Analysis of Short Tandem Repeat Polymorphisms in Human DNA by Matrix-Assisted Laser Desorption/lonization Mass Spectrometry

Analytical Chemistry

Volumn 69, Issue 19, 1997, Pages 3966-3972

  Ross, Philip L ^a   Belgrader, Phillip ^a  

^a ARMED FORCES INSTITUTE OF PATHOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; HUMAN; MASS SPECTROMETRY; METHODOLOGY; NUCLEOTIDE REPEAT; POLYMERASE CHAIN REACTION;

DNA; HUMANS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 0031242546     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac970312t     Document Type: Article

References (43)

1. Saiki, R. K.; Gelfand, D. H.; Stoffel, S.; Scharf, S. J.; Higuchi, R.; Horn, G. T.; Mullis, K. B. Science 1988, 239, 487-491.
2. Jeffreys, A. J.; Wilson, V.; Thein, S. L. Nature 1985, 316, 76-79.
3. Nakamura, Y.; Leppert, M.; O'Connel, P.; Wolff, R.; Holm, T.; Culver, M.; Martin, C.; Fujimoto, E.; Hoff, M.; Kumlin, E.; White, R. Science 1987, 235, 1616-1622.
4. Budowle, B.; Chakraborty, R.; Giusti, A. M.; Eisenberg, A. J.; Allen, R. C. Am. J. Hum. Genet. 1991, 48, 137-144.
5. Reynolds, R.; Sensabaugh, G. Anal. Chem. 1991, 63, 2-15.
6. Edwards, A.; Civitello, A.; Hammond, H. A.; Caskey, C. T. Am. J. Hum. Genet. 1991, 49, 746-756.
7. Edwards, A.; Hammond, H. A.; Jin, L.; Caskey, C. T.; Chakraborty, R. Genomics 1992, 12, 241-253.
8. Polymeropoulos, M. H.; Rath, D. S.; Xiao, H.; Merril, C. R. Nucleic Acids Res. 1991, 19, 4018.
9. Polymeropoulos, M. H.; Xiao, H.; Rath, D. S.; Merril, C. R. Nucleic Acids Res. 1991, 19, 3753.
10. Bikker, H.; Baas, F.; de Vijlder, J. J. M. Hum. Mol. Genet. 1992, 1, 137.
11. Lins, A. M.; Sprecher, C. J.; Puers, C.; Schumm, J. W. Biotechniques 1996, 20, 882-889.
12. Beckman, J. S.; Weber, J. L. Genomics 1992, 12, 627-631.
13. Sprecher, C. J.; Puers, C.; Lins, A. M.; Schumm, J. W. Biotechniques 1996, 20, 266-276.
14. Schlotterer, C.; Tautz, D. Nucleic Acids Res. 1992, 20, 211-215.
15. Levinson, G.; Gutman, G. A. Mol. Biol. Evol. 1987, 4, 203-221.
16. Hammond, H. A.; Jin, L.; Zhong, Y.; Caskey, C. T.; Chakraborty, R. Am. J. Hum. Genet. 1994, 55, 175-189.
17. Hillenkamp, F.; Karas, M.; Beavis, R. C.; Chait, B. T. Anal. Chem. 1991, 63, 1193A-1203A.
18. Pieles, U.; Zürcher, W.; Schär, M.; Moser, H. E. Nucleic Acids Res. 1993, 21, 3191-3196.
19. Jurinke, C.; van den Boom, D.; Jacob, A.; Tang, K.; Wörl, R.; Köster, H. Anal. Biochem. 1996, 237, 174-181.
20. Juhasz, P.; Roskey, M. T.; Smirnov, I. P.; Haff, L. A.; Vestal, M. L.; Martin, S. A. Anal. Chem. 1996, 68, 941-946.
21. Bentzley, C. M.; Johnston, M. V.; Larsen, B. S.; Gutteridge, S. Anal. Chem. 1996, 68, 2141-2146.
22. Shaler, T. A.; Yan, Y.; Wickham, J. N., Wu, K. J.; Becker, C. H. Rapid Comm Mass Spectrom. 1995, 9, 942.
23. Wu, K. J.; Shaler, T. A.; Becker, C. H. Anal. Chem. 1994, 66, 1637-1645.
24. Tang, W.; Zhu, L.; Smith, L. M. Anal. Chem. 1997, 69, 302-312.
25. Zhu, L.; Parr, G. P.; Fitzgerald, M. C.; Nelson, C. M.; Smith, L. M. J. Am. Chem. Soc. 1995, 117, 6048-6056.
26. Cháng, L.-Y.; Tang, K.; Schell, M.; Ringelberg, C.; Mattesen, K. J.; Allman, S. L.; Chen, C. H. Rapid Commun. Mass Spectrom. 1995, 9, 772-774.
27. Hurst, G. B.; Doktycz, M. J.; Vass, A. A.; Buchanan, M. V. Rapid Commun. Mass Spectrom. 1996, 10, 377-382.
28. Tang, K.; Allman, A. L.; Chen, C. H.; Cháng, L. Y.; Schell, M. Rapid Commun. Mass Spectrom. 1994, 8, 183-186.
29. Tang, K.; Taranenko, N. I.; Allman, S. L.; Cháng, L. Y.; Chen, C. H. Rapid Commun. Mass Spectrom. 1994, 8, 727-730.
30. Doktycz, M. J.; Hurst, G. B.; Habibi-Goudarzi, S.; McLuckey, S. A.; Tang, K.; Chen, C. H.; Uziel, M.; Jacobson, K. B.; Woychik, R. P.; Buchanan, M. V. Anal. Biochem. 1995, 230, 205-214.
31. Liu, Y.-H.; Bai, J.; Liang, X.; Lubman, D. M.; Venta, P. J. Anal. Chem. 1995, 67, 3482-3490.
32. Liu, Y. H.; Bai, J.; Zhu, Y.; Liang, X.; Semeniak, D.; Venta, P. J.; Lubman, D. M. Rapid Commun. Mass Spectrom. 1995, 9, 735-743.
33. Girault, S.; Chassaing, G.; Blais, J. C.; Brunot, A.; Bolbach, G. Anal. Chem. 1996, 68, 2122-2126.
34. Tang, K.; Fu, D.; Kotter, S.; Cotter, R. J.; Cantor, C. R.; Köster, H. Nucleic Acids Res. 1995, 23, 3126-3131.
35. Chou, C.-W.; Bingham, S. E.; Williams, P. Rapid Commun. Mass Spectrom. 1996, 10, 1410-1414.
36. Köster, H.; Tang, K.; Fu, D.-J.; Braun, A.; van den Boom, D.; Smith, C. L.; Cotter, R. J.; Cantor, C. R. Nature Biotechnol. 1996, 14, 1123-1128.
37. Hultman, T.; Stahl, S.; Hornes, E.; Uhlen, M. Nucleic Acids Res. 1989, 17, 4937-4946.
38. Tong, X.; Smith, L. M. DNA Sequence 1993, 4, 151-162.
39. Pepe, G. Hum. Mutat. 1993, 2, 300-305.
40. Görisch, H. Anal. Biochem. 1988, 173, 393.
41. STR-THO1 typing of individuals in this study was performed using Promega (Madison, WI) Geneprint STR systems.
42. Walsh, P. S.; Fildes, N. J.; Reynolds, R. Nucleic Acids Res. 1996, 24, 2807-2812.
43. Puers, C.; Hammond, H. A.; Jin, L.; Caskey, T. C.; Schumm, J. W. Am. J. Hum. Genet. 53, 1993, 953-958.