Development of a microfluidic biosensor for detection of environmental mycobacteria

Sensors and Actuators, B: Chemical

Volumn 123, Issue 1, 2007, Pages 614-621

  Jing, Gaoshan ^a   Polaczyk, Amy ^a   Oerther, Daniel B ^a   Papautsky, Ian ^a  

^a University of Cincinnati   (United States)

Author keywords

Environmental sensor; Microfluidic biosensor; Mycobacteria

Indexed keywords

BACTERIA; BIOCHIPS; HEALTH CARE; MICROFLUIDICS; MICROORGANISMS; PARAFFINS; PHOTORESISTS;

ENVIRONMENTAL MYCOBACTERIA; MICROFLUIDIC BIOSENSORS; PROTOTYPE BIOCHIPS; PROTOTYPE BIOSENSORS;

BIOSENSORS;

EID: 33947663539     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2006.07.029     Document Type: Article

References (42)

1. Pitt P., and Jenkins D. Causes and control of nocardia in activated sludge. Water Environ. Res. 62 (1990) 143
2. Seviour E., Williams C., Seviour R., Soddell J., and Lindrea K. Survey of filamentous bacterial populations from foaming activated sludge plants in eastern states of Australia. Water Res. 24 (1990) 493-498
3. Soddell J., and Seviour R. Microbiology of foaming in activated sludge plants-a review. J. Appl. Bacteriol. 69 (1990) 145
4. G. Sayler, Personal communication.
5. Ryan K.J., and Ray C.G. Sherris Medical Microbiology: An Introduction to Infectious Diseases. 4th ed. (2003), McGraw-Hill
6. M. Dworkin (ed.), The Prokaryotes: An Evolving Electronic Resource for the Microbiology Community, http://www.141.150.157.117:8080/prokPUB/index.htm.
7. McCormick J.B. Epidemiology of emerging/re-emerging antimicrobial-resistant bacterial pathogens. Curr. Opin. Microbiol. 1 (1998) 125-129
8. Horsburgh C.R. In vitro and in vivo antimycobacterial activities of a new quinolone. N. Engl. J. Med. 324 (1991) 1332-1338
9. Nightingale S.D., Byrd L., Southern P., Jockusch J., Cal S., and Wynne B. Incidence of Mycobacterium avium-intracellulare complex bacteremia in human immunodeficiency virus-positive patients. J. Infect. Dis. 165 (1992) 1082-1085
10. Safe Drinking Water Act: Contaminant Candidate List, US Environmental Protection Agency, http://www.epa. gov/safewater/ccl/index.html.
11. Federal Register notice about the Contaminant Candidate List, US Environmental Protection Agency, http://www.epa.gov/safewater/ccl/ccl fr.html.
12. Drinking Water Contaminant Candidate List 2; Final Notice [Federal Register: February 24, 2005 (vol. 70, no. 36)] [Notices] [pp. 9071-9077], http://www. epa.gov/safewater/ccl/ccl2_list.html.
13. Ollar R., and Connell N. Molecular Mycobacteriology (1999), Marcel Dekker, New York
14. Jenkins D., Richards M., and Daigger G. Manual on the Causes and Control of Filamentous Bulking and Foaming. 3rd ed. (2003), CRC Press
15. Eikelboom D. Process Control of Activated Sludge Plants by Microscopic Investigation (2000), International Water Association, London, UK
16. Oerther D., de los Reyes III F., Hernandez M., and Raskin L. Simultaneous application of oligonucleotide probes and an antibody stain for in situ detection of Gordona spp. FEMS Microbiol. Ecol. 29 (1999) 129-136
17. Iwahori K., Miyata N., Morisada S., and Suzuki N. Rapid detection of Nocardia amarae in the activated sludge process using enzyme-linked immunosorbent assay (ELISA). J. Biosci. Bioeng. 89 (2000) 469-473
18. Iwahori K., Miyata N., Takata N., Morisada S., and Mochizuki T. Production of anti-Gordonia amarae mycolic acid polyclonal antibody for detection of mycolic acid-containing bacteria in activated sludge foam. J. Biosci. Bioeng. 92 (2001) 417-422
19. de los Reyes F., Ritter W., and Raskin L. Group-specific small-subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems. Appl. Environ. Microbiol. 63 (1997) 1107-1117
20. Schuppler M., Wagner M., Schon G., and Gobel U. In situ identification of nocardioform actinomycetes in activated sludge using fluorescent rRNA-targeted oligonucleotide probes. Microbiology 144 (1998) 249-259
21. de los Reyes III F.L., Oerther D.B., de los Reyes M.F., Hernandez M., and Raskin L. Characterization of filamentous foaming in activated sludge systems using oligonucleotide hybridization probes and antibody probes. Water Sci. Technol. 37 (1998) 485-493
22. de los Reyes M.F., de los Reyes F.L., Hernandez M., and Raskin L. Identification and quantification of Gordona amarae strains in activated sludge systems using comparative rRNA sequence analysis and phylogenetic hybridization probes. Water Sci. Technol. 37 (1998) 521-525
23. Cha D., Fuhrmann J., Kim D., and Golt C. Fatty acid methyl ester (FAME) analysis for monitoring Nocardia levels in activated sludge. Water Res. 33 (1999) 1964-1966
24. Soddell J., and Seviour R. Growth of an activated sludge foam-forming bacterium, Nocardia Pinensis, on hydrophobic substrates. Water Sci. Technol. 34 (1996) 113-118
25. Sohngen N. Zbl. Bakt. Hyg. Abt. II 37 (1913) 595-609
26. Jing G., Eluru H., Polaczyk A., Kinkle B., Oerther D., and Papautsky I. Paraffin surfaces for culture-based detection of mycobacteria in environmental samples. J. Micromech. Microeng. 15 (2005) 270-276
27. Polaczyk A., Eluru H., Papautsky I., Kinkle B., and Oerther D. Culture-based MEMS device to track Gordonia in activated sludge. Environ. Sci. Technol. 40 (2006) 2269-2274
28. Becker H., and Locascio L.E. Polymer microfluidic devices. Talanta 56 (2002) 267
29. Narasimhan J., and Papautsky I. Polymer embossing tools for rapid prototyping plastic microfluidic devices. J. Micromech. Microeng. 14 (2004) 96-103
30. Lee J.-H., Peterson E.T.K., Dagani G., and Papautsky I. Rapid prototyping of plastic microfluidic devices in COC. Proc. SPIE 5718 (2005) 82-91
31. Lee L., Madou M., Koelling K., Daunert S., Lai S., Koh C., Juang Y.-J., Lu Y., and Yu L. Design and fabrication of CD-like microfluidic platform for diagnostics: polymer-based microfabrication. Biomed. Microdevices 3 (2001) 339-351
32. In: Eaton A. (Ed). Standard Methods for Examination of Water and Wastewater. 21st ed. (2005), American Public Health Association Publications, Washington, DC
33. Becker H., and Gartner C. Polymer microfabrication methods for microfluidic analytical applications. Electrophoresis 21 (2000) 12
34. Rötting O., Röpke W., Becker H., and Gärtner C. Polymer microfabrication technologies. Microsyst. Technol. 8 (2002) 32-36
35. Ahn C., Choi J.-W., Beaucage G., Nevin J., Lee J.-B., Puntambekar A., and Lee J.Y. Disposable smart lab on a chip for point of care clinical diagnostics. Proc. IEEE 92 (2004) 154-173
36. Piruska A., Nikcevic I., Lee S.H., Ahn C., Heineman W., Limbach P., and Seliskar C. The autofluorescence of plastic materials and chips under laser irradiation. Lab Chip 5 (2005) 1348-1354
37. ® Grade 5013 Data Sheet (2004), Ticona Inc., http://www.ticona.com.
38. CRC Handbook of Chemistry and Physics. 85th ed. (2005), CRC Press
39. Niklaus F., Stemme G., Lu J.-Q., and Gutmann R.J. Adhesive wafer bonding. J. Appl. Phys. 99 (2006) 031101
40. Klink G., and Hillerich B. Wafer bonding with an adhesive coating. Proc. SPIE 3514 (1998) 50-61
41. Huang Z., Sanders J.C., Dunsmor C., Ahmadzadeh H., and Landers J.P. A method for UV-bonding in the fabrication of a glass electrophoretic microchips. Electrophoresis 22 (2001) 3924
42. Schlautmann S., Besselink G.A.J., Prabhu R., and Schasfoort R.B.M. Fabrication of a microfluidic chip by UV bonding at room temperature for integration of temperature-sensitive layers. J. Micromech. Microeng. 13 (2003) S81-S84