메뉴 건너뛰기




Volumn 7, Issue SUPPL.2, 2006, Pages

RiboaptDB: A comprehensive database of ribozymes and aptamers

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER SEQUENCES; BINDING POCKETS; COMBINATORIAL APPROACH; FUNCTIONAL NUCLEIC ACIDS; INDIVIDUAL FEATURES; RANDOM SEQUENCE; SEQUENCE DATABASE; SEQUENCE INFORMATIONS;

EID: 33947314593     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-S2-S6     Document Type: Article
Times cited : (20)

References (45)
  • 1
    • 0030996755 scopus 로고    scopus 로고
    • The New World of ribozymes
    • Jaeger L: The New World of ribozymes. Curr Opin Struct Biol 1997, 7(3):324-335.
    • (1997) Curr Opin Struct Biol , vol.7 , Issue.3 , pp. 324-335
    • Jaeger, L.1
  • 2
    • 0029119820 scopus 로고
    • Artificial evolution and natural ribozymes
    • Kumar PK, Ellington AD: Artificial evolution and natural ribozymes. Faseb J 1995, 9(12):1183-1195.
    • (1995) Faseb J , vol.9 , Issue.12 , pp. 1183-1195
    • Kumar, P.K.1    Ellington, A.D.2
  • 3
    • 0028943759 scopus 로고
    • Antigene, ribozyme and aptamer nucleic acid drugs: Progress and prospects
    • Stull RA, Szoka FC Jr: Antigene, ribozyme and aptamer nucleic acid drugs: Progress and prospects. Pharm Res 1995, 12(4):465-483.
    • (1995) Pharm Res , vol.12 , Issue.4 , pp. 465-483
    • Stull, R.A.1    Szoka Jr., F.C.2
  • 4
    • 0031171217 scopus 로고    scopus 로고
    • Rational design of allosteric ribozymes
    • Tang J, Breaker RR: Rational design of allosteric ribozymes. Chem Biol 1997, 4(6):453-459.
    • (1997) Chem Biol , vol.4 , Issue.6 , pp. 453-459
    • Tang, J.1    Breaker, R.R.2
  • 5
    • 0142093108 scopus 로고    scopus 로고
    • Artificial ribozymes: Selection and application for nonnatural amino acid mutagenesis
    • Murakami H, Suga S: [Artificial ribozymes: selection and application for nonnatural amino acid mutagenesis]. Tanpokushitsu Kakusan Koso 2003, 48(11 Suppl): 1511-1518.
    • (2003) Tanpokushitsu Kakusan Koso , vol.48 , Issue.11 SUPPL. , pp. 1511-1518
    • Murakami, H.1    Suga, H.2
  • 6
    • 0028017999 scopus 로고
    • Artificial ribozyme and antisense gene expression in Saccharomyces cerevisiae
    • Atkins D, Gerlach WL: Artificial ribozyme and antisense gene expression in Saccharomyces cerevisiae. Antisense Res Dev 1994, 4(2):109-117.
    • (1994) Antisense Res Dev , vol.4 , Issue.2 , pp. 109-117
    • Atkins, D.1    Gerlach, W.L.2
  • 7
    • 0035368080 scopus 로고    scopus 로고
    • Artificial ribozymes and deoxyribozymes
    • Jaschke A: Artificial ribozymes and deoxyribozymes. Curr Opin Struct Nat 2001, 11(3):321-326.
    • (2001) Curr Opin Struct Nat , vol.11 , Issue.3 , pp. 321-326
    • Jaschke, A.1
  • 8
    • 0027417088 scopus 로고
    • Substrate selection rules for the hairpin ribozyme determined by in vitro selection, mutation, and analysis of mismatched substrates
    • Joseph S, Berzal-Herranz A, Chowrira BM, Butcher SE, Burke JM: Substrate selection rules for the hairpin ribozyme determined by in vitro selection, mutation, and analysis of mismatched substrates. Genes Dev 1993, 7(1):130-138.
    • (1993) Genes Dev , vol.7 , Issue.1 , pp. 130-138
    • Joseph, S.1    Berzal-Herranz, A.2    Chowrira, B.M.3    Butcher, S.E.4    Burke, J.M.5
  • 9
    • 33646802654 scopus 로고    scopus 로고
    • Aptamer to Ribozyme: The Intrinsic Catalytic Potential of a Small RNA
    • Brackett DM, Dieckmann T: Aptamer to Ribozyme: The Intrinsic Catalytic Potential of a Small RNA. Chembiochem 2006, 7(5):839-843.
    • (2006) Chembiochem , vol.7 , Issue.5 , pp. 839-843
    • Brackett, D.M.1    Dieckmann, T.2
  • 11
    • 0036669749 scopus 로고    scopus 로고
    • Aptamer rivalry
    • Sen D: Aptamer rivalry. Chem Nat 2002, 9(8):851-852.
    • (2002) Chem Nat , vol.9 , Issue.8 , pp. 851-852
    • Sen, D.1
  • 13
    • 0005620475 scopus 로고    scopus 로고
    • Aptamers as therapeutic and diagnostic agents
    • Brody EN, Gold L: Aptamers as therapeutic and diagnostic agents. J Biotechnol 2000, 74(1):5-13.
    • (2000) J Biotechnol , vol.74 , Issue.1 , pp. 5-13
    • Brody, E.N.1    Gold, L.2
  • 14
    • 0028191743 scopus 로고
    • All you wanted to know about SELEX
    • Klug SJ, Famulok M: All you wanted to know about SELEX. Mol Biol Rep 1994, 20(2):97-107.
    • (1994) Mol Biol Rep , vol.20 , Issue.2 , pp. 97-107
    • Klug, S.J.1    Famulok, M.2
  • 15
    • 0031151974 scopus 로고    scopus 로고
    • The joys of in vitro selection: Chemically dressing oligonucleotides to satiate protein targets
    • Eaton BE: The joys of in vCtro selection: chemically dressing oligonucleotides to satiate protein targets. Curr Opin Chem Biol 1997, 1(1):10-16.
    • (1997) Curr Opin Chem Biol , vol.1 , Issue.1 , pp. 10-16
    • Eaton, B.E.1
  • 16
    • 27644440466 scopus 로고    scopus 로고
    • FluMag-SELEX as an advantageous method for DNA aptamer selection
    • Stoltenburg R, Reinemann C, Strehlitz B: FluMag-SELEX as an advantageous method for DNA aptamer selection. Anal Bioanal Chem 2005, 383(1):83-91.
    • (2005) Anal Bioanal Chem , vol.383 , Issue.1 , pp. 83-91
    • Stoltenburg, R.1    Reinemann, C.2    Strehlitz, B.3
  • 17
    • 0028965943 scopus 로고
    • A DNA aptamer that binds adenosine and ATP
    • Huizenga DE, Szostak JW: A DNA aptamer that binds adenosine and ATP. Biochemistry 1995, 34(2):6S6-665.
    • (1995) Biochemistry , vol.34 , Issue.2
    • Huizenga, D.E.1    Szostak, J.W.2
  • 18
    • 3142758746 scopus 로고    scopus 로고
    • A small aptamer with strong and specific recognition of the triphosphate of ATP
    • Sazani PL, Larralde R, Szostak JW: A small aptamer with strong and specific recognition of the triphosphate of ATP. J Am Chem Soc 2004, 126(27):8370-8371.
    • (2004) J Am Chem Soc , vol.126 , Issue.27 , pp. 8370-8371
    • Sazani, P.L.1    Larralde, R.2    Szostak, J.W.3
  • 19
    • 33646352484 scopus 로고    scopus 로고
    • Characterization and Application of a Novel RNA Aptamer against the Mouse Prion Protein
    • (Tokyo)
    • Sekiya S, Noda K, Nishikawa F, Yokoyama T, Kumar PK, Nishikawa S: Characterization and Application of a Novel RNA Aptamer against the Mouse Prion Protein. J Biochem (Tokyo) 2006, 139(3):383-390.
    • (2006) J Biochem , vol.139 , Issue.3 , pp. 383-390
    • Sekiya, S.1    Noda, K.2    Nishikawa, F.3    Yokoyama, T.4    Kumar, P.K.5    Nishikawa, S.6
  • 20
    • 0029917203 scopus 로고    scopus 로고
    • Protein synthesis editing by a DNA aptamer
    • Hale SP, Schimmel P: Protein synthesis editing by a DNA aptamer. Proc Nad Acad Sci U S A 1996, 93(7):2755-2758.
    • (1996) Proc Nad Acad Sci U S A , vol.93 , Issue.7 , pp. 2755-2758
    • Hale, S.P.1    Schimmel, P.2
  • 21
    • 0029972909 scopus 로고    scopus 로고
    • Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy
    • Yang Y, Kochoyan M, Burgstaller P, Westhof E, Famulok M: Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy. Science 1996, 272(5266):1343-1347.
    • (1996) Science , vol.272 , Issue.5266 , pp. 1343-1347
    • Yang, Y.1    Kochoyan, M.2    Burgstaller, P.3    Westhof, E.4    Famulok, M.5
  • 22
    • 3142651349 scopus 로고    scopus 로고
    • Aptamer-dependent full-length cDNA synthesis by overlap extension PCR
    • Mitani Y, Nakayama T, Harbers M, Hayashizakii Y: Aptamer-dependent full-length cDNA synthesis by overlap extension PCR. Biotechniques 2004, 37(1):128-129.
    • (2004) Biotechniques , vol.37 , Issue.1 , pp. 128-129
    • Mitani, Y.1    Nakayama, T.2    Harbers, M.3    Hayashizakii, Y.4
  • 23
    • 2942652397 scopus 로고    scopus 로고
    • The robustness of naturally and artificially selected nucleic acid secondary structures
    • Meyers LA, Lee JF, Cowperthwaite M, Ellington AD: The robustness of naturally and artificially selected nucleic acid secondary structures. J Mol Evol 2004, 58(6):681-691.
    • (2004) J Mol Evol , vol.58 , Issue.6 , pp. 681-691
    • Meyers, L.A.1    Lee, J.F.2    Cowperthwaite, M.3    Ellington, A.D.4
  • 24
    • 0042191838 scopus 로고    scopus 로고
    • A modular, bifunctional RNA that integrates itself into a target RNA
    • Kumar RM, Joyce GF: A modular, bifunctional RNA that integrates itself into a target RNA. Proc Natl Acad Sci U S A 2003, 100(17):9738-9743.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.17 , pp. 9738-9743
    • Kumar, R.M.1    Joyce, G.F.2
  • 25
    • 0035879386 scopus 로고    scopus 로고
    • Aptamer beacons for the direct detection of proteins
    • Hamaguchi N, Ellington A, Stanton M: Aptamer beacons for the direct detection of proteins. Anal Biochem 2001, 294(2):126-131.
    • (2001) Anal Biochem , vol.294 , Issue.2 , pp. 126-131
    • Hamaguchi, N.1    Ellington, A.2    Stanton, M.3
  • 26
    • 0036771047 scopus 로고    scopus 로고
    • Aptamers and aptazymes: Accelerating small molecule drug discovery
    • Burgstaller P, JenAe A, Blind M: Aptamers and aptazymes: accelerating small molecule drug discovery. Curr Opin Drug Discov Devel 2002, 5(5):690-700.
    • (2002) Curr Opin Drug Discov Devel , vol.5 , Issue.5 , pp. 690-700
    • Burgstaller, P.1    Jenne, A.2    Blind, M.3
  • 27
    • 10444236381 scopus 로고    scopus 로고
    • Therapeutic oligonucleotides: The state-of-the-art in purification technologies
    • Sanghvi YS, Schulte M: TTerapeutic oligonucleotides: the state-of-the-art in purification technologies. Curr Opin Drug Discov Devel 2004, 7(6):765-776.
    • (2004) Curr Opin Drug Discov Devel , vol.7 , Issue.6 , pp. 765-776
    • Sanghvi, Y.S.1    Schulte, M.2
  • 28
    • 3042636195 scopus 로고    scopus 로고
    • Aptamer selection for the inhibition of cell adhesion with fibronectin as target
    • Ogawa A, Tomita N, Kikuchi N, Sando S, Aoyama Y: Aptamer selection for the inhibition of cell adhesion with fibronectin as target. Bioorg Med Chem Lett 2004, 14(15):4001-4004.
    • (2004) Bioorg Med Chem Lett , vol.14 , Issue.15 , pp. 4001-4004
    • Ogawa, A.1    Tomita, N.2    Kikuchi, N.3    Sando, S.4    Aoyama, Y.5
  • 29
    • 20444436800 scopus 로고    scopus 로고
    • Nucleic acid aptamers in therapeutic anticoagulation. Technology, development and clinical application
    • Becker RC, Rusconi C, Sullenger B: Nucleic acid aptamers in therapeutic anticoagulation. Technology, development and clinical application. Thromb Hoemost 2005, 93(6):1014-1020.
    • (2005) Thromb Hoemost , vol.93 , Issue.6 , pp. 1014-1020
    • Becker, R.C.1    Rusconi, C.2    Sullenger, B.3
  • 33
    • 24644458830 scopus 로고    scopus 로고
    • Aptamer-derived nucleic acid oligos: Applications to develop nucleic acid chips to analyze proteins and small ligands
    • Yamamoto-Fujita R, Kumar PK: Aptamer-derived nucleic acid oligos: applications to develop nucleic acid chips to analyze proteins and small ligands. Anal Chem 2005, 77(17):5460-5466.
    • (2005) Anal Chem , vol.77 , Issue.17 , pp. 5460-5466
    • Yamamoto-Fujita, R.1    Kumar, P.K.2
  • 34
    • 23944515324 scopus 로고    scopus 로고
    • Aptamer-based biosensors for the detection of HIV-I Tat protein
    • Tombelli S, Minunni M, Luzi E, Mascini M: Aptamer-based biosensors for the detection of HIV-I Tat protein. Biaelectrochemistry 2005, 67(2):135-141.
    • (2005) Biaelectrochemistry , vol.67 , Issue.2 , pp. 135-141
    • Tombelli, S.1    Minunni, M.2    Luzi, E.3    Mascini, M.4
  • 35
    • 20444396612 scopus 로고    scopus 로고
    • An aptamer-based protein biochip
    • Stadtherr K, Wolf H, Lindner P: An aptamer-based protein biochip. Anal Chem 2005, 77(11):437-3443.
    • (2005) Anal Chem , vol.77 , Issue.11 , pp. 437-3443
    • Stadtherr, K.1    Wolf, H.2    Lindner, P.3
  • 36
    • 0034655587 scopus 로고    scopus 로고
    • Design and optimization of effector-activated ribozyme ligases
    • Robertson MP, Ellington AD: Design and optimization of effector-activated ribozyme ligases. Nucleic Acids Res 2000, 28(8):1751-1759.
    • (2000) Nucleic Acids Res , vol.28 , Issue.8 , pp. 1751-1759
    • Robertson, M.P.1    Ellington, A.D.2
  • 39
    • 0035998745 scopus 로고    scopus 로고
    • SELEX_DB: A database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
    • Ponomarenko JV, Orlova GV, Frolov AS, Gelfand MS, Ponomarenko MP: SELEX_DB: A database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data. Nucleic Acids Res 2002, 30(1):195-199.
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 195-199
    • Ponomarenko, J.V.1    Orlova, G.V.2    Frolov, A.S.3    Gelfand, M.S.4    Ponomarenko, M.P.5
  • 40
    • 84886756460 scopus 로고    scopus 로고
    • [http://www.mysql.com].
  • 41
    • 84886766899 scopus 로고    scopus 로고
    • [http://www.php.com].
  • 42
    • 0036234876 scopus 로고    scopus 로고
    • Drug delivery system to control infectious diseases
    • Shoji Y, Shimada J, Mizushima Y: Drug delivery system to control infectious diseases. Curr Pharm Des 2002, 8(6):455-46S.
    • (2002) Curr Pharm Des , vol.8 , Issue.6
    • Shoji, Y.1    Shimada, J.2    Mizushima, Y.3
  • 43
    • 0037377340 scopus 로고    scopus 로고
    • Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA
    • Silverman SK: Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA. Rna 2003,9(4):377-383.
    • (2003) Rna , vol.9 , Issue.4 , pp. 377-383
    • Silverman, S.K.1
  • 44
    • 0033485863 scopus 로고    scopus 로고
    • Nucleic acid molecular switches
    • Soukup GA, Breaker RR: Nucleic acid molecular switches. Trends Biotechnol 1999, 17(12):469-476.
    • (1999) Trends Biotechnol , vol.17 , Issue.12 , pp. 469-476
    • Soukup, G.A.1    Breaker, R.R.2
  • 45
    • 84886763910 scopus 로고    scopus 로고
    • [http://www.archemix.com].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.