Allelic diversity and population structure in Vibrio cholerae O139 Bengal based on nucleotide sequence analysis

Journal of Bacteriology

Volumn 184, Issue 5, 2002, Pages 1304-1313

  Farfan M ^a   Minana Galbis D ^a   Fuste M C ^a   Loren J G ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTATE SEMIALDEHYDE DEHYDROGENASE; BACTERIAL DNA; CYTOSOL AMINOPEPTIDASE; ERYTHROSE 4 PHOSPHATE DEHYDROGENASE; ISOCITRATE DEHYDROGENASE (NADP); LYSINE DECARBOXYLASE; MALATE DEHYDROGENASE; NUCLEOTIDE; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENETICS; BACTERIUM ISOLATE; BASE MISPAIRING; COMPARATIVE GENE MAPPING; DNA SEQUENCE; ELECTROPHORESIS; GENE LOCUS; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOTYPE; HOUSEKEEPING GENE; INDIA; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS; VIBRIO CHOLERAE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PROKARYOTA; VIBRIO; VIBRIO CHOLERAE;

EID: 0036177859     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.5.1304-1313.2002     Document Type: Article

References (47)

1. Large outbreak of clinical cholera due to Vibrio cholerae non-O1 in Bangladesh
2. Vibrio cholerae 0139 in Calcutta, 1992-1998: Incidence, antibiograms, and genotypes
3. Genus 1: Vibrio
4. Genetic diversity and population structure of Vibrio cholerae
5. Genesis of the novel epidemic Vibrio cholerae O139 strain: Evidence for horizontal transfer of genes involved in polysaccharide synthesis
6. Molecular analyses of a putative CTXφ precursor and evidence for independent acquisition of distinct CTXφ by toxigenic Vibrio cholerae
7. Multilocus structure of natural populations of Hordeum spontaneum
8. Evolutionary relationships of pathogenic clones of Vibrio cholerae by sequence analysis of four housekeeping genes
9. Vibrios in the environment: Viable but nonculturable Vibrio cholerae
10. Borrelia burgdorferi is clonal: Implications for taxonomy and vaccine development
11. Genetic relationships between clinical and environmental Vibrio cholerae isolates based on multilocus enzyme electrophoresis
12. Emergence of a new clone of toxigenic Vibrio cholerae O1 biotype EITor displacing V. cholerae O139 Bengal in Bangladesh
13. Molecular analysis of toxigenic Vibrio cholerae O139 Bengal strains isolated in Bangladesh between 1993 and 1996: Evidence for emergence of a new clone of the Bengal vibrios
14. Genomic diversity among Vibrio cholerae O139 strains isolated in Bangladesh and India between 1992 and 1998
15. The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis
16. Clonality of multidrug-resistant nontypeable strains of Haemophilus influenzae
17. Population genetic analysis of Helicobacter pylori by multilocus enzyme electrophoresis: Extensive allelic diversity and recombinational population structure
18. LIAN 3.0: Detecting linkage disequilibrium in multilocus data
19. Using CLUSTAL W for multiple sequence alignments
20. Splits tree: Analyzing and visualizing evolutionary data
21. The sixth and seventh cholera pandemics are due to independent clones separately derived from environmental, nontoxigenic, non-O1 Vibrio cholerae
22. MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers
23. Genetic diversity, of clinical and environmental isolates of Vibrio cholerae determined by amplified fragment length polymorphism fingerprinting
24. Climate and infectious disease: Use of remote sensing for detection of Vibrio cholerae by indirect measurement
25. Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
26. Localized sex in bacteria
27. How clonal are bacteria?
28. Detecting recombination from gene trees
29. Cholera dynamics and El Niño-southern oscillation
30. Molecular epidemiology of reemergent Vibrio cholerae O139 Bengal in India
31. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
32. Nucleotide polymorphism and evolution in the glyceraldehyde-3-phosphate dehydrogenase gene (gapA) in natural populations of Salmonella and Escherichia coil
33. Clonal relationships among classic enteropathogenic Escherichia coli (EPEC) belonging to different O groups
34. Molecular subtyping of toxigenic Vibrio cholerae O139 causing epidemic cholera in India and Bangladesh, 1992-1993
35. Emergence of a novel strain of Vibrio cholerae with epidemic potential in Southern and Eastern India
36. Variation in O-antigens, niche specific selection and bacterial populations
37. Parallel evolution of virulence in pathogenic Escherichia coli
38. Clonal population structure of Pseudomonas stutzeri, a species with exceptional genetic diversity
39. DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
40. DNA sequencing with chain-terminating inhibitors
41. Statistical tests for detecting gene conversion
42. Novel Vibrio cholerae O139 genes involved in lipopolysaccharide biosynthesis
43. Allelic diversity and recombination in Campylobacter jejuni
44. Cloning and genetic analysis of the Vibrio cholerae aminopeptidase gene
45. Lysogenic conversion by a filamentous phage encoding cholera toxin
46. The population genetics of bacteria