Genetic variation within and among domesticated Atlantic salmon broodstocks in British Columbia, Canada

Animal Genetics

Volumn 36, Issue 1, 2005, Pages 43-50

  Withler, R E ^a   Supernault, K J ^a   Miller, K M ^a  

^a PACIFIC BIOLOGICAL STATION   (Canada)

Author keywords

Atlantic salmon; Domestication; Genetic diversity; Introgression

Indexed keywords

DNA; MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; ATLANTIC SALMON; CANADA; GENETIC VARIABILITY; GENETICS; GENOME; ISOLATION AND PURIFICATION;

ALLELES; ANIMALS; CANADA; DNA; GENOME; MICROSATELLITE REPEATS; SALMO SALAR; VARIATION (GENETICS);

GASPE; SALMO SALAR;

EID: 13844267342     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2004.01220.x     Document Type: Article

References (33)

1. British Columbia Environmental Assessment Office (1997) Salmon Aquaculture Review. Report of the Environmental Assessment Office, Volume 1. British Columbia Environmental Assessment Office, Victoria. British Columbia, 197 pp.
2. British Columbia Ministry of Management Services (2002) British Columbia's Fisheries and Aquaculture Sector. British Columbia Ministry of Management Services, Victoria, BC, 107 pp.
3. Cairney M., Taggart J.B. & Hoyheim B. (2000) Characterization of microsatellite and minisatellite loci in Atlantic salmon (Salmo salar L.) and cross-species amplification in other salmonids. Molecular Ecology 9, 2175-2178.
4. Cornuet J.M., Piry S., Luikart G., Estoup A. & Solignac M. (1999) Comparison of methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153, 1989-2000.
5. Fleming I.A., Hindar K., Mjølnerod I.B., Jonsson B., Balstad T. & Lamberg A. (2000) Lifetime success and interactions of farm salmon invading a native population. Proceedings of the Royal Society of London B 267, 1517-23.
6. Gjøen H.M. & Bentsen H.B. (1997) Past, present and future of genetic improvement in salmon aquaculture. ICES Journal of Marine Science 54, 1009-14.
7. Gjedrem T., Gjøen H.M. & Gjerde B. (1991) Genetic origin of Norwegian farmed Atlantic salmon. Aquaculture 98, 41-50.
8. Goudet J. (2001) FSTAT. a Program to Estimate and Test Gene Diversities and Fixation Indices. version 2.9.3. Available from http://www.unil.ch/izea/ softwares/fstat.html
9. Kalinowski S.T. (2002) Evolutionary and statistical properties of three genetic distances. Molecular Ecology 11, 1263-73.
10. Keller B.C. & Leslie R.M. (1996) Sea-Silver: Inside British Columbia's Salmon Farming Industry. Horsdal and Schubert. Victoria. 138 pp.
11. King T.L., Kalinowski S.T., Schill W.B., Spidle A.P. & Lubinski B.A. (2001) Population structure of Atlantic salmon (Salmo salar L.) a range-wide perspective from microsatellite DNA variation. Molecular Ecology 10, 807-21.
12. Koljonen M.-L., Tähtinen J., Säjsä M. & Koskiniemi I. (2002) Maintenance of genetic diversity of Atlantic salmon (Salmo salar) by captive breeding programmes and the geographic distribution of microsatellite variation. Aquaculture 212, 69-92.
13. Levings C., Kieser D., Jamieson G.S. & Dudas S. (2002) Marine and estuarine alien species in the Strait of Georgia, British Columbia. In: Alien Invaders in Canada's Waters. Wetlands and Forests (ed. by R. Claudi, P. Nantel & E. Muckle-Jeffs), pp. 111-31. Natural Resources Canada, Canadian Forest Service, Ottawa.
14. Lewis P.O. & Zaykin D. (2001) Genetic Data Analysis: Computer Program for the Analysis of Allelic Data. Version 1.0 (d16c). Free program distributed by the authors over the internet from http:// lewis.eeb.uconn.edu/lewishome/ software.html
15. Luikart G. & Cornuet J.-M. (1999) Estimating the effective number of breeders from heterozygote excess in progeny. Genetics 151, 1211-6.
16. McConnell S.K., O'Reilly P., Hamilton L., Wright J.N. & Bentzen P. (1995) Polymorphic microsatellite loci from Atlantic salmon (Salmo salar): genetic differentiation of North American and European populations. Canadian Journal of Fisheries and Aquatic Sciences 52, 1863-72.
17. McConnell S.K., Ruzzante D.E., O'Reilly P. & Hamilton L. (1997) Microsatellite loci reveal highly significant genetic differentiation among Atlantic salmon (Salmo salar L.) stocks from the east coast of Canada. Molecular Ecology 6, 1075-89.
18. McGinnity P., Stone C., Taggart J.B., Cooke D., Cotter D., Hynes R., McCamley C., Cross T. & Ferguson A. (1997) Genetic impact of escaped farmed Atlantic salmon (Salmo salar L.) on native populations: use of DNA profiling to assess freshwater performance of wild, farmed, and hybrid progeny in a natural river environment. ICES Journal of Marine Science 54, 998-1008.
19. Nei M. (1972) Genetic distance between populations. American Naturalist 106, 283-92
20. Noakes D.J., Beamish R.J. & Kent M.L. (2000) On the decline of Pacific salmon and speculative links to salmon farming in British Columbia. Aquaculture 183, 363-86.
21. Norris A.T., Bradley D.G. & Cunningham E.P. (1999) Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 180, 247-64.
22. O'Reilly P.T., Hamilton L.C., McConnell S.K. & Wright J.M. (1996) Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Canadian Journal of Fisheries and Aquatic Sciences 53, 2292-98.
23. Olsen I.B., Wilson S.L. Kretschmer E.J., Jones K.C. & Seeb J.E. (2000) Characterization of 14 tetranucleotide microsatellite loci derived from Atlantic salmon. Molecular Ecology 9, 2185-6.
24. Page R.D.M. (1996) TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biological Sciences 12, 357-8.
25. Primmer C.R., Koskinen M.T. & Piironen J. (2000) The one that did not get away: individual assignment using microsatellite data detects a case of lishing competition fraud. Proceedings of the Royal Society of London. Series B 267, 1699-704.
26. Raymond M. & Rousset F. (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenism. Journal of Heredity 86, 248-9.
27. Rice W.R. (1989) Analyzing tables of statistical tests. Evolution 43, 223-5.
28. Schneider S., Roessli D. & Excoffier L. (2000) Arlequin Version 2.000: Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva, Switzerland.
29. Skaala Ø., Hoyheim B., Glover K. & Dahle G. (2004) Microsatellite analysis in domesticated and wild Atlantic salmon (Salmo salar L.): allelic diversity and identification of individuals. Aquaculture 240, 131-43.
30. Vasemägi A., Gross R., Paaver T., Kangur M., Nilsson J. & Eriksson L.-O. (2001) Identification of the origin of an Atlantic salmon (Salmo salar L.) population in a recently recolonized river in the Baltic Sea. Molecular Ecology 10, 2877-82.
31. Weir B.S. & Cockerham C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-70.
32. Whoriskey F., O'Reilly P. & Carr J.W. (2002) Reversal of the Recent Decreasing Trend of Escaped Farmed Atlantic salmon Entering Magaguadavic River, New Brunswick, Canada, and Genetic Evidence for the Presence of Escaped Juvenile and Adult Farmed Salmon of European Ancestry. ICES North Atlantic Salmon Working Group working paper 02/34, 11 pp.
33. Williamson K.S., Cordes J.F. & May B.P. (2002) Characterization of microsatellite loci in chinook salmon (Oncorhynchus tshawytscha) and cross-species amplification in other salmonids. Molecular Ecology Notes 2, 17-9.