Genetic markers in population studies of Atlantic salmon Salmo salar L.: Analysis of DNA sequences

Russian Journal of Genetics

Volumn 43, Issue 4, 2007, Pages 341-353

  Artamonova, V S ^a  

^a VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

SALMO SALAR;

EID: 34247341342     PISSN: 10227954     EISSN: 16083369     Source Type: Journal    
DOI: 10.1134/S1022795407040011     Document Type: Review

References (154)

1. Mednikov, B.M., Shubina, E.A., Mel'nikova, M.N., and Savvaitova, K.A., Problem of Genus Status of Pacific Salmon and Trout (Gene Systematics Analysis), Vopr. Ikhtio., 1999, vol. 39, no. 1, pp. 14-21.
2. Elo, K., Ivanoff, S., Vuorinen, J.A., and Piironen, J., Inheritance of RAPD Markers and Detection of Interspecific Hybridization with Brown Trout and Atlantic Salmon, Aquaculture, 1997, vol. 152, pp. 55-65.
3. Pendas, A.M., Moran, P., and Garcia-Vazquez, E., Organization and Chromosomal Location of the Major Histone Cluster in Brown Trout, Atlantic Salmon and Rainbow Trout, Chromosoma, 1994, vol. 103, no. 2, pp. 147-152.
4. Perez, J., Martinez, J.L., Moran, P., et al., Identification of Atlantic Salmon × Brown Trout Hybrids with a Nuclear Marker Useful for Evolutionary Studies, J. Fish Biol., 1999, vol. 54, no. 2, pp. 460-464.
5. Garcia-Vazquez, E., Moran, P., Perez, J., et al., Interspecific Barriers between Salmonids When Hybridization Is Due to Sneak Mating, Heredity, 2002, vol. 89, no. 4, pp. 288-292.
6. Gross, R., Nilsson, J., and Schmitz, M., A New Species-Specific Nuclear DNA Marker for Identification of Hybrids between Atlantic Salmon and Brown Trout, J. Fish Biol., 1996, vol. 49, no. 3, pp. 537-540.
7. Matthews, M.A., Poole, W.R., Thompson, C.E., et al., Incidence of Hybridization Between Atlantic Salmon, Salmo salar L. and Brown Trout, Salmo trutta L., in Ireland, Fisheries Manag. Ecol., 2000, vol. 7, pp. 337-347.
8. Hartley, S.E., High Incidence of Atlantic Salmon × Brown Trout Hybrids in a Lake District Stream, J. Fish Biol., 1996, vol. 48, no. 1, pp. 151-154.
9. Pendas, A.M., Moran, P., Martinez, J.L., and Garcia-Vazquez, E., Applications of 5S rDNA in Atlantic Salmon, Brown Trout, and in Atlantic Salmon Brown Trout Hybrid Identification, Mol. Ecol., 1995, vol. 4, no. 2, pp. 275-276.
10. Langiader, C.R., Guyomard, R., and Roche, P., Mise en evidence de la reproduction naturelle du saumon atlantique (Salmo salar L.) dans un affluent francais du Rhin par analyse genetique d'oeufs preleves dans des frayeres, Bull. Fr. Peche Piscicult., 1996, vol. 343, pp. 183-188.
11. Paaver, T., Gross, R., and Vasemagi, A., Genetic Characterization of Estonian Salmon Populations, in Present and Potential Production of Salmon in Estonian Rivers, Kangur, M. and Wahlberg, B., Eds., Tallinn: Estonian Acad., 2001, pp. 77-84.
12. Garcia-Vazquez, E., Moran, P., Martinez, J.L., et al., Alternative Mating Strategies in Atlantic Salmon and Brown Trout, J. Hered., 2001, vol. 92, no. 2, pp. 146-149.
13. Ayllon, F., Martinez, J.L., Davaine, P., et al., Interspecific Hybridization between Atlantic Salmon and Brown Trout Introduced in the Subantarctic Kerguelen Islands, Aquaculture, 2004, vol. 230, pp. 81-88.
14. Bagliniere, J.L., Tabet Aoul, K., and Menella, J.Y., Occurence of an Adult Atlantic Salmon in the River Rhone, France, J. Fish Biol., 2002, vol. 60, pp. 249-255.
15. Murata, S., Takasaki, N., Saitoh, M., et al., Details of Retropositional Genome Dynamics That Provide Rationale for a Generic Division: The Distinct Branching of All the Pacific Salmon and Trout (Oncorhynchus) from the Atlantic Salmon and Trout (Salmo), Genetics, 1996, vol. 142, no. 3, pp. 915-926.
16. Makhrov, A.A., Atlantic Salmon (Salmo salar L.) and Brown Trout (Salmo trutta L.) Hybridization, J. Fish Biol., 2007 (submitted).
17. Reed, K.M., Hackett, J.D., and Phillips, R.B., Comparative Analysis of Intra-Individual and Inter-Species DNA Sequence Variation in Salmonid Ribosomal DNA Cistrons, Gene, 2000, vol. 249, pp. 115-125.
18. Presa, P., Pardo, B.G., Martinez, P., and Bernatchez, L., Phylogeographic Congruence between mtDNA and rDNA ITS Markers in Brown Trout, Mol. Biol. Evol., 2002, vol. 19, no. 12, pp. 2161-2175.
19. Antunes, A., Templeton, A.R., Guyomard, R., and Alexandrino, P., The Role of Nuclear Genes in Intraspecific Evolutionary Inference: Genealogy of the Transferrin Gene in the Brown Trout, Mol. Biol. Evol., 2002, vol. 19, no. 8, pp. 1272-1287.
20. Langefors, A., Lohm, J., Grahn, M., et al., Association Between Major Histocompatibility Complex Class IIB Alleles and Resistance to Aeromonas salmonicida in Atlantic Salmon, Proc. R. Soc. Lond. B, 2001, vol. 268, pp. 479-485.
21. Lohm, J., Grahn, M., Langefors, A., et al., Experimental Evidence for Major Histocompatibility Complex-Allele - Specific Resistance to a Bacterial Infection, Proc. R. Soc. Land. Ser. B., 2002, vol. 269, pp. 2029-2033.
22. Grimholt, U., Larsen, S., Nordmo, R., et al., MHC Polymorphism and Disease Resistance in Atlantic Salmon (Salmo salar): Facing Pathogens with Single Expressed Major Histocompatibility Class I and Class II Loci, Immunogenetics, 2003, vol. 55, pp. 210-219.
23. Miller, K.M., Winton, J.R., Schulze, A.D., et al., Major Histocompatibility Complex Loci Are Associated with Susceptibility of Atlantic Salmon to Infectious Hematopoietic Necrosis Virus, Environ. Biol. Fishes, 2004, vol. 69, pp. 307-316.
24. Landry, C. and Bernatchez, L., Comparative Analysis of Population Structure across Environments and Geographical Scales at Major Histocompatibility Complex and Microsatellite Loci in Atlantic Salmon (Salmo salar L.), Mol. Ecol., 2001, vol. 10, pp. 2525-2539.
25. Consuegra, S., Megens, H.J., Leon, K., et al., Patterns of Variability at the Major Histocompatibility Class II Alpha Locus in Atlantic Salmon Contrast with Those at the Class I Locus, Immunogenetics, 2005, vol. 57, pp. 16-24.
26. Consuegra, S., Megens, H.-J., Schaschl, H., et al., Rapid Evolution of the MH Class I Locus Results in Different Allelic Composition in Recently Diverged Populations of Atlantic Salmon, Mol. Biol. Evol., 2005, vol. 22, no. 4, pp. 1095-1106.
27. Langefors, A.H., Adaptive and Neutral Genetic Variation and Colonization History of Atlantic Salmon, Salmo salar, Environ. Biol. Fishes, 2005, vol. 74, pp. 297-308.
28. Landry, C., Garant, D., Duchesne, P., and Bernatchez, L., "Good Genes As Heterozygosity": The Major Histocompatibility Complex and Mate Choice in Atlantic Salmon (Salmo salar L.), Proc. R. Soc. Lond. Ser. B., 2001, vol. 268, pp. 1279-1285.
29. Rayakaruna, H.J., Brown, J.A., Kaukinen, K.H., and Miller, K.M., Major Histocompatibility Complex and Kin Discrimination in Atlantic Salmon and Brook Trout, Mol. Ecol., 2006, vol. 15, no. 14, pp. 4569-4575.
30. Ryynanen, H.J. and Primmer, C.R., Distribution of Genetic Variation in the Growth Hormone 1 Gene in Atlantic Salmon (Salmo salar) Populations from Europe and North America, Mol. Ecol., 2004, vol. 13, pp. 3857-3869.
31. Gross, R. and Nilsson, J., Restriction Fragment Length Polymorphism at the Growth Hormone 1 Gene in Atlantic Salmon (Salmo salar L.) and Its Association with Weight among the Offspring of a Hatchery Stock, Aquaculture, 1999, vol. 173, pp. 73-80.
32. Gross, R., Nilsson, J., Kohlmann, K., et al., Distribution of Growth Hormone 1 Gene Haplotypes among Atlantic Salmon, Salmo salar L. Populations in Europe, in Atlantic Salmon: Biology, Conservation and Restoration, Petrozavodsk: Inst. Biol. Rus. Acad. Sci., 2003, pp. 32-37.
33. Culter, M.G., Bartlett, S.E., Hartley, S.E., and Davidson, W.S., A Polymorphism in the Ribosomal RNA Genes Distinguishes Atlantic Salmon (Salmo salar) from North America and Europe, Can. J. Fish. Aquat. Sci., 1991, vol. 48, pp. 1655-1661.
34. Taggart, J.B., Verspoor, E., Galvin, P.T., et al., A Minisatellite DNA Marker for Discriminating between European and North American Atlantic Salmon (Salmo salar), Can. J. Fish. Aquat. Sci., 1995, vol. 52, no. 11, pp. 2305-2311.
35. Mjolnerod, LB., Refseth, U.H., Karlsen, E., et al., Genetic Differences between Two Wild and One Farmed Population of Atlantic Salmon (Salmo salar) Revealed by Three Classes of Genetic Markers, Hereditas, 1997, vol. 127, no. 3, pp. 239-248.
36. Stone, C.E., Taggart, LB., and Ferguson, A., Single Locus Minisatellite DNA Variation in European Populations of Atlantic Salmon (Salmo salar L.), Hereditas, 1997, vol. 126, no. 3, pp. 269-275.
37. Galvin, P., McKinnell, S., Taggart, J.B., et al., Genetic Stock Identification of Atlantic Salmon Using Single Locus Minisatellite DNA Profiles, J. Fish Biol., 1995, vol. 47, suppl. A, pp. 186-199.
38. Galvin, P., Taggart, J., Ferguson, A., et al., Population Genetics of Atlantic Salmon (Salmo salar) in the River Shannon System in Ireland: An Appraisal Using Single Locus Minisatellite (VNTR) Probes, Can. J. Fish. Aquat. Sci., 1996, vol. 53, pp. 1933-1942.
39. Perez, J., Moran, P., Pendas, A.M., and Garcia-Vazquez, E., Applications of Single Locus Minisatellite DNA Probes to the Study of Atlantic Salmon (Salmo salar L.) Population Genetics, J. Hered., 1997, vol. 88, pp. 80-82.
40. Moran, P., Pendas, A.M., Beall, E., and Garcia-Vazquez, E., Genetic Assessment of the Reproductive Success of Atlantic Salmon Precocious Parr by Means of VNTR Loci, Heredity, 1996, vol. 77, pp. 655-660.
41. McGinnity, P., Stone, C., Taggart, J.B., et al., Genetic Impact of Escaped Farmed Atlantic Salmon (Salmo salar L.) on Native Populations: Use of DNA Profiling to Assess Freshwater Performance of Wild, Farmed, and Hybrid Progeny in a Natural River Environment, ICES J. Marine Sci., 1997, vol. 54, pp. 998-1008.
42. Thomas, D., Beall, E., and Burke, T., Alternative Reproductive Tactics in Atlantic Salmon: Factors Affecting Mature Parr Success, Proc. R. Soc. Lond. B, 1997, vol. 264, pp. 219-226.
43. Moran, P. and Garcia-Vazquez, E., Multiple Paternity in Atlantic Salmon: A Way to Maintain Genetic Variability in Relicted Populations, J. Heredity, 1998, vol. 89, pp. 551-553.
44. Thompson, C.E., Poole, W.R., Matthews, M.A., and Ferguson, A., Comparison, Using Minisatellite DNA Profiling, of Secondary Male Contribution in the Fertilization of Wild and Ranched Atlantic Salmon (Salmo salar) Ova, Can. J. Fish. Aquat. Sci., 1998, vol. 55, no. 9, pp. 2011-2018.
45. Mjolnerod, LB., Fleming, I.A., Refseth, U.H., and Hindar, K., Mate and Sperm Competition During Multiple-Male Spawnings of Atlantic Salmon, Can. J. Zool., 1998, vol. 76, pp. 70-75.
46. Mjolnerod, LB., Refseth, U.K., and Hindar, K., Spatial Association of Genetically Similar Atlantic Salmon Juveniles and Sex Bias in Spatial Patterns in a River, J. Fish Biol., 1999, vol. 55, pp. 1-8.
47. Martinez, J.L., Moran, P., Perez, J., et al., Multiple Paternity Increases Effective Size of Southern Atlantic Salmon Populations, Mol. Ecol., 2000, vol. 9, pp. 293-298.
48. Taggart, J.B., McLaren, I.S., Hay, D.W., et al., Spawning Success in Atlantic Salmon (Salmo salar L.): A Long-Term DNA Profiling-Based Study Conducted in a Natural Stream, Mol. Ecol., 2001, vol. 10, no. 4, pp. 1047-1060.
49. Webb, J.H., Fryer, R.J., Taggart, J.B., et al., Dispersion of Atlantic Salmon (Salmo salar) Fry from Competing Families as Revealed by DNA Profiling, Can. J. Fish. Aquat. Sci., 2001, vol. 58, no. 12, pp. 2386-2395.
50. Vasemagi, A., Gross, R., Paaver, T., et al., Analysis of Gene-Associated Tandem Repeat Markers in Atlantic Salmon (Salmo salar L.) Populations: Implications for Restoration and Conservation in the Baltic Sea, Conserv. Genet., 2005, vol. 6, pp. 385-397.
51. Vasemagi, A., Nilsson, J., and Primmer, C.R., Expressed Sequence Tag-Linked Microsatellites as a Source of Gene-Associated Polymorphisms for Detecting Signatures of Divergent Selection in Atlantic Salmon (Salmo salar L.), Mol. Biol. Evol., 2005, vol. 22, no. 4, pp. 1067-1076.
52. n Repetitive Sequences from Atlantic Salmon, Salmo salar L., Animal Genetics, 1993, vol. 24 no. 3, pp. 195-197.
53. Slettan, A., Olsaker, I., and Lie, O., Segregation Studies and Linkage Analysis of Atlantic Salmon Microsatellites Using Haploid Genetics, Heredity, 1997, vol. 78, pp. 620-627.
54. Skaala, O., Hoyheim, B., Glover, K., and Dahle, G., Microsatellite Analysis in Domesticated and Wild Atlantic Salmon (Salmo salar L.): Allelic Diversity and Identification of Individuals, Aquaculture, 2004, vol. 240, pp. 131-143.
55. McConnell, S., Hamilton, L., Morris, D., et al., Isolation of Salmonid Microsatellite Loci and Their Application to the Population Genetics of Canadian East Coast Stocks of Atlantic Salmon, AquacuIture, 1995, vol. 137, pp. 19-30.
56. O'Reilly, P.T., Hamilton, L.C., McConnell, S.K., and Wright, J.M., Rapid Analysis of Genetic Variation in Atlantic Salmon (Salmo salar) by PCR Multiplexing of Dinucleotide and Tetranucleotide Microsatellites, Can. J. Fish. Aquat. Sci., 1996, vol. 53, pp. 2292-2298.
57. Cairney, M., Taggart, J.B., and Hoyheim, B., Characterization of Microsatellite and Minisatellite Loci in Atlantic Salmon (Salmo salar L.) and Cross-Species Amplification in Other Salmonids, Mot. Ecol., 2000, vol. 9, pp. 2155-2234.
58. Paterson, S., Piertney, S.B., Knox, D., et al., Characterization and PCR Multiplexing of Novel Highly Variable Tetranucleotide Atlantic Salmon (Salmo salar L.) Microsatellites, Mol. Ecol. Notes, 2004, vol. 4, pp. 160-162.
59. Rengmark, A.H., Sletten, A., Skaala, O., et al., Genetic Variability in Wild and Farmed Atlantic Salmon (Salmo salar) Strains Estimated by SNP and Microsatellites, Aquaculture, 2006, vol. 253, nos. 1-4, pp. 229-237.
60. Sanchez, J.A., Clabby, C., Ramos, D., et al., Protein and Microsatellite Single Locus Variability in Salmo salar L. (Atlantic Salmon), Heredity, 1996, vol. 7, pp. 423-432.
61. Slettan, A., Olsaker, I., and Lie, O., Polymorphic Atlantic Salmon, Salmo salar L. Microsatellites at the SSOSL438, SSOSL439 and SSOSL444 loci, Anim. Genet., 1996, vol. 27, pp. 57-58.
62. Vasemagi, A., Nillson, J., and Primmer, C.R., Seventy-Five EST-Linked Atlantic Salmon (Salmo salar L.) Microsatellite Markers and Their Cross-Amplification in Five Salmonid Species, Mol. Ecol. Notes, 2005, vol. 5, pp. 282-288.
63. Garant, D., Dodson, J.J., and Bernatchez, L., Ecological Determinants and Temporal Stability of the Within-River Population Structure in Atlantic Salmon (Salmo salar L.), Mol. Ecol., 2000, vol. 9, pp. 615-628.
64. Ng, S.H.S., Chang, A., Brown, G.B., et al., Type I Microsatellite Markers from Atlantic Salmon (Salmo salar) Expressed Sequence Tags, Mol. Ecol. Notes, 2005, vol. 5, pp. 762-766.
65. Fontaine, P.-M., Dodson, J.J., Bernatchez, L., and Slettan, A., A Genetic Test of Metapopulation Structure in Atlantic Salmon (Salmo salar) Using Microsatellites, Can. J. Fish. Aquat. Sci., 1997, vol. 54, pp. 2434-2442.
66. McConnell, S.K.J., Ruzzante, D.E., O'Reilly, P.T., et al., Microsatellite Loci Reveal Highly Significant Genetic Differentiation Among Atlantic Salmon (Salmo salar L.) from the East Coast of Canada, Mol. Ecol., 1997, vol. 6, pp. 1075-1089.
67. Spidle, A.P., Schill, W.B., Lubinski, B.A., and King, T.L., Fine-Scale Population Structure in Atlantic Salmon from Maine's Penobscot River Drainage, Conserv. Genet., 2001, vol. 2, pp. 11-24.
68. Spidle, A.P., Kalinowski, S.T., Lubinski, B.A., et al., Population Structure of Atlantic Salmon in Maine with Reference to Populations from Atlantic Canada, Trans. Am. Fish. Soc., 2003, vol. 132, pp. 196-209.
69. Nilsson, J., mtDNA and Microsatellite Variation in Baltic Atlantic Salmon, ICES J. Marine Sci., 1997, vol. 54, no. 6, pp. 1173-1176.
70. Nielsen, E.E., Hansen, M.M., and Loeschcke, V., Genetic Variation in Time and Space: Microsatellite Analysis of Extinct and Extant Populations of Atlantic Salmon, Evolution, 1999, vol. 53, no. 1, pp. 261-268.
71. Wennevik, V., Skaala, O., Titov, S.F., et al., Microsatellite Variation in Populations of Atlantic Salmon from North Europe, Environ. Biol. Fishes, 2004, vol. 69, pp. 143-152.
72. Consuegra, S., Verspoor, E., Knox, D., and Garcia de Leaniz, C., Asymmetric Gene Flow and the Evolutionary Maintenance of Genetic Diversity in Small, Peripheral Atlantic Salmon Populations, Conserv. Genet., 2005, vol. 6, pp. 823-842.
73. Ayllon, F., Martinez, J.L., and Garcia-Vazquez, E., Loss of Regional Population Structure in Atlantic Salmon, Salmo salar L. Following Stocking, ICES J. Marine Sci., 2006, vol. 63, no. 7, 1269-1273.
74. Tessier, N. and Bernatchez, L., Stability of Population Structure and Genetic Diversity across Generations Assessed by Microsatellites among Sympatric Populations of Landlocked Atlantic Salmon (Salmo salar L.), Mol. Ecol., 1999, vol. 8, pp. 169-179.
75. Vasemagi, A., Gross, R., Paaver, T., et al., Identification of the Origin of Atlantic Salmon (Salmo salar L.) Population in a Recently Recolonized River in the Baltic Sea, Mol. Ecol., 2001, vol. 10, pp. 2877-2882.
76. Tessier, N., Bernatchez, L., Presa, P., and Angers, B., Gene Diversity Analysis of Mitochondrial DNA, Microsatellites and Allozymes in Landlocked Atlantic Salmon, J. Fish Biol., 1995, vol. 47, pp. 156-163.
77. Tessier, N., Bernatchez, L., and Wright, J.W., Population Structure and Impact of Supportive Breeding Inferred from Mitochondrial and Microsatellite DNA Analyses in Land-Locked Atlantic Salmon Salmo salar L., Mol. Ecol., 1997, vol. 6, pp. 735-750.
78. Beacham, T.D. and Dempson, J.B., Population Structure of Atlantic Salmon from the Conne River, Newfoundland as Determined from Microsatellite DNA, J. Fish Biol., 1998, vol. 52, pp. 665-676.
79. Martinez, J.L., Gephard, S., Juanes, F., and Garcia-Vazquez, E., The Use of Microsatellite Loci for Genetic Monitoring of Atlantic Salmon Populations, North Am. J. Aquacult., 2000, vol. 62, pp. 285-289.
80. Potvin, C. and Bernatchez, L., Lacustrine Spatial Distribution of Landlocked Atlantic Salmon Populations Assessed across Generations by Multilocus Individual Assignment and Mixed-Stock Analyses, Mol. Ecol., 2001, vol. 10, pp. 2375-2388.
81. Primmer, C.R., Veselov, A.J., Zubchenko, A., et al., Isolation by Distance within a River System: Genetic Population Structuring of Atlantic Salmon, Salmo salar, in Tributaries of the Varzuga River in Northwest Russia, Mol. Ecol., 2006, vol. 15, pp. 653-666.
82. Skaala, O., Wennevik, V., and Glover, K.A., Evidence of Temporal Genetic Change in Wild Atlantic Salmon, Salmo salar L. Populations Affected by Farm Escapes, ICES J. Marine. Sci., 2006, vol. 63, no.7, pp. 1224-1233.
83. Ayllon, F., Martinez, J.L., Juanes, F., et al., Genetic History of the Population of Atlantic Salmon, Salmo salar L. under Restoration in the Connecticut River, USA, ICES J. Marine Sci., 2006, vol. 63, no.7, pp. 1286-1289.
84. Nielsen, E.E., Hansen, M.M., and Loeschcke, V., Analysis of Microsatellite DNA from Old Scale Samples of Atlantic Salmon Salmo salar. A Comparison of Genetic Composition over 60 Years, Mol. Ecol., 1997, vol. 6, pp. 487-492.
85. Nielsen, E.E., Hansen, M.M., and Bach, L.A., Looking for a Needle in a Haystack: Discovery of Indigenous Atlantic Salmon (Salmo salar L.) in Stocked Populations, Conserv. Genet., 2001, vol. 2, pp. 219-232.
86. Martinez, J.L., Dumas, J., Beall, E., and Garcia-Vazquez, E., Assessing Introgression of Foreign Strains in Wild Atlantic Salmon Populations: Variation in Microsatellites Assessed in Historic Scale Collections, Freshwater Biol., 2001, vol. 46, pp. 835-844.
87. Saisa, M., Koljonen, M.-L., and Tahtinen, J., Genetic Changes in Atlantic Salmon Stocks since Historical Times and the Effective Population Size of a Long-Term Captive Breeding Programme, Conserv. Genet.,2003, vol. 4, pp. 613-627.
88. Lage, C. and Kornfield, I., Reduced Genetic Diversity and Effective Population Size in an Endangered Atlantic Salmon (Salmo salar) Population from Maine, USA, Conserv. Genet., 2006, vol. 7, pp. 91-104.
89. Saura, M., Caballero, P., Caballero, A., and Moran, P., Genetic Variation in Restored Atlantic Salmon (Salmo salar L.) Populations in the Ulla and Lerez Rivers, Galicia, Spain, ICES J. Marine Sci., 2006, vol. 63, no. 7, pp. 1290-1296.
90. Frazer, D.J., Jones, M.W., McParland, T.L., et al., Loss of Historical Immigration and the Unsuccessful Rehabilitation of Extirpated Salmon Populations, Conserv. Genet., 2007 (in press).
91. Norris, A.T., Bradley, D.G., and Cunningham, E.P., Parentage and Relatedness Determination in Farmed Atlantic Salmon (Salmo salar) Using Microsatellite Markers, Aquaculture, 2000, vol. 182, pp. 73-83.
92. McGinnity, P., Prodohl, P., Maoileidigh, N.O., et al., Differential Lifetime Success and Performance of Native and Non-Native Atlantic Salmon Examined Under Communal Natural Conditions, J. Fish Biol., 2004, vol. 65, suppl. A, pp. 173-187.
93. Koljonen, M.-L., Pella, J.J., and Masuda, M., Classical Individual Assignments versus Mixture Modelling to Estimate Stock Proportions in Atlantic Salmon (Salmo salar) Catches from DNA Microsatellite Data, Can. J. Fish. Aquat. Sci., 2005, vol. 62, no. 9, pp. 2143-2158.
94. Tonteri, A., Titov, S., Veselov, A., et al., Phylogeography of Anadromous and Non-Anadromous Atlantic Salmon (Salmo salar) from Northern Europe, Ann. Zool. Fennici, 2005, vol. 42, pp. 1-22.
95. Clifford, S.L., McGinnity, P., and Ferguson, A., Genetic Changes in an Atlantic Salmon Population Resulting from Escaped Juvenile Farm Salmon, J. Fish Biol., 1998, vol. 52, pp. 118-127.
96. Clifford, S.L., McGinnity, P., and Ferguson, A., Genetic Changes in Atlantic Salmon (Salmo salar) Populations of Northwest Irish Rivers Resulting from Escapes of Adult Farm Salmon, Can. J. Fish. Aquat. Sci., 1998, vol. 55, pp. 358-363.
97. Norris, A.T., Bradley, D.G., and Cunningham, E.P., Microsatellite Genetic Variation between and within Farmed and Wild Atlantic Salmon (Salmo salar) Populations, Aquaculture, 1999, vol. 180, pp. 247-264.
98. McGinnity, P., Prodohl, P., Ferguson, A., et al., Fitness Reduction and Potential Extinction of Wild Populations of Atlantic Salmon, Salmo salar, as a Result of Interactions with Escaped Farm Salmon, Proc. R. Soc. Lond. B, 2003, vol. 270, pp. 2443-2450.
99. Withler, R.E., Supernault, K.J., and Miller, K.M., Genetic Variation within and among Domesticated Atlantic Salmon Broodstocks in British Columbia, Canada, Anim. Genet., 2005, vol. 36, pp. 43-50.
100. O'Reilly, P.T., Carr, J.W., Whoriskey, F.G., and Verspoor, E., Detection of European Ancestry in Escaped Farmed Atlantic Salmon, Salmo salar L. in the Magaguadavic River and Chamcook Stream, New Brunswick, Canada, ICES J. Marine Sci., 2006, vol. 63, no.7, pp.1256-1262.
101. Koljonen, M.-L., Annual Changes in the Proportions of Wild and Hatchery Atlantic Salmon (Salmo salar) Caught in the Baltic Sea, ICES J. Marine. Sci, 2006, vol. 63, no. 7, pp. 1274-1285.
102. Reilly, A., Elliott, N.G., Grewe, P.M., et al., Genetic Differentiation Between Tasmanian Cultured Atlantic Salmon (Salmo salar L.) and Their Ancestral Canadian Population: Comparison of Microsatellite DNA and Allozyme and Mitochondrial DNA Variation, Aquaculture, 1999, vol. 173, pp. 459-469.
103. Jones, M.W. and Hutchings, J.A., The Influence of Male Parr Body Size and Mate Competition on Fertilization Success and Effective Population Size in Atlantic Salmon, Heredity, 2001, vol. 86, pp. 675-684.
104. Garant, D., Dodson, J.J., and Bernatchez, L., Differential Reproductive Success and Heritability of Alternative Reproductive Tactics in Wild Atlantic Salmon (Salmo salar L.), Evolution, 2003, vol. 57, no. 5, pp. 1133-1141.
105. Tiira, K., Laurila, A., Peuhkuri, N., et al., Aggressiveness Is Associated with Genetic Diversity in Land-locked Salmon (Salmo salar), Mol. Ecol., 2003, vol. 12, pp. 2399-2407.
106. Weir, L., Hutchings, J.A., Fleming, I.A., and Einum, S., Spawning Behaviour and Success of Mature Male Atlantic Salmon (Salmo salar) Parr of Farmed and Wild Origin, Can. J. Fish. Aquat. Sci., 2005, vol. 62, pp. 1153-1160.
107. Herbinger, C.M., O'Reilly, P.T., and Verspoor, E., Unravelling First-Generation Pedigrees in Wild Endangered Salmon Populations Using Molecular Genetic Markers, Mol. Ecol., 2006, vol. 15, pp. 2261-2275.
108. Fontaine, P.-M. and Dodson, J.J., An Analysis of the Distribution of Juvenile Atlantic Salmon (Salmo salar) in Nature as a Function of Relatedness Using Microsatellites, Mol. Ecol., 1999, vol. 8, pp. 189-198.
109. Primmer, C.R., Koskinen, M.T., and Piironen, J., The One That Did not Get Away: Individual Assignment Using Microsatellite Data Detects a Case of Fishing Competition Fraud, Proc. R. Soc. Lond. Ser. B, 2000, vol. 267, pp. 1699-1704.
110. Letcher, B.H. and King, T.L., Parentage and Grandparentage Assignment with Known and Unknown Mating: Application to Connecticut River Atlantic Salmon Restoration, Can. J. Fish. Aquat. Sci., 2001, vol. 58, no. 9, pp. 1812-1821.
111. Garant, D., Dodson, J.J., and Bernatchez, L., A Genetic Evaluation of Mating System and Determinants of Individual Reproductive Success in Atlantic Salmon (Salmo salar L.), J. Heredity, 2001, vol. 92, no. 2, pp. 137-145.
112. Garant, D., Fontaine, P.-M., Good, S.P., et al., The Influence of Male Parental Identity on Growth and Survival of Offspring in Atlantic Salmon (Salmo salar), Evol. Ecol. Res., 2002, vol. 4, pp. 537-549.
113. Garant, D., Fleming, I.A., Einum, S., and Bernatchez, L., Alternative Male Life-History Tactics as Potential Vehicles for Speeding Introgression of Farm Salmon Traits Into Wild Populations, Ecol. Letts., 2003, vol. 6, pp. 541-549.
114. Jones, M.W. and Hutchings, J.A., Individual Variation in Atlantic Salmon Fertilization Success: Implications for Effective Population Size, Ecol. Appl. 2002, vol. 12, issue 1, pp. 184-193.
115. Carr, J.W., Whoriskey, F., and O'Reilly, P., Efficacy of Releasing Captive Reared Broodstock Into an Imperilled Wild Atlantic Salmon Population as a Recovery Strategy, J. Fish Biol., 2004, vol. 65, Suppl. A, pp. 38-54.
116. Tessier, N. and Bernatchez, L., A Genetic Assessment of Single Versus Double Origin of Landlocked Atlantic Salmon (Salmo salar) from Lake Saint-Jean, Quebec, Canada, Can. J. Fish. Aquat. Sci., 2000, vol. 57, no. 4, pp. 797-804.
117. Saisa, M., Koljonen, M.-L., Gross, R., et al., Population Genetic Structure and Postglacial Colonization of Atlantic Salmon (Salmo salar) in the Baltic Sea Area Based on Microsatellite DNA Variation, Can. J. Fish. Aquat. Sci., 2005, vol. 62, pp. 1887-1904.
118. King, T.L., Kalinowski, S.T., Schill, W.B., et al., Population Structure of Atlantic Salmon (Salmo salar L.): A Range-Wide Perspective from Microsatellite DNA Variation, Mol. Ecol., 2001, vol. 10, no. 4, pp. 807-821.
119. King, T.L., Eackles, M.S., and Letcher, B.H., Microsatellite DNA Markers for the Study of Atlantic Salmon (Salmo salar) Kinship, Population Structure, and Mixed-Fishery Analyses, Mol. Ecol. Notes, 2005, vol. 5, pp. 130-132.
120. Gilbey, J., Knox, D., O'Sullivan, M., and Verspoor, E., Novel DNA Markers for Rapid, Accurate, and Cost-Effective Discrimination of the Continental Origin of Atlantic Salmon (Salmo salar L.), ICES J. Marine Sci., 2005, vol. 62, no. 8, pp. 1609-1616.
121. Koljonen, M.-L., Tahtinen, J., Saisa, M., and Koskiniemi, J., Maintenance of Genetic Diversity of Atlantic Salmon (Salmo salar) by Captive Breeding Programs and the Geographic Distribution of Microsatellite Variation, Aquaculture, 2002, vol. 212, pp. 69-92.
122. O'Reilly, P.T., Herbinger, C., and Wright, J.M., Analysis of Parentage Determination in Atlantic Salmon (Salmo salar) Using Microsatellites, Anim. Genet., 1998, vol. 29, pp. 363-370.
123. Antunes, A., Gharbi, K., Alexandrino, P., and Guyomard, R., Characterization of Transferrin-Linked Microsatellites in Brown Trout (Salmo trutta) and Atlantic Salmon (Salmo salar), Mol. Ecol. Notes, 2006, vol. 6, no. 2, pp. 547-549.
124. Li, Y.-C., Korol, A.B., Fahima, T., and Nevo, E., Microsatellites within Genes: Structure, Function, and Evolution, Mol. Biol. Evol., 2004, vol. 21, no. 6, pp. 991-1007.
125. Garant, D., Dodson, J.J., and Bernatchez, L., Offspring Genetic Diversity Increases Fitness of Female Atlantic Salmon (Salmo salar), Behav. Ecol. Sociobiol., 2005, vol. 57, pp. 240-244.
126. Borrell, Y.J., Pineda, H., McCarthy, I., et al., Correlation between Fitness and Heterozygosity at Allozyme and Microsatellite Loci in the Atlantic Salmon, Salmo salar, Heredity, 2004, vol. 92, no. 6, pp. 585-593.
127. Primmer, C.R., Landry, P.-A., Ranta, E., et al., Prediction of Offspring Fitness Based on Parental Genetic Diversity in Endangered Salmonid Populations, J. Fish Biol., 2003, vol. 63, pp. 909-927.
128. Pineda, H., Borrell, Y.J., McCarthy, I., et al., Timing of First Feeding and Life History Strategies in Salmon: Genetic Data, Hereditas, 2003, vol. 139, pp. 41-48.
129. Landegren, U., Kaiser, R., Sanders, J., and Hood, L., A Ligase-Mediated Gene Detection Technique, Science, 1988, vol. 241, no. 4869, pp. 1077-1080.
130. Avise, J.C., Molecular Markers, Natural History and Evolution, 2nd ed., Sunderland: Sinauer, 2004.
131. Hurst, C.D., Bartlett, S.E., Davidson, W.S., and Bruce, I.J., The Complete Mitochondrial DNA Sequence of the Atlantic Salmon, Salmo salar, Gene, 1999, vol. 239, pp. 237-242.
132. Hovey, S.L., King, D.P.F., Thompson, D., and Scott, A., Mitochondrial DNA and Allozyme Analysis of Atlantic Salmon, Salmo salar L. in England and Wales, J. Fish Biol., 1989, vol. 35, pp. 253-260.
133. Palva, T.K., Lehvaslaiho, H., and Palva, E.T., Identification of Anadromous and Non-Anadromous Salmon Stocks in Finland by Mitochondrial DNA Analysis, Aquaculture, 1989, vol. 81, nos. 3-4, pp. 237-244.
134. Knox, D. and Verspoor, E., A Mitochondrial DNA Restriction Fragment Length Polymorphism of Potential Use for Discrimination of Farmed Norwegian and Wild Atlantic Salmon Populations in Scotland, Aquaculture, 1991, vol. 98, nos. 1-3, pp. 249-257.
135. Bermingham, E., Forbes, S.H., Friedland, K., and Pla, C., Discrimination between Atlantic Salmon (Salmo salar) of North American and European Origin Using Restriction Analyses of Mitochondrial DNA, Can. J. Fish. Aquat. Sci., 1991, vol. 48, pp. 884-893.
136. Birt, T.P., Green, J.M., and Davidson, W.S., Mitochondrial DNA Variation Reveals Genetically Distinct Sympatric Population of Anadromous and Nonanadromous Atlantic Salmon, Salmo salar, Can. J. Fish. Aquat. Sci., 1991, vol. 48, pp. 577-582.
137. King, D.P.F., Hovey, S.L., Thompson, D., and Scott, A., Mitochondrial DNA Variation in Atlantic Salmon, Salmo salar L. Populations, J. Fish Biol., 1993, vol. 42, pp. 25-33.
138. Birt, T.P., Green, J.M., and Davidson, W.S., Analysis of Mitochondrial DNA in Allopatric Anadromous and Nonanadromous Atlantic Salmon, Salmo salar, Can. J. Zool., 1986, vol. 64, no. 1, pp. 118-120.
139. Gullensten, U. and Wilson, A.C., Mitochondrial DNA of Salmonids: Inter- and Intraspecific Variability Detected with Restriction Enzymes, in Population Genetics and Fishery Management, Ryman, N. and Utter, F., Eds., Seattle, Univ. Washington Press, 1987, pp. 301-317.
140. O'Connell, M., Skibinski, D.O.F., and Beardmore, J.A., Mitochondrial DNA and Allozyme Variation in Atlantic Salmon (Salmo salar) Populations in Wales, Can. J. Fisheries Aquat. Sci., 1995, vol. 52, no. 1, pp. 171-178.
141. O'Connell, M., Skibinski, D.O.F., and Beardmore, J.A., Allozyme and mtDNA Divergence between Atlantic Salmon Populations in North Wales, J. Fish Biol., 1996, vol. 48, no. 5, pp. 1023-1026.
142. Nielsen, E.E., Hansen, M.M., and Loeschcke, V., Genetic Structure of European Populations of Salmo salar L. (Atlantic Salmon) Inferred from Mitochondrial DNA, Heredity, 1996, vol. 77, pp. 351-358.
143. Verspoor, E., McCarthy, E.M., Knox, D., et al., The Phylogeography of European Atlantic Salmon (Salmo salar L.) based on RFLP analysis of the ND1/16sRNA region of the mtDNA, Biol. J. Linn. Soc., 1999, vol. 68, pp. 129-146.
144. King, T.L., Spidle, A.P., Eackles, M.S., et al., Mitochondrial DNA Diversity in North American and European Atlantic Salmon with Emphasis on the Downcast Rivers of Maine, J. Fish Biol., 2000, vol. 57, pp. 614-630.
145. Nilsson, J., Gross, R., Asplund, T., et al., Matrilinear Phylogeography of Atlantic Salmon (Salmo salar L.) in Europe and Postglacial Colonization of the Baltic Sea Area, Mol. Ecol., 2001, vol. 10, pp. 89-102.
146. Verspoor, E., O'Sullivan, M., Arnold, A.L., et al., Restricted Matrilineal Gene Flow and Regional Differentiation Among Atlantic Salmon (Salmo salar L.) Populations within the Bay of Fundy, Eastern Canada, Heredity, 2002, vol. 89, pp. 465-472.
147. McVeigh, H.P., Bartlett, S.E., and Davidson, W.S., Polymerase Chain Reaction/Direct Sequence Analysis of the Cytochrome B Gene in Salmo salar, Aquaculture, 1991, vol. 95, nos. 3-4, pp. 225-233.
148. Consuegra, S., Garcia De Leaniz C., Serdio A., et al., Mitochondrial DNA Variation in Pleistocene and Modern Atlantic Salmon from the Iberian Glacial Refugium, Mol. Ecol., 2002, vol. 11, pp. 2037-2048.
149. Knox, D., Lehmann, K., Reddin, D.G., and Verspoor, E., Genotyping of Archival Atlantic Salmon Scales from Northern Quebec and West Greenland Using Novel PCR Primers for Degraded mtDNA, J. Fish Biol., 2002, vol. 60, pp. 266-270.
150. Asplund, T., Veselov, A., Primmer, C.R., et al., Geographical Structure and Postglacial History of mtDNA Haplotype Variation in Atlantic Salmon (Salmo salar L.) among Rivers of the White and Barents Sea Basins, Ann. Zool. Fen., 2004, vol. 41, no. 3, pp. 465-475.
151. Makhrpv, A.A., Verspoor, E., Artamonova, V.S., and O'Sullivan, M., Atlantic Salmon Colonization of the Russian Arctic Coast: Pioneers from North America, J. Fish Biol., 2005, vol. 67, suppl. A, pp. 68-79.
152. Makhrov, A.A. and Bolotov, I.N., Dispersal Routes and Species Identification of Freshwater Animals in Northern Europe: A Review of Molecular Evidence, Russ. J. Genet., 2006, vol. 42, no. 10, pp. 1101-1115.
153. Consuegra, S., Garcia de Leaniz, C., Serdio A., and Verspoor E., Selective Exploitation of Early Running Fish May Induce Genetic and Phenotypic Changes in Atlantic Salmon, J. Fish. Biol., 2005, vol. 67, suppl. A, pp. 129-145.
154. Khaimina, O.V., Makhrov, A.A., Shirokov, V.A., et al., Changes of Genetic Structure of Atlantic Salmon Salmo salar Linnaeus, 1758 Population in the Keret' River (Beloe Sea) as a Result of Parasite Gyrodactylus salaries Malmberg Invasion, in Chuzherodnye vidy v Golarktike (Borok-2) (Alien Species in Holarctics (Borok-2)), Proc. 2nd Int. Symp. on Invasive Species, Borok, Yaroslavskaya Oblast', Russia, Sept. 27-Oct. 1, 2005, pp. 179-180.