메뉴 건너뛰기




Volumn 35, Issue 4, 2007, Pages

Electrospray ionisation-cleavable tandem nucleic acid mass tag-peptide nucleic acid conjugates: Synthesis and applications to quantitative genomic analysis using electrospray ionisation-MS/MS

Author keywords

[No Author keywords available]

Indexed keywords

ANTHRAX TOXIN; DNA; OLIGONUCLEOTIDE; PEPTIDE NUCLEIC ACID;

EID: 34047235502     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl1123     Document Type: Article
Times cited : (14)

References (41)
  • 1
    • 0030825878 scopus 로고    scopus 로고
    • 2′-Fluoro modified nucleic acids: Polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry
    • Ono,T., Scalf,M. and Smith,L.M. (1997) 2′-Fluoro modified nucleic acids: Polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry. Nucleic Acids Res., 25, 4581-4588.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4581-4588
    • Ono, T.1    Scalf, M.2    Smith, L.M.3
  • 2
    • 0029084910 scopus 로고
    • Matrix-assisted laser desorption/ionization mass spectrometry of immobilized duplex DNA probes
    • Tang,K., Fu,D., Kotter,S., Cotter,R.J., Cantor,C.R. and Koster,H. (1995) Matrix-assisted laser desorption/ionization mass spectrometry of immobilized duplex DNA probes. Nucleic Acids Res., 23, 3126-3131.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3126-3131
    • Tang, K.1    Fu, D.2    Kotter, S.3    Cotter, R.J.4    Cantor, C.R.5    Koster, H.6
  • 3
    • 0030863195 scopus 로고    scopus 로고
    • Multiplex genotyping of PCR products with MassTag-labeled primers
    • Haff,L.A. and Smirnov,I.P. (1997) Multiplex genotyping of PCR products with MassTag-labeled primers. Nucleic Acids Res., 25, 3749-3750.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3749-3750
    • Haff, L.A.1    Smirnov, I.P.2
  • 7
    • 0031266354 scopus 로고    scopus 로고
    • A sequencing method for RNA oligonucleotides based on mass spectrometry
    • Faulstich,K., Worner,K., Brill,H. and Engels,J.W. (1997) A sequencing method for RNA oligonucleotides based on mass spectrometry. Anal. Chem., 69, 4349-4353.
    • (1997) Anal. Chem. , vol.69 , pp. 4349-4353
    • Faulstich, K.1    Worner, K.2    Brill, H.3    Engels, J.W.4
  • 8
    • 0031242546 scopus 로고    scopus 로고
    • Analysis of short tandem repeat polymorphisms in human DNA by matrix-assisted laser desorption/ionization mass spectrometry
    • Ross,P.L. and Belgrader,P. (1997) Analysis of short tandem repeat polymorphisms in human DNA by matrix-assisted laser desorption/ ionization mass spectrometry. Anal. Chem., 69, 3966-3972.
    • (1997) Anal. Chem. , vol.69 , pp. 3966-3972
    • Ross, P.L.1    Belgrader, P.2
  • 9
    • 4043100379 scopus 로고    scopus 로고
    • Multiplexed hybridizations of positively charge-tagged peptide nucleic acids detected by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Bauer,O., Guerasimova,A., Sauer,S., Thamm,S., Steinfath,M., Herwig,R., Janitz,M., Lehrach,H. and Radelof,U. (2004) Multiplexed hybridizations of positively charge-tagged peptide nucleic acids detected by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom., 18, 1821-1829.
    • (2004) Rapid Commun. Mass Spectrom. , vol.18 , pp. 1821-1829
    • Bauer, O.1    Guerasimova, A.2    Sauer, S.3    Thamm, S.4    Steinfath, M.5    Herwig, R.6    Janitz, M.7    Lehrach, H.8    Radelof, U.9
  • 10
    • 33646826525 scopus 로고    scopus 로고
    • Novel method for high throughput DNA methylation marker evaluation using PNA-probe library hybridization and MALDI-TOF detection
    • Schatz,P., Distler,J., Berlin,K. and Schuster,M. (2006) Novel method for high throughput DNA methylation marker evaluation using PNA-probe library hybridization and MALDI-TOF detection. Nucleic Acids Res., 34, e59.
    • (2006) Nucleic Acids Res. , vol.34
    • Schatz, P.1    Distler, J.2    Berlin, K.3    Schuster, M.4
  • 11
    • 0031572434 scopus 로고    scopus 로고
    • Discrimination of singlenucleotide polymorphisms in human DNA using peptide nucleic acid probes detected by MALDI-TOF mass spectrometry
    • Ross,P.L., Lee,K. and Belgrader,P. (1997) Discrimination of singlenucleotide polymorphisms in human DNA using peptide nucleic acid probes detected by MALDI-TOF mass spectrometry. Anal. Chem., 69, 4197-4202.
    • (1997) Anal. Chem. , vol.69 , pp. 4197-4202
    • Ross, P.L.1    Lee, K.2    Belgrader, P.3
  • 12
    • 0031437217 scopus 로고    scopus 로고
    • Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry
    • Griffin,T.J., Tang,W. and Smith,L.M. (1997) Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry. Nat. Biotechnol., 15, 1368-1372.
    • (1997) Nat. Biotechnol. , vol.15 , pp. 1368-1372
    • Griffin, T.J.1    Tang, W.2    Smith, L.M.3
  • 14
    • 0037402412 scopus 로고    scopus 로고
    • A highly efficient and automated method of purifying and desalting PCR products for analysis by electrospray ionization mass spectrometry
    • Jiang,Y. and Hofstadler,S.A. (2003) A highly efficient and automated method of purifying and desalting PCR products for analysis by electrospray ionization mass spectrometry. Anal. Biochem., 316, 50-57.
    • (2003) Anal. Biochem. , vol.316 , pp. 50-57
    • Jiang, Y.1    Hofstadler, S.A.2
  • 16
    • 0030220420 scopus 로고    scopus 로고
    • Charge-state reduction with improved signal intensity of oligonucleotides in electrospray ionization mass spectrometry
    • Muddiman,D.C., Cheng,C., Udseth,H.R. and Smith,R.D. (1996) Charge-state reduction with improved signal intensity of oligonucleotides in electrospray ionization mass spectrometry. J. Am. Soc. Mass Spectrom., 7, 697-706.
    • (1996) J. Am. Soc. Mass Spectrom. , vol.7 , pp. 697-706
    • Muddiman, D.C.1    Cheng, C.2    Udseth, H.R.3    Smith, R.D.4
  • 17
    • 12444345515 scopus 로고    scopus 로고
    • Tandem Nucleic acid mass Tag: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
    • Thompson,A., Schafer,J., Kuhn,K., Kienle,S., Schwarz,J., Schmidt,G., Neumann,T. and Hamon,C. (2003) Tandem Nucleic acid mass Tag: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem., 75, 1895-1904.
    • (2003) Anal. Chem. , vol.75 , pp. 1895-1904
    • Thompson, A.1    Schafer, J.2    Kuhn, K.3    Kienle, S.4    Schwarz, J.5    Schmidt, G.6    Neumann, T.7    Hamon, C.8
  • 18
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi,S.P., Rist,B., Gerber,S.A., Turecek,F., Gelb,M.H. and Aebersold,R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol., 17, 994-999.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 21
    • 0033291227 scopus 로고    scopus 로고
    • Trityl mass-tags for encoding in combinatorial oligonucleotide synthesis
    • Shchepinov,M.S., Chalk,R. and Southern,E.M. (1999) Trityl mass-tags for encoding in combinatorial oligonucleotide synthesis. Nucleic Acids Symp. Ser., 42, 107-108.
    • (1999) Nucleic Acids Symp. Ser. , vol.42 , pp. 107-108
    • Shchepinov, M.S.1    Chalk, R.2    Southern, E.M.3
  • 22
    • 0026675896 scopus 로고
    • Electrophoresis and detection of tin-labeled DNAs on open-faced gels
    • Doktycz,M.J., Arlinghaus,H.F., Allen,R.C. and Jacobson,K.B. (1992) Electrophoresis and detection of tin-labeled DNAs on open-faced gels. Electrophoresis, 13, 521-528.
    • (1992) Electrophoresis , vol.13 , pp. 521-528
    • Doktycz, M.J.1    Arlinghaus, H.F.2    Allen, R.C.3    Jacobson, K.B.4
  • 28
    • 0029986009 scopus 로고    scopus 로고
    • Peptide nucleic acids (PNA): Synthesis, properties and potential applications
    • Hyrup,B. and Nielsen,P.E. (1996) Peptide nucleic acids (PNA): Synthesis, properties and potential applications. Bioorg. Med. Chem., 4, 5-23.
    • (1996) Bioorg. Med. Chem. , vol.4 , pp. 5-23
    • Hyrup, B.1    Nielsen, P.E.2
  • 29
    • 0028038592 scopus 로고
    • Peptide nucleic acid (PNA). A DNA mimic with a peptide backbone
    • Nielsen,P.E., Egholm,M. and Buchardt,O. (1994) Peptide nucleic acid (PNA). A DNA mimic with a peptide backbone. Bioconjug. Chem., 5, 3-7.
    • (1994) Bioconjug. Chem. , vol.5 , pp. 3-7
    • Nielsen, P.E.1    Egholm, M.2    Buchardt, O.3
  • 30
    • 0032925881 scopus 로고    scopus 로고
    • Applications of peptide nucleic acids
    • Nielsen,P.E. (1999) Applications of peptide nucleic acids. Curr. Opin. Biotechnol., 10, 71-75.
    • (1999) Curr. Opin. Biotechnol. , vol.10 , pp. 71-75
    • Nielsen, P.E.1
  • 31
    • 18144384737 scopus 로고    scopus 로고
    • Atmospheric pressure ionization in a miniature mass spectrometer
    • Laughlin,B.C., Mulligan,C.C. and Cooks,R.G. (2005) Atmospheric pressure ionization in a miniature mass spectrometer. Anal. Chem., 77, 2928-2939.
    • (2005) Anal. Chem. , vol.77 , pp. 2928-2939
    • Laughlin, B.C.1    Mulligan, C.C.2    Cooks, R.G.3
  • 32
    • 4043060624 scopus 로고    scopus 로고
    • Rectilinear ion trap: Concepts, calculations, and analytical performance of a new mass analyzer
    • Ouyang,Z., Wu,G., Song,Y., Li,H., Plass,W.R. and Cooks,R.G. (2004) Rectilinear ion trap: Concepts, calculations, and analytical performance of a new mass analyzer. Anal. Chem., 76, 4595-4605.
    • (2004) Anal. Chem. , vol.76 , pp. 4595-4605
    • Ouyang, Z.1    Wu, G.2    Song, Y.3    Li, H.4    Plass, W.R.5    Cooks, R.G.6
  • 34
  • 35
    • 32444433051 scopus 로고    scopus 로고
    • Rectilinear ion trap mass spectrometer with atmospheric pressure interface and electrospray ionization source
    • Song,Q., Kothari,S., Senko,M.A., Schwartz,J.C., Amy,J.W., Stafford,G.C., Cooks,R.G. and Ouyang,Z. (2006) Rectilinear ion trap mass spectrometer with atmospheric pressure interface and electrospray ionization source. Anal. Chem., 78, 718-725.
    • (2006) Anal. Chem. , vol.78 , pp. 718-725
    • Song, Q.1    Kothari, S.2    Senko, M.A.3    Schwartz, J.C.4    Amy, J.W.5    Stafford, G.C.6    Cooks, R.G.7    Ouyang, Z.8
  • 37
    • 0034506737 scopus 로고    scopus 로고
    • Five-membered ring formation in unimolecular reactions of peptides: A key structural element controlling low-energy collision-induced dissociation of peptides
    • Schlosser,A. and Lehmann,W.D. (2000) Five-membered ring formation in unimolecular reactions of peptides: A key structural element controlling low-energy collision-induced dissociation of peptides. J. Mass. Spectrom., 35, 1382-1390.
    • (2000) J. Mass. Spectrom. , vol.35 , pp. 1382-1390
    • Schlosser, A.1    Lehmann, W.D.2
  • 38
    • 0034501099 scopus 로고    scopus 로고
    • Mobile and localized protons: A framework for understanding peptide dissociation
    • Wysocki,V.H., Tsaprailis,G., Smith,L.L. and Breci,L. (2000) Mobile and localized protons: A framework for understanding peptide dissociation. J. Mass. Spectrom., 35, 1399-1406.
    • (2000) J. Mass. Spectrom. , vol.35 , pp. 1399-1406
    • Wysocki, V.H.1    Tsaprailis, G.2    Smith, L.L.3    Breci, L.4
  • 40
    • 27744591519 scopus 로고    scopus 로고
    • Diffusion, mixing, and associated dye effects in DNA-microarray hybridizations
    • Borden,J.R., Paredes,C.J. and Papoutsakis,E.T. (2005) Diffusion, mixing, and associated dye effects in DNA-microarray hybridizations. Biophys. J., 89, 3277-3284.
    • (2005) Biophys. J. , vol.89 , pp. 3277-3284
    • Borden, J.R.1    Paredes, C.J.2    Papoutsakis, E.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.