The role of nuclear genes in intraspecific evolutionary inference: Genealogy of the transferrin gene in the brown trout

Molecular Biology and Evolution

Volumn 19, Issue 8, 2002, Pages 1272-1287

  Antunes, Agostinho ^a,b,c,e   Templeton, Alan R ^d   Guyomard, René ^b,c   Alexandrino, Paulo ^a,b,c  

^a CENTRO DE INVESTIGAÇÃO EM BIODIVERSIDADE E RECURSOS GENÉTICOS   (Portugal)

^b UNIVERSITY OF PORTO   (Portugal)

^c CEMAGREF   (France)

^d WASHINGTON UNIVERSITY   (United States)

^e NATIONAL CANCER INSTITUTE   (United States)

Author keywords

Brown trout; Gene conversion; Nuclear genealogy; Recombination; Salmo trutta; Salmonids; Transferrin

Indexed keywords

ALLOENZYME; MITOCHONDRIAL DNA; TRANSFERRIN; DNA; ISOPROTEIN;

ARTICLE; GENE CONVERSION; GENE DISRUPTION; GENE STRUCTURE; GENEALOGY; HAPLOTYPE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; UNINDEXED SEQUENCE; AMINO ACID SEQUENCE; ANIMAL; CLASSIFICATION; DNA SEQUENCE; EUROPE; EVOLUTION; GENETIC RECOMBINATION; GENETICS; MOLECULAR GENETICS; PHYLOGENY; POPULATION GENETICS; SEQUENCE ALIGNMENT; TROUT;

SALMO; SALMO TRUTTA; SALMONIDAE;

AMINO ACID SEQUENCE; ANIMALS; DNA; EUROPE; EVOLUTION; GENETICS, POPULATION; HAPLOTYPES; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN ISOFORMS; RECOMBINATION, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TRANSFERRIN; TROUT;

EID: 0036667688     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a004188     Document Type: Article

References (79)

1. Genetic characterization of Portuguese brown trout (Salmo trutta L.) and comparison with other European populations
2. Complex evolutionary history in the brown trout: Insights on the recognition of conservation units
3. Highly polymorphic plasma protein locus in brown trout Salmo trutta (L.) populations from Portugal
4. Genetic and phylogenetic relationships among Salmo trutta L. (brown trout) populations from Greece and other European countries
5. Mitochondrial DNA sequence variation and phylogeography among Salmo trutta L. (Greek brown trout) populations
6. The history and purview of phylogeography: A personal reflection
7. Phylogenetics and the origin of species
8. What does electrophoretic variation tell us about protein variation?
9. The systematics of salmonid fishes of recently glaciated lakes
10. Brown trout
11. The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation
12. DNA sequence variation of the mitochondrial control region among geographically and morphological remote European brown trout (Salmo trutta) populations
13. Genetic diversity of trout (genus Salmo) from its most eastern native range based on mitochondrial DNA and nuclear gene variation
14. The genetic diversity of native, stocked and hybrid populations of marbled trout in the Soca river, Slovenia
15. Organelle gene diversity under migration, mutation, and drift: Equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells, and comparison to nuclear genes
16. Genetic structure of brown trout, Salmo trutta L., at the southern limit of the distribution range of the anadromous form
17. Allozymic evidence of parapatric differentiation of brown trout (Salmo trutta L.) within an Atlantic river basin of the Iberian Peninsula
18. Inference of haplotypes from PCR-amplification samples of diploid populations
19. TCS: A computer program to estimate gene genealogies
20. Intraspecific cladogram estimation: Accuracy at higher levels of divergence
21. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
22. Applications of intraspecific phylogenetics
23. Statistical approach to detecting recombination
24. Effects of natural selection on patterns of DNA sequence variation at the transferrin, somatolactin, and p53 genes within and among chinook salmon (Oncorhynchus tshawytscha) populations
25. Molecular evolution of transferrin: Evidence for positive selection in salmonids
26. Natural selection promotes divergence of transferrin among salmonid species
27. Postglacial colonization of brown trout in Europe based on distribution of allozyme variants
28. Mitochondrial control region and protein coding genes sequence variation among phenotypic forms of brown trout Salmo trutta from northern Italy
29. Phylogenetic relationships and introgression patterns between incipient parapatric species of Italian brown trout (Salmo trutta L. complex)
30. Diversité génétique de la truite commune
31. Population structure in the American oyster as inferred by nuclear gene genealogies
32. The genetic legacy of the Quaternary ice ages
33. Inferring phylogenies from mtDNA variation: Mitochondrial gene trees versus nuclear gene trees revisited
34. Genetic structure and differentiation among Greek brown trout (Salmo trutta L.) populations
35. Evolutionary rate at the molecular level
36. Population genetics of French brown trout (Salmo trutta L.): Large geographical differentiation of wild populations and high similarity of domesticated stocks
37. MEGA2: Molecular evolutionary genetics analysis software
38. Cloning and characterization of Atlantic Salmon (Salmo salar) serum transferrin cDNA
39. Effects of stocking on the genetic diversity of brown trout populations of the Adriatic and Danubian drainages in Switzerland
40. Cellulose acetate electrophoresis for screening transferrin polymorphism in brown trout (Salmo trutta L.) populations
41. Genetic introgression between native and introduced brown trout (Salmo trutta L.) populations in The Rhône River Basin
42. The role of natural and artificial propagation on the genetic diversity of brown trout (Salmo trutta L.) of the upper Rhône drainage
43. Molecular cloning and evolution of transferrin cDNAs in salmonids
44. Cloning and characterization of transferrin cDNA from coho salmon (Oncorhynchus kisutch)
45. Mitocondrial haplotype variation and phylogeography of Iberian brown trout populations
46. Structure of medaka transferrin gene and its 5′-flanking region
47. Atlantic and Danubean phylogenetic groupings of brown trout (Salmo trutta L.) complex: Genetic divergence, evolution, and conservation
48. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales
49. Transferrin variation in North American populations of the Atlantic salmon, Salmo salar
50. Diversité et gestion génétique de la truite commune: Apport de l'étude du polymorphisme des locus protéiques et microsatellites
51. The sensitivity of gel electrophoresis as a detector of genetic variation
52. Rare genomic changes as a tool for phylogenetics
53. Reproductive isolation with little genetic divergence in sympatric populations of brown trout (Salmo trutta)
54. Divergence of brown trout (Salmo trutta) within glacial refugia
55. Complete structure of the human transferrin gene. Comparison with analogous chicken gene and human pseudogene
56. Reduced levels of DNA polymorphism and fixed between-population differences in the centrometric region of Drosophila ananassae
57. A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism
58. Cloning and characterization of transferrin cDNA and rapid detection of transferrin gene polymorphism in rainbow trout (Oncorhynchus mykiss)
59. Contingency tests of neutrality using intra/interspecific gene trees: The rejection of neutrality for the evolution of the mitochondrial cytochrome oxidase II gene in the hominoid primates
60. Recombinational and mutational hotspots within the human lipoprotein lipase gene
61. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
62. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination
63. Cladistic structure within the human lipoprotein lipase gene and its implications for phenotypic association studies
64. Genetic structure of two Turkish brown trout populations
65. Transferrin polymorphism in coho salmon, Oncorhynchus mykiss, and its application to genetic stock identification
66. Mitochondrial haplotype diversity among Portuguese brown trout Salmo trutta L. populations: Relevance to the post-Pleistocene recolonization of northern Europe
67. Haplotype (mtDNA) diversity of brown trout Salmo trutta L. in tributaries of the Austrian Danube: Massive introgression of Atlantic basin fish-by man or nature?