116 scopus 로고
    • Fluorescence correlation spectroscopy. I. Conceptual basis and theory
    • Elson, E. L., and D. Magde. 1974. Fluorescence correlation spectroscopy. I. Conceptual basis and theory. Biopolymers. 13:1-27.
    • (1974) Biopolymers , vol.13 , pp. 1-27
    • Elson, E.L.1    Magde, D.2
  • 12
    • 0016651661 scopus 로고
    • Fluorescence correlation spectroscopy and Brownian rotational diffusion
    • Aragon, S. R., and R. Pecora. 1975. Fluorescence correlation spectroscopy and Brownian rotational diffusion. Biopolymers. 14:119-137.
    • (1975) Biopolymers , vol.14 , pp. 119-137
    • Aragon, S.R.1    Pecora, R.2
  • 13
    • 0032506222 scopus 로고    scopus 로고
    • Dynamics of fluorescence fluctuations in green fluorescent protein observed by fluorescence correlation spectroscopy
    • Haupts, U., S. Maiti, P. Schwille, and W. W. Webb. 1998. Dynamics of fluorescence fluctuations in green fluorescent protein observed by fluorescence correlation spectroscopy. Proc. Natl. Acad. Sci. USA. 95:13573-13578.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 13573-13578
    • Haupts, U.1    Maiti, S.2    Schwille, P.3    Webb, W.W.4
  • 14
    • 0031116509 scopus 로고    scopus 로고
    • Fast interactions between Rh6G and dGTP in water studied by fluorescence correlation spectroscopy
    • Widengren, J., J. Dapprich, and R. Rigler. 1997. Fast interactions between Rh6G and dGTP in water studied by fluorescence correlation spectroscopy. Chem. Phys. 216:417-426.
    • (1997) Chem. Phys , vol.216 , pp. 417-426
    • Widengren, J.1    Dapprich, J.2    Rigler, R.3
  • 15
    • 0037461522 scopus 로고    scopus 로고
    • Statistical approaches for probing single-molecule dynamics photon-by-photon
    • Yang, H., and X. S. Xie. 2002. Statistical approaches for probing single-molecule dynamics photon-by-photon. J. Chem. Phys. 117:10965-10979.
    • (2002) J. Chem. Phys , vol.117 , pp. 10965-10979
    • Yang, H.1    Xie, X.S.2
  • 16
    • 0032555119 scopus 로고    scopus 로고
    • Kinetics of conformational fluctuations in DNA hairpin-loops
    • Bonnet, G., O. Krichevsky, and A. Libchaber. 1998. Kinetics of conformational fluctuations in DNA hairpin-loops. Proc. Natl. Acad. Sci. USA. 95:8602-8606.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 8602-8606
    • Bonnet, G.1    Krichevsky, O.2    Libchaber, A.3
  • 17
    • 0020417286 scopus 로고
    • Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA
    • Kruger, K., P. J. Grabowski, A. J. Zaug, J. Sands, D. E. Gottschling, and T. R. Cech. 1982. Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA. Cell 31:147-57.
    • (1982) Cell , vol.31 , pp. 147-157
    • Kruger, K.1    Grabowski, P.J.2    Zaug, A.J.3    Sands, J.4    Gottschling, D.E.5    Cech, T.R.6
  • 18
    • 0025305796 scopus 로고
    • DNA cleavage catalyzed by the ribozyme from Tetrahymena
    • Herschlag, D., and T. R. Cech. 1990. DNA cleavage catalyzed by the ribozyme from Tetrahymena. Nature. 344:405-409.
    • (1990) Nature , vol.344 , pp. 405-409
    • Herschlag, D.1    Cech, T.R.2
  • 19
    • 0030952270 scopus 로고    scopus 로고
    • The P4-P6 domain directs higher order folding of the Tetrahymena ribozyme core
    • Doherty, E. A., and J. A. Doudna. 1997. The P4-P6 domain directs higher order folding of the Tetrahymena ribozyme core. Biochemistry. 36:3159-3169.
    • (1997) Biochemistry , vol.36 , pp. 3159-3169
    • Doherty, E.A.1    Doudna, J.A.2
  • 22
    • 0030452773 scopus 로고    scopus 로고
    • New loop-loop tertiary interactions in self-splicing introns of subgroup 1C and ID: A complete 3D model of the Tetrahymena thermophila ribozyme
    • Lehnert, V., L. Jaeger, F. Michel, and E. Westhof. 1996. New loop-loop tertiary interactions in self-splicing introns of subgroup 1C and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem. Biol. 3:993-1009.
    • (1996) Chem. Biol , vol.3 , pp. 993-1009
    • Lehnert, V.1    Jaeger, L.2    Michel, F.3    Westhof, E.4
  • 23
    • 0034100560 scopus 로고    scopus 로고
    • Small angle X-ray scattering reveals a compact intermediate in RNA folding
    • Russell, R., I. S. Millett, S. Doniach, and D. Herschlag. 2000. Small angle X-ray scattering reveals a compact intermediate in RNA folding. Nat. Struct. Biol. 7:367-370.
    • (2000) Nat. Struct. Biol , vol.7 , pp. 367-370
    • Russell, R.1    Millett, I.S.2    Doniach, S.3    Herschlag, D.4
  • 24
    • 0033607150 scopus 로고    scopus 로고
    • RNA tertiary folding monitored by fluorescence of covalently attached pyrene
    • Silverman, S. K., and T. R. Cech. 1999. RNA tertiary folding monitored by fluorescence of covalently attached pyrene. Biochemistry. 38:14224-14237.
    • (1999) Biochemistry , vol.38 , pp. 14224-14237
    • Silverman, S.K.1    Cech, T.R.2
  • 25
    • 0037452797 scopus 로고    scopus 로고
    • Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme
    • Rangan, P., B. Masquida, E. Westhof, and S. A. Woodson. 2003. Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme. Proc. Natl. Acad. Sci. USA. 100:1574-1579.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 1574-1579
    • Rangan, P.1    Masquida, B.2    Westhof, E.3    Woodson, S.A.4
  • 26
    • 27744599888 scopus 로고
    • Transfer mechanisms of electronic excitation
    • Forster, T. 1959. Transfer mechanisms of electronic excitation. Discuss. Faraday Soc. 27:7-17.
    • (1959) Discuss. Faraday Soc , vol.27 , pp. 7-17
    • Forster, T.1
  • 27
    • 0026680843 scopus 로고
    • Site-specific modification of pre-mRNA: The 29-hydroxyl groups at the splice sites
    • Moore, M. J., and P. A. Sharp. 1992. Site-specific modification of pre-mRNA: the 29-hydroxyl groups at the splice sites. Science. 256:992-997.
    • (1992) Science , vol.256 , pp. 992-997
    • Moore, M.J.1    Sharp, P.A.2
  • 29
    • 0033702974 scopus 로고    scopus 로고
    • Characterization of photoinduced isomerization and back-isomerization of the cyanine dye Cy5 by fluorescence correlation spectroscopy
    • Widengren, J., and P. Schwille. 2000. Characterization of photoinduced isomerization and back-isomerization of the cyanine dye Cy5 by fluorescence correlation spectroscopy. J. Phys. Chem. A. 104:6416-6428.
    • (2000) J. Phys. Chem. A , vol.104 , pp. 6416-6428
    • Widengren, J.1    Schwille, P.2
  • 30
    • 0038440584 scopus 로고    scopus 로고
    • Single molecule detection of DNA looping by NgoMIV restriction endonuclease
    • Katiliene, Z., E. Katilius, and N. W. Woodbury. 2003. Single molecule detection of DNA looping by NgoMIV restriction endonuclease. Biophys. J. 84:4053-4061.
    • (2003) Biophys. J , vol.84 , pp. 4053-4061
    • Katiliene, Z.1    Katilius, E.2    Woodbury, N.W.3
  • 33
    • 31944441873 scopus 로고    scopus 로고
    • A three-state mechanism for DNA hairpin folding characterized by multiparameter fluorescence fluctuation spectroscopy
    • Jung, J., and A. VanOrden. 2006. A three-state mechanism for DNA hairpin folding characterized by multiparameter fluorescence fluctuation spectroscopy. J. Am. Chem. Soc. 128:1240-1249.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 1240-1249
    • Jung, J.1    VanOrden, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.