메뉴 건너뛰기




Volumn 45, Issue 3, 2007, Pages 736-746

Vibrio cholerae strain typing and phylogeny study based on simple sequence repeats

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALLELE; AQUATIC ENVIRONMENT; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CHOLERA; GENE LOCUS; GENE MUTATION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SCREENING; SEQUENCE ANALYSIS; SIMPLE SEQUENCE REPEAT; SINGLE NUCLEOTIDE POLYMORPHISM; TANDEM REPEAT; UNINDEXED SEQUENCE; VIBRIO CHOLERAE;

EID: 33947245586     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01895-06     Document Type: Article
Times cited : (69)

References (87)
  • 1
    • 4344700243 scopus 로고    scopus 로고
    • Multilocus short sequence repeat sequencing approach for differentiating among Mycobacterium avium subsp. paratuberculosis strains
    • Amonsin, A., L. L. Li, Q. Zhang, J. P. Bannantine, A. S. Motiwala, S. Sreevatsan, and V. Kapur. 2004. Multilocus short sequence repeat sequencing approach for differentiating among Mycobacterium avium subsp. paratuberculosis strains. J. Clin. Microbiol. 42:1694-1702.
    • (2004) J. Clin. Microbiol , vol.42 , pp. 1694-1702
    • Amonsin, A.1    Li, L.L.2    Zhang, Q.3    Bannantine, J.P.4    Motiwala, A.S.5    Sreevatsan, S.6    Kapur, V.7
  • 2
    • 0033962524 scopus 로고    scopus 로고
    • Pulsed-field gel electrophoresis-based molecular comparison of Vibrio cholerae O1 isolates from domestic and imported cases of cholera in Japan
    • Arakawa, E., T. Murase, S. Matsushita, T. Shimada, S. Yamai, T. Ito, and H. Watanabe. 2000. Pulsed-field gel electrophoresis-based molecular comparison of Vibrio cholerae O1 isolates from domestic and imported cases of cholera in Japan. J. Clin. Microbiol. 38:424-426.
    • (2000) J. Clin. Microbiol , vol.38 , pp. 424-426
    • Arakawa, E.1    Murase, T.2    Matsushita, S.3    Shimada, T.4    Yamai, S.5    Ito, T.6    Watanabe, H.7
  • 4
    • 0347721018 scopus 로고    scopus 로고
    • Simple sequence repeats (microsatellites): Mutational mechanisms and contributions to bacterial pathogenesis
    • Bayliss, C. D., K. M. Dixon, and E. R. Moxon. 2004. Simple sequence repeats (microsatellites): mutational mechanisms and contributions to bacterial pathogenesis. FEMS Immunol. Med. Microbiol. 40:11-19.
    • (2004) FEMS Immunol. Med. Microbiol , vol.40 , pp. 11-19
    • Bayliss, C.D.1    Dixon, K.M.2    Moxon, E.R.3
  • 6
    • 0029973165 scopus 로고    scopus 로고
    • DNA fingerprinting of Vibrio cholerae strains with a novel insertion sequence element: A tool to identify epidemic strains
    • Bik, E. M., R. D. Gouw, and F. R. Mooi. 1996. DNA fingerprinting of Vibrio cholerae strains with a novel insertion sequence element: a tool to identify epidemic strains. J. Clin. Microbiol. 34:1453-1461.
    • (1996) J. Clin. Microbiol , vol.34 , pp. 1453-1461
    • Bik, E.M.1    Gouw, R.D.2    Mooi, F.R.3
  • 7
    • 0028800493 scopus 로고
    • Typing Listeria monocytogenes; a comparison of random amplification of polymorphic DNA with five other methods
    • Boerlin, P., E. Bannerman, F. Ischer, J. Recourt, and J. Bille. 1995. Typing Listeria monocytogenes; a comparison of random amplification of polymorphic DNA with five other methods. Res. Microbiol. 146:35-49.
    • (1995) Res. Microbiol , vol.146 , pp. 35-49
    • Boerlin, P.1    Bannerman, E.2    Ischer, F.3    Recourt, J.4    Bille, J.5
  • 8
    • 15944378902 scopus 로고    scopus 로고
    • Adult non-biting midges: Possible windborne carriers of Vibrio cholerae non-O1 non-O139
    • Broza, M., H. Gancz, M. Halpern, and Y. Kashi. 2005. Adult non-biting midges: possible windborne carriers of Vibrio cholerae non-O1 non-O139. Environ. Microbiol. 7:576-585.
    • (2005) Environ. Microbiol , vol.7 , pp. 576-585
    • Broza, M.1    Gancz, H.2    Halpern, M.3    Kashi, Y.4
  • 9
    • 0035811474 scopus 로고    scopus 로고
    • Pathogen reservoirs: Chironomid egg masses and Vibrio cholerae
    • Broza, M., and M. Halpern. 2001. Pathogen reservoirs: chironomid egg masses and Vibrio cholerae. Nature 412:40.
    • (2001) Nature , vol.412 , pp. 40
    • Broza, M.1    Halpern, M.2
  • 10
    • 0032975868 scopus 로고    scopus 로고
    • Evolutionary relationships of pathogenic clones of Vibrio cholerae by sequence analysis of four housekeeping genes
    • Byun, R., L. D. Elbourne, R. Lan, and P. R. Reeves. 1999. Evolutionary relationships of pathogenic clones of Vibrio cholerae by sequence analysis of four housekeeping genes. Infect. Immun. 67: 1116-1124.
    • (1999) Infect. Immun , vol.67 , pp. 1116-1124
    • Byun, R.1    Elbourne, L.D.2    Lan, R.3    Reeves, P.R.4
  • 12
    • 0003867293 scopus 로고    scopus 로고
    • Standardized molecular subtyping of food-borne bacterial pathogen by pulsed-field gel electrophoresis. Centers for Diseases Control and Prevention, Atlanta, GA
    • Center for Diseases Control and Prevention. 2000. Standardized molecular subtyping of food-borne bacterial pathogen by pulsed-field gel electrophoresis. Centers for Diseases Control and Prevention, Atlanta, GA.
    • (2000) Center for Diseases Control and Prevention
  • 13
    • 0032954830 scopus 로고    scopus 로고
    • Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus
    • Chun, J., A. Huq, and R. R. Colwell. 1999. Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus. Appl. Environ. Microbiol. 65:2202-2208.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 2202-2208
    • Chun, J.1    Huq, A.2    Colwell, R.R.3
  • 14
    • 0036712507 scopus 로고    scopus 로고
    • Nucleotide sequence-based typing of bacteria and the impact of automation
    • Clarke, S. C. 2002. Nucleotide sequence-based typing of bacteria and the impact of automation. Bioessays 24:858-862.
    • (2002) Bioessays , vol.24 , pp. 858-862
    • Clarke, S.C.1
  • 15
    • 0030446912 scopus 로고    scopus 로고
    • Global climate and infectious disease: The cholera paradigm
    • Colwell, R. R. 1996. Global climate and infectious disease: the cholera paradigm. Science 274:2025-2031.
    • (1996) Science , vol.274 , pp. 2025-2031
    • Colwell, R.R.1
  • 16
    • 3342926241 scopus 로고    scopus 로고
    • Multilocus sequence typing-what is resolved?
    • Cooper, J. E., and E. J. Feil. 2004. Multilocus sequence typing-what is resolved? Trends Microbiol. 12:373-377.
    • (2004) Trends Microbiol , vol.12 , pp. 373-377
    • Cooper, J.E.1    Feil, E.J.2
  • 17
    • 0034759189 scopus 로고    scopus 로고
    • Clinical and environmental isolates of Vibrio cholerae serogroup O141 carry the CTX phage and the genes encoding the toxin-coregulated pili
    • Dalsgaard, A., O. Serichantalergs, A. Forslund, W. Lin, J. Mekalanos, E. Mintz, T. Shimada, and J. G. Wells. 2001. Clinical and environmental isolates of Vibrio cholerae serogroup O141 carry the CTX phage and the genes encoding the toxin-coregulated pili. J. Clin. Microbiol. 39:4086-4092.
    • (2001) J. Clin. Microbiol , vol.39 , pp. 4086-4092
    • Dalsgaard, A.1    Serichantalergs, O.2    Forslund, A.3    Lin, W.4    Mekalanos, J.5    Mintz, E.6    Shimada, T.7    Wells, J.G.8
  • 19
    • 0034454681 scopus 로고    scopus 로고
    • CTX prophages in classical biotype Vibrio cholerae: Functional phage genes but dysfunctional phage genomes
    • Davis, B. M., K. E. Moyer, E. F. Boyd, and M. K. Waldor. 2000. CTX prophages in classical biotype Vibrio cholerae: functional phage genes but dysfunctional phage genomes. J. Bacteriol. 182:6992-6998.
    • (2000) J. Bacteriol , vol.182 , pp. 6992-6998
    • Davis, B.M.1    Moyer, K.E.2    Boyd, E.F.3    Waldor, M.K.4
  • 20
    • 11844281973 scopus 로고    scopus 로고
    • Phylogeny and strain typing of Escherichia coli, inferred from variation at mononucleotide repeat loci
    • Diamant, E., Y. Palti, R. Gur-Arie, H. Cohen, E. M. Hallerman, and Y. Kashi. 2004. Phylogeny and strain typing of Escherichia coli, inferred from variation at mononucleotide repeat loci. Appl. Environ. Microbiol. 70:2464-2473.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 2464-2473
    • Diamant, E.1    Palti, Y.2    Gur-Arie, R.3    Cohen, H.4    Hallerman, E.M.5    Kashi, Y.6
  • 21
    • 0036177859 scopus 로고    scopus 로고
    • Allelic diversity and population structure in Vibrio cholerae O139 Bengal based on nucleotide sequence analysis
    • Farfan, M., D. Minana-Galbis, M. C. Fuste, and J. G. Loren. 2002. Allelic diversity and population structure in Vibrio cholerae O139 Bengal based on nucleotide sequence analysis. J. Bacteriol. 184:1304-1313.
    • (2002) J. Bacteriol , vol.184 , pp. 1304-1313
    • Farfan, M.1    Minana-Galbis, D.2    Fuste, M.C.3    Loren, J.G.4
  • 22
    • 18744372699 scopus 로고    scopus 로고
    • Strain typing of Borrelia burgdorferi, Borrelia aftelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis
    • Farlow, J., D. Postic, K. L. Smith, Z. Jay, G. Baranton, and P. Keim. 2002. Strain typing of Borrelia burgdorferi, Borrelia aftelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis. J. Clin. Microbiol. 40:4612-4618.
    • (2002) J. Clin. Microbiol , vol.40 , pp. 4612-4618
    • Farlow, J.1    Postic, D.2    Smith, K.L.3    Jay, Z.4    Baranton, G.5    Keim, P.6
  • 24
    • 0242321088 scopus 로고    scopus 로고
    • Pathogenicity islands and phages in Vibrio cholerae evolution
    • Faruque, S. M., and J. J. Mekalanos. 2003. Pathogenicity islands and phages in Vibrio cholerae evolution. Trends Microbiol. 11:505-510.
    • (2003) Trends Microbiol , vol.11 , pp. 505-510
    • Faruque, S.M.1    Mekalanos, J.J.2
  • 26
    • 0030044409 scopus 로고    scopus 로고
    • Long, polymorphic microsatellites in simple organisms
    • Field, D., and C. Wills. 1996. Long, polymorphic microsatellites in simple organisms. Proc. R. Soc. Lond. B Biol. Sci. 263:209-215.
    • (1996) Proc. R. Soc. Lond. B Biol. Sci , vol.263 , pp. 209-215
    • Field, D.1    Wills, C.2
  • 27
    • 0032539711 scopus 로고    scopus 로고
    • Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces
    • Field, D., and C. Wills. 1998. Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc. Natl. Acad. Sci. USA 95:1647-1652.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1647-1652
    • Field, D.1    Wills, C.2
  • 28
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phytogeny
    • Galtier, N., M. Gouy, and C. Gautier. 1996. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phytogeny. Comput. Appl. Biosci. 12:543-548.
    • (1996) Comput. Appl. Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 29
    • 0037710467 scopus 로고    scopus 로고
    • Molecular epidemiology of O139 Vibrio cholerae: Mutation, lateral gene transfer, and founder flush
    • Garg, P., A. Aydanian, D. Smith, J. Glenn, G. B. Nair, and O. C. Stine. 2003. Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer, and founder flush. Emerg. Infect. Dis. 9:810-814.
    • (2003) Emerg. Infect. Dis , vol.9 , pp. 810-814
    • Garg, P.1    Aydanian, A.2    Smith, D.3    Glenn, J.4    Nair, G.B.5    Stine, O.C.6
  • 30
    • 0033972529 scopus 로고    scopus 로고
    • Simple sequence repeats in Escherichia coli: Abundance, distribution, composition, and polymorphism
    • Gur-Arie, R., C. J. Cohen, Y. Eitan, L. Shelef, E. M. Hallerman, and Y. Kashi. 2000. Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism. Genome Res. 10:62-71.
    • (2000) Genome Res , vol.10 , pp. 62-71
    • Gur-Arie, R.1    Cohen, C.J.2    Eitan, Y.3    Shelef, L.4    Hallerman, E.M.5    Kashi, Y.6
  • 31
    • 3042764537 scopus 로고    scopus 로고
    • Chironomid egg masses as a natural reservoir of Vibrio cholerae non-O1 and non-O139 in freshwater habitats
    • Halpern, M., Y. B. Broza, S. Mittler, E. Arakawa, and M. Broza. 2004. Chironomid egg masses as a natural reservoir of Vibrio cholerae non-O1 and non-O139 in freshwater habitats. Microb. Ecol. 47:341-349.
    • (2004) Microb. Ecol , vol.47 , pp. 341-349
    • Halpern, M.1    Broza, Y.B.2    Mittler, S.3    Arakawa, E.4    Broza, M.5
  • 34
    • 0033989387 scopus 로고    scopus 로고
    • Genetic diversity of clinical and environmental isolates of Vibrio cholerae determined by amplified fragment length polymorphism fingerprinting
    • Jiang, S. C., M. Matte, G. Matte, A. Huq, and R. R. Colwell. 2000. Genetic diversity of clinical and environmental isolates of Vibrio cholerae determined by amplified fragment length polymorphism fingerprinting. Appl. Environ. Microbiol. 66:148-153.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 148-153
    • Jiang, S.C.1    Matte, M.2    Matte, G.3    Huq, A.4    Colwell, R.R.5
  • 36
    • 0031081111 scopus 로고    scopus 로고
    • Simple sequence repeats as a source of quantitative genetic variation
    • Kashi, Y., D. King, and M. Soller. 1997. Simple sequence repeats as a source of quantitative genetic variation. Trends Genet. 13:74-78.
    • (1997) Trends Genet , vol.13 , pp. 74-78
    • Kashi, Y.1    King, D.2    Soller, M.3
  • 37
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi, Y., and D. G. King. 2006. Simple sequence repeats as advantageous mutators in evolution. Trends Genet. 22:253-259.
    • (2006) Trends Genet , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 40
    • 4444308959 scopus 로고    scopus 로고
    • Anthrax molecular epidemiology and forensics: Using the appropriate marker for different evolutionary scales
    • Keim, P., M. N. Van Ert, T. Pearson, A. J. Vogler, L. Y. Huynh, and D. M. Wagner. 2004. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect. Genet. Evol. 4:205-213.
    • (2004) Infect. Genet. Evol , vol.4 , pp. 205-213
    • Keim, P.1    Van Ert, M.N.2    Pearson, T.3    Vogler, A.J.4    Huynh, L.Y.5    Wagner, D.M.6
  • 41
    • 16444380292 scopus 로고    scopus 로고
    • Highly diverse variable number tandem repeat loci in the Escherichia coli O157:H7 and O55:H7 genomes for high-resolution molecular typing
    • Keys, C., S. Kemper, and P. Keim. 2005. Highly diverse variable number tandem repeat loci in the Escherichia coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. J. Appl. Microbiol. 98:928-940.
    • (2005) J. Appl. Microbiol , vol.98 , pp. 928-940
    • Keys, C.1    Kemper, S.2    Keim, P.3
  • 42
    • 0030888889 scopus 로고    scopus 로고
    • Evolutionary tuning knobs
    • King, D. G., M. Soller, and Y. Kashi. 1997. Evolutionary tuning knobs. Endeavour 21:36-40.
    • (1997) Endeavour , vol.21 , pp. 36-40
    • King, D.G.1    Soller, M.2    Kashi, Y.3
  • 43
    • 0034830315 scopus 로고    scopus 로고
    • Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome
    • Klevytska, A. M., L. B. Price, J. M. Schupp, P. L. Worsham, J. Wong, and P. Keim. 2001. Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. J. Clin. Microbiol. 39:3179-3185.
    • (2001) J. Clin. Microbiol , vol.39 , pp. 3179-3185
    • Klevytska, A.M.1    Price, L.B.2    Schupp, J.M.3    Worsham, P.L.4    Wong, J.5    Keim, P.6
  • 44
    • 0038289112 scopus 로고    scopus 로고
    • Multilocus sequence typing has better discriminatory ability for typing Vibrio cholerae than does pulsed-field gel electrophoresis and provides a measure of phylogenetic relatedness
    • Kotetishvili, M., O. C. Stine, Y. Chen, A. Kreger, A. Sulakvelidze, S. Sozhamannan, and J. G. Morris, Jr. 2003. Multilocus sequence typing has better discriminatory ability for typing Vibrio cholerae than does pulsed-field gel electrophoresis and provides a measure of phylogenetic relatedness. J. Clin. Microbiol. 41:2191-2196.
    • (2003) J. Clin. Microbiol , vol.41 , pp. 2191-2196
    • Kotetishvili, M.1    Stine, O.C.2    Chen, Y.3    Kreger, A.4    Sulakvelidze, A.5    Sozhamannan, S.6    Morris Jr, J.G.7
  • 45
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 47
    • 0037337810 scopus 로고    scopus 로고
    • Comparative genomic analyses of the vibrio pathogenicity island and cholera toxin prophage regions in nonepidemic serogroup strains of Vibrio cholerae
    • Li, M. R., M. Kotetishvili, Y. S. Chen, and S. Sozhamannan. 2003. Comparative genomic analyses of the vibrio pathogenicity island and cholera toxin prophage regions in nonepidemic serogroup strains of Vibrio cholerae. Appl. Environ. Microbiol. 69:1728-1738.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 1728-1738
    • Li, M.R.1    Kotetishvili, M.2    Chen, Y.S.3    Sozhamannan, S.4
  • 48
    • 5344254628 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis
    • Lindstedt, B. A., T. Vardund, L. Aas, and G. Kapperud. 2004. Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J. Microbiol. Methods 59:163-172.
    • (2004) J. Microbiol. Methods , vol.59 , pp. 163-172
    • Lindstedt, B.A.1    Vardund, T.2    Aas, L.3    Kapperud, G.4
  • 49
    • 0036780202 scopus 로고    scopus 로고
    • Effects of global climate on infectious disease: The cholera model
    • Lipp, E. K., A. Huq, and R. R. Colwell. 2002. Effects of global climate on infectious disease: the cholera model. Clin. Microbiol. Rev. 15:757-770.
    • (2002) Clin. Microbiol. Rev , vol.15 , pp. 757-770
    • Lipp, E.K.1    Huq, A.2    Colwell, R.R.3
  • 50
    • 0028077554 scopus 로고
    • Molecular epidemiologic analysis of Vibrio cholerae O1 isolates by pulsed-field gel electrophoresis
    • Mahalingam, S., Y. M. Cheong, S. Kan, R. M. Yassin, J. Vadivelu, and T. Pang. 1994. Molecular epidemiologic analysis of Vibrio cholerae O1 isolates by pulsed-field gel electrophoresis. J. Clin. Microbiol. 32:2975-2979.
    • (1994) J. Clin. Microbiol , vol.32 , pp. 2975-2979
    • Mahalingam, S.1    Cheong, Y.M.2    Kan, S.3    Yassin, R.M.4    Vadivelu, J.5    Pang, T.6
  • 52
    • 14844345314 scopus 로고    scopus 로고
    • Microsatellite instability regulates transcription factor binding and gene expression
    • Martin, P., K. Makepeace, S. A. Hill, D. W. Hood, and E. R. Moxon. 2005. Microsatellite instability regulates transcription factor binding and gene expression. Proc. Natl. Acad. Sci. USA 102:3800-3804.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 3800-3804
    • Martin, P.1    Makepeace, K.2    Hill, S.A.3    Hood, D.W.4    Moxon, E.R.5
  • 53
    • 0021033756 scopus 로고
    • Duplication and amplification of toxin genes in Vibrio cholerae
    • Mekalanos, J. J. 1983. Duplication and amplification of toxin genes in Vibrio cholerae. Cell 35:253-263.
    • (1983) Cell , vol.35 , pp. 253-263
    • Mekalanos, J.J.1
  • 54
    • 0035187024 scopus 로고    scopus 로고
    • The microsatellites of Escherichia coli: Rapidly evolving repetitive DNAs in a non-pathogenic prokaryote
    • Metzgar, D., E. Thomas, C. Davis, D. Field, and C. Wills. 2001. The microsatellites of Escherichia coli: rapidly evolving repetitive DNAs in a non-pathogenic prokaryote. Mol. Microbiol. 39:183-190.
    • (2001) Mol. Microbiol , vol.39 , pp. 183-190
    • Metzgar, D.1    Thomas, E.2    Davis, C.3    Field, D.4    Wills, C.5
  • 55
    • 0542390231 scopus 로고
    • Synthesis of cholera toxin is positively regulated at the transcriptional level by toxR
    • Miller, V. L., and J. J. Mekalanos. 1984. Synthesis of cholera toxin is positively regulated at the transcriptional level by toxR. Proc. Natl. Acad. Sci. USA 81:3471-3475.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 3471-3475
    • Miller, V.L.1    Mekalanos, J.J.2
  • 56
    • 0028065674 scopus 로고
    • Adaptive evolution of highly mutable loci in pathogenic bacteria
    • Moxon, E. R., P. B. Rainey, M. A. Nowak, and R. E. Lenski. 1994. Adaptive evolution of highly mutable loci in pathogenic bacteria. Curr. Biol. 4:24-33.
    • (1994) Curr. Biol , vol.4 , pp. 24-33
    • Moxon, E.R.1    Rainey, P.B.2    Nowak, M.A.3    Lenski, R.E.4
  • 57
    • 0032615249 scopus 로고    scopus 로고
    • DNA microsatellites: Agents of evolution?
    • Moxon, E. R., and C. Wills. 1999. DNA microsatellites: agents of evolution? Sci. Am. 280:94-99.
    • (1999) Sci. Am , vol.280 , pp. 94-99
    • Moxon, E.R.1    Wills, C.2
  • 58
    • 0034458778 scopus 로고    scopus 로고
    • Rapid method for species-specific identification of Vibrio cholerae using primers targeted to the gene of outer membrane protein OmpW
    • Nandi, B., R. K. Nandy, S. Mukhopadhyay, G. B. Nair, T. Shimada, and A. C. Ghose. 2000. Rapid method for species-specific identification of Vibrio cholerae using primers targeted to the gene of outer membrane protein OmpW. J. Clin. Microbiol. 38:4145-4151.
    • (2000) J. Clin. Microbiol , vol.38 , pp. 4145-4151
    • Nandi, B.1    Nandy, R.K.2    Mukhopadhyay, S.3    Nair, G.B.4    Shimada, T.5    Ghose, A.C.6
  • 59
    • 0037311986 scopus 로고    scopus 로고
    • Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis
    • Noller, A. C., M. C. McEllistrem, O. C. Stine, J. G. Morris, D. J. Boxrud, B. Dixon, and L. H. Harrison. 2003. Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis. J. Clin. Microbiol. 41:675-679.
    • (2003) J. Clin. Microbiol , vol.41 , pp. 675-679
    • Noller, A.C.1    McEllistrem, M.C.2    Stine, O.C.3    Morris, J.G.4    Boxrud, D.J.5    Dixon, B.6    Harrison, L.H.7
  • 60
    • 0032904916 scopus 로고    scopus 로고
    • Principles and applications of methods for DNA-based typing of microbial organisms
    • Olive, D. M., and P. Bean. 1999. Principles and applications of methods for DNA-based typing of microbial organisms. J. Clin. Microbiol. 37:1661-1669.
    • (1999) J. Clin. Microbiol , vol.37 , pp. 1661-1669
    • Olive, D.M.1    Bean, P.2
  • 61
    • 5444240735 scopus 로고    scopus 로고
    • Evolutionary genetic analysis of the emergence of epidemic Vibrio cholerae isolates on the basis of comparative nucleotide sequence analysis and multilocus virulence gene profiles
    • O'Shea, Y. A., F. J. Reen, A. M. Quirke, and E. F. Boyd. 2004. Evolutionary genetic analysis of the emergence of epidemic Vibrio cholerae isolates on the basis of comparative nucleotide sequence analysis and multilocus virulence gene profiles. J. Clin. Microbiol. 42:4657-4671.
    • (2004) J. Clin. Microbiol , vol.42 , pp. 4657-4671
    • O'Shea, Y.A.1    Reen, F.J.2    Quirke, A.M.3    Boyd, E.F.4
  • 62
    • 0029864635 scopus 로고    scopus 로고
    • Genetic footprint on the ToxR-binding site in the promoter for cholera toxin
    • Pfau, J. D., and R. K. Taylor. 1996. Genetic footprint on the ToxR-binding site in the promoter for cholera toxin. Mol. Microbiol. 20:213-222.
    • (1996) Mol. Microbiol , vol.20 , pp. 213-222
    • Pfau, J.D.1    Taylor, R.K.2
  • 63
    • 17644391346 scopus 로고    scopus 로고
    • A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains
    • Purdy, A., F. Rohwer, R. Edwards, F. Azam, and D. H. Bartlett. 2005. A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. J. Bacteriol. 187:2992-3001.
    • (2005) J. Bacteriol , vol.187 , pp. 2992-3001
    • Purdy, A.1    Rohwer, F.2    Edwards, R.3    Azam, F.4    Bartlett, D.H.5
  • 65
    • 20144372091 scopus 로고    scopus 로고
    • Genomic and genetic analysis of Vibrio cholerae
    • Raskin, D., J. Bina, and J. Mekalanos. 2004. Genomic and genetic analysis of Vibrio cholerae. ASM News 70:57-62.
    • (2004) ASM News , vol.70 , pp. 57-62
    • Raskin, D.1    Bina, J.2    Mekalanos, J.3
  • 66
    • 14844284646 scopus 로고    scopus 로고
    • Molecular typing of epidemic and non-epidemic Vibrio cholerae isolates and differentiation of V. cholerae and V. mimicus isolates by PCR-single-strand conformation polymorphism analysis
    • Reen, F. J., and E. F. Boyd. 2005. Molecular typing of epidemic and non-epidemic Vibrio cholerae isolates and differentiation of V. cholerae and V. mimicus isolates by PCR-single-strand conformation polymorphism analysis. J. Appl. Microbiol. 98:544-555.
    • (2005) J. Appl. Microbiol , vol.98 , pp. 544-555
    • Reen, F.J.1    Boyd, E.F.2
  • 67
    • 0035378336 scopus 로고    scopus 로고
    • Genotypes associated with virulence in environmental isolates of Vibrio cholerae
    • Rivera, I. N. G., J. Chun, A. Huq, R. B. Sack, and R. R. Colwell. 2001. Genotypes associated with virulence in environmental isolates of Vibrio cholerae. Appl. Environ. Microbiol. 67:2421-2429.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 2421-2429
    • Rivera, I.N.G.1    Chun, J.2    Huq, A.3    Sack, R.B.4    Colwell, R.R.5
  • 69
    • 0037312201 scopus 로고    scopus 로고
    • Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones
    • Salcedo, C., L. Arreaza, B. Alcala, L. de la Fuente, and J. A. Vazquez. 2003. Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones. J. Clin. Microbiol. 41:757-762.
    • (2003) J. Clin. Microbiol , vol.41 , pp. 757-762
    • Salcedo, C.1    Arreaza, L.2    Alcala, B.3    de la Fuente, L.4    Vazquez, J.A.5
  • 70
    • 33947217978 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted.
  • 71
    • 11844303474 scopus 로고    scopus 로고
    • Array-based binary analysis for bacterial typing
    • Shepard, J. R., Y. Danin-Poleg, Y. Kashi, and D. R. Walt. 2005. Array-based binary analysis for bacterial typing. Anal. Chem. 77:319-326.
    • (2005) Anal. Chem , vol.77 , pp. 319-326
    • Shepard, J.R.1    Danin-Poleg, Y.2    Kashi, Y.3    Walt, D.R.4
  • 73
    • 0035146335 scopus 로고    scopus 로고
    • Molecular analysis of Vibrio cholerae O1, O139, non-O1, and non-O139 strains: Clonal relationships between clinical and environmental isolates
    • Singh, D. V., M. H. Matte, G. R. Matte, S. Jiang, F. Sabeena, B. N. Shukla, S. C. Sanyal, A. Huq, and R. R. Colwell. 2001. Molecular analysis of Vibrio cholerae O1, O139, non-O1, and non-O139 strains: clonal relationships between clinical and environmental isolates. Appl. Environ. Microbiol. 67:910-921.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 910-921
    • Singh, D.V.1    Matte, M.H.2    Matte, G.R.3    Jiang, S.4    Sabeena, F.5    Shukla, B.N.6    Sanyal, S.C.7    Huq, A.8    Colwell, R.R.9
  • 74
    • 0347951066 scopus 로고    scopus 로고
    • Molecular-genetic peculiarities of classical biotype Vibrio cholerae, the etiological agent of the last outbreak Asiatic cholera in Russia
    • Smirnova, N. I., N. B. Cheldyshova, S. P. Zadnova, and V. V. Kutyrev. 2004. Molecular-genetic peculiarities of classical biotype Vibrio cholerae, the etiological agent of the last outbreak Asiatic cholera in Russia. Microb. Pathog. 36:131-139.
    • (2004) Microb. Pathog , vol.36 , pp. 131-139
    • Smirnova, N.I.1    Cheldyshova, N.B.2    Zadnova, S.P.3    Kutyrev, V.V.4
  • 75
    • 20444400787 scopus 로고    scopus 로고
    • Amplified intergenic locus polymorphism as a basis for bacterial typing of Listeria spp. and Escherichia coli
    • Somer, L., Y. Danin-Poleg, E. Diamant, R. Gur-Arie, Y. Palti, and Y. Kashi. 2005. Amplified intergenic locus polymorphism as a basis for bacterial typing of Listeria spp. and Escherichia coli. Appl. Environ. Microbiol. 71:3144-3152.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 3144-3152
    • Somer, L.1    Danin-Poleg, Y.2    Diamant, E.3    Gur-Arie, R.4    Palti, Y.5    Kashi, Y.6
  • 76
    • 0141573521 scopus 로고    scopus 로고
    • A PCR method based on 16S rRNA sequence for simultaneous detection of the genus Listeria and the species Listeria monocytogenes in food products
    • Somer, L., and Y. Kashi. 2003. A PCR method based on 16S rRNA sequence for simultaneous detection of the genus Listeria and the species Listeria monocytogenes in food products. J. Food Prot. 66:1658-1665.
    • (2003) J. Food Prot , vol.66 , pp. 1658-1665
    • Somer, L.1    Kashi, Y.2
  • 78
    • 5444233459 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis, a novel typing scheme to study the genetic relatedness and epidemiology of Enterococcus faecium isolates
    • Top, J., L. M. Schouls, M. J. Bonten, and R. J. Willems. 2004. Multiple-locus variable-number tandem repeat analysis, a novel typing scheme to study the genetic relatedness and epidemiology of Enterococcus faecium isolates. J. Clin. Microbiol. 42:4503-4511.
    • (2004) J. Clin. Microbiol , vol.42 , pp. 4503-4511
    • Top, J.1    Schouls, L.M.2    Bonten, M.J.3    Willems, R.J.4
  • 79
    • 0141817852 scopus 로고    scopus 로고
    • Multi-locus sequence typing: A tool for global epidemiology
    • Urwin, R., and M. C. J. Maiden. 2003. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol. 11:479-487.
    • (2003) Trends Microbiol , vol.11 , pp. 479-487
    • Urwin, R.1    Maiden, M.C.J.2
  • 83
    • 2242489878 scopus 로고    scopus 로고
    • Vodop'ianov, S. O., I. P. Oleinikov, E. K. Goncharov, O. V. Duvanova, M. B. Mishan'kin, I. I. Suchkov, A. S. Vodop'ianov, M. V. Shishiianu, E. V. Shcherbakova, I. V. Kornienko, and B. N. Mishan'kin. 2002. Variable tandem repeat VcA of Vibrio cholerae. Mol. Biol. 36:1074-1079. (In Russian.)
    • Vodop'ianov, S. O., I. P. Oleinikov, E. K. Goncharov, O. V. Duvanova, M. B. Mishan'kin, I. I. Suchkov, A. S. Vodop'ianov, M. V. Shishiianu, E. V. Shcherbakova, I. V. Kornienko, and B. N. Mishan'kin. 2002. Variable tandem repeat VcA of Vibrio cholerae. Mol. Biol. 36:1074-1079. (In Russian.)
  • 84
    • 33947270971 scopus 로고    scopus 로고
    • Wachsmuth, K., Ø. Olsvik, G. M. Evins, and T. Popovic. 1994. Molecular epidemiology of cholera, p. 357-370. In I. K. Wachsmuth, P. A. Blake, and Ø. Olsvik (ed.), Vibrio cholerae and cholera: molecular to global perspectives. ASM Press, Washington, DC.
    • Wachsmuth, K., Ø. Olsvik, G. M. Evins, and T. Popovic. 1994. Molecular epidemiology of cholera, p. 357-370. In I. K. Wachsmuth, P. A. Blake, and Ø. Olsvik (ed.), Vibrio cholerae and cholera: molecular to global perspectives. ASM Press, Washington, DC.
  • 85
    • 0036074928 scopus 로고    scopus 로고
    • Subtyping of bacterial food-borne pathogens
    • Wiedmann, M. 2002. Subtyping of bacterial food-borne pathogens. Nutr. Rev. 60:201-208.
    • (2002) Nutr. Rev , vol.60 , pp. 201-208
    • Wiedmann, M.1
  • 86
    • 0642309746 scopus 로고    scopus 로고
    • GapCoder automates the use of indel characters in phylogenetic analysis
    • Young, N. D., and J. Healy. 2003. GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4:6.
    • (2003) BMC Bioinformatics , vol.4 , pp. 6
    • Young, N.D.1    Healy, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.