Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01

Applied and Environmental Microbiology

Volumn 62, Issue 12, 1996, Pages 4471-4477

  Habe, Hiroshi ^a   Kasuga, Kano ^a   Nojiri, Hideaki ^a   Yamane, Hisakazu ^a   Omori, Toshio ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

2 HYDROXY 6 OXO 6 PHENYLHEXA 2,4 DIENOIC ACID; 2 HYDROXY 6 OXO 7 METHYLOCTA 2,4 DIENOIC ACID; CUMENE; DNA; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; DNA DEGRADATION; GENE AMPLIFICATION; GENE CLUSTER; NUCLEOTIDE SEQUENCE; PSEUDOMONAS FLUORESCENS; SEQUENCE HOMOLOGY;

GENETTA; PSEUDOMONAS; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; PSEUDOMONAS SAVASTANOI;

EID: 0030000836     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.62.12.4471-4477.1996     Document Type: Article

References (39)

1. 112 in catalytic activity. Gene 156:69-74.
2. Aoki, H., T. Kimura, H. Habe, H. Yamane, T. Kodama, and T. Omori. 1996. Cloning, nucleotide sequence and characterization of the genes encoding the enzymes involved in the degradation of cumene to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoic acid in Pseudomonas fluorescens IP01. J. Ferment. Bioeng. 81:187-196.
3. Black, P. N. 1991. Primary sequence of the Escherichia coli fadL gene encoding an outer membrane protein required for long-chain fatty acid transport. J. Bacteriol. 173:435-442.
4. Comai, L., and T. Kosuge. 1983. Transposable element that causes mutations in a plant pathogenic Pseudomonas sp. J. Bacteriol. 154:1162-1167.
5. Dayhoff, M. O., R. M. Schwartz, and B. C. Orcutt. 1978. A model of evolutionary change in proteins, p. 345-352. In M. O. Dayhoff (ed.), Atlas of protein sequence and structure, vol. 5, Suppl. 3. National Biomedical Research Foundation, Washington, D.C.
6. Eaton, R. W., and K. N. Timmis. 1986. Characterization of a plasmid-specific pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204. J. Bacteriol. 168:123-131.
7. Ensley, B. D., B. J. Ratzkin, T. D. Osslund, M. J. Simon, L. P. Wackett, and D. T. Gibson. 1983. Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo. Science 222:167-169.
8. Erickson, B. D., and F. J. Mondello. 1992. Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400. J. Bacteriol. 174:2903-2912.
9. Furukawa, K., J. Hirose, A. Suyama, T. Zaiki, and S. Hayashida. 1993. Gene components responsible for discrete substrate specificity in the metabolism of biphenyl (bph operon) and toluene (tod operon). J. Bacteriol. 175:5224-5232.
10. Gibson, D. T., J. R. Koch, and R. E. Kallio. 1968. Oxidative degradation of aromatic hydrocarbons by microorganisms. I. Enzymatic formation of catechol from benzene. Biochemistry 7:2653-2662.
11. Grindley, N. D. F., and R. R. Reed. 1985. Transpositional recombination in prokaryotes. Annu. Rev. Biochem. 54:863-896.
12. Habe, H., T. Kimura, H. Nojiri, H. Yamane, and T. Omori. 1996. Cloning and nucleotide sequence of the genes involved in the meta-cleavage pathway of cumene degradation in Pseudomonas fluorescens IP01. J. Ferment. Bioeng. 81:247-254.
13. Harayama, S. Unpublished data (DDBJ, EMBL, and GenBank accession number D63341).
14. Harayama, S., M. Rekik, M. Wubbolts, K. Rose, R. A. Leppik, and K. N. Timmis. 1989. Characterization of live genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products. J. Bacteriol. 171:5048-5055.
15. Hayase, N., K. Taira, and K. Furukawa. 1990. Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: cloning, analysis and expression in soil bacteria. J. Bacteriol. 172:1160-1164.
16. Higgins, D. G., and P. M. Sharp. 1989. Fast and sensitive multiple sequence alignments on a microcomputer. Comput. Appl. Biosci. 5:151-153.
17. Hofer, B., S. Backhaus, and K. N. Timmis. 1994. The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes. Gene 144:9-16.
18. Hofer, B., L. D. Eltis, D. N. Dowling, and K. N. Timmis. 1993. Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation. Gene 130:47-55.
19. Horn, J., S. Harayama, and K. N. Timmis. 1991. DNA sequence determination of the TOL plasmid xylGFJ genes of Pseudomonas putida: implications for the evolution of aromatic metabolism. Mol. Microbiol. 5:2459-2474.
20. Kikuchi, Y., Y. Nagata, M. Hinata, K. Kimbara, M. Fukuda, K. Yano, and M. Takagi. 1994. Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102. J. Bacteriol. 176:1689-1694.
21. Kimbara, K., T. Hashimoto, M. Fukuda, T. Koana, M. Takagi, M. Oishi, and K. Yano. 1989. Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102. J. Bacteriol. 171:2740-2747.
22. Lau, P. C. K., H. Bergeron, D. Labbé, Y. Wang, R. Brousseau, and D. T. Gibson. 1994. Sequence and expression of the todGIH genes involved in the last three steps of toluene degradation by Pseudomonas putida F1. Gene 146:7-13.
23. Maeda, M., M. S. Roberts, and T. Kudo. 1996. Evolution of meta-cleavage aromatic degradation pathways. Presented at the JRDC-MSU Joint Symposium on Microbial Evolution and Biodegradation, Tokyo, Japan, February 1996.
24. Masai, E., A. Yamada, J. M. Healy, T. Hatta, K. Kimbara, M. Fukuda, and K. Yano, 1995. Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. Appl. Environ. Microbiol. 61:2079-2085.
25. Menn, F.-M., G. J. Zylstra, and D. T. Gibson. 1991. Location and sequence of the todF gene encoding 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase in Pseudomonas putida F1. Gene 104:91-94.
26. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
27. Nordlund, I., and V. Shingler. 1990. Nucleotide sequences of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydrolase. Biochim. Biophys. Acta 1049: 227-230.
28. Platt, T. 1986. Transcription terminal ion and the regulation of gene expression. Annu. Rev. Biochem. 55:339-372.
29. Rak, B., and M. von Reutern. 1984. Insertion element IS5 contains a third gene. EMBO J. 3:807-811.
30. Reichlin, F., and H.-P. E. Kohler. 1994. Pseudomonas sp. strain HBP1 Prp degrades 2-isopropylphenol (ortho-cumenol) via meta cleavage. Appl. Environ. Microbiol. 60:4587-4591.
31. Smidt, M., and T. Kosuge. 1978. The role of indole-3-acetic acid accumulation by alphamethyl tryptophan-resistant mutants of Pseudomonas savastanoi in gall formation on oleanders. Physiol. Plant. Pathol. 13:203-214.
32. Taira, K., J. Hirose, S. Hayashida, and K. Furukawa. 1992. Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707. J. Biol. Chem. 267:4844-4853.
33. van der Meer, J. R., W. M. de Vos, S. Harayama, and A. J. B. Zehnder. 1992. Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiol. Rev. 56:677-694.
34. Vieira, J., and J. Messing. 1987. Production of single-stranded plasmid DNA. Methods Enzymol. 153:3-11.
35. Wang, Y., and P. C. K. Lau. 1996. Specificity of the tod promoter determined by TodX in Pseudomonas putida F1, abstr. II-154, p. 510. In Abstracts of the 96th General Meeting of the American Society for Microbiology 1996. American Society for Microbiology, Washington, D.C.
36. Wang, Y., M. Rawlings, D. T. Gibson, D. Labbé, H. Bergeron, R. Brousseau, and P. C. K. Lau. 1995. Identification of a membrane: protein and a truncated LysR-type regulator associated with the toluene degradation pathway in Pseudomonas putida F1. Mol. Gen. Genet. 246:570-579.
37. Yamada, Y., P.-D. Lee, and T. Kosuge. 1992. Insertion sequence elements of Pseudomonas, savastanoi: nucleotide sequence and homology with Agrobacterium tumefaciens transfer DNA. Proc. Natl. Acad. Sci. USA 83:8263-8267.
38. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
39. Zylstra, G. J., W. R. McCombie, D. T. Gibson, and B. A. Finette. 1988. Toluene degradation of Pseudomonas putida F1: genetic organization of the tod operon. Appl. Environ. Microbiol. 54:1498-1503.