Electron crystallography of membrane proteins: Two-dimensional crystallization and screening by electron microscopy

Methods

Volumn 41, Issue 4, 2007, Pages 417-426

  Schmidt Krey, Ingeborg ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Cryo EM; Detergent; Electron cryo microscopy; Electron crystallography; Image processing; Lipid to protein ratio; Membrane proteins; Screening; Structure; Two dimensional crystallization

Indexed keywords

BUFFER; MEMBRANE PROTEIN;

ARTICLE; CRYSTALLIZATION; CRYSTALLOGRAPHY; DATA COLLECTION METHOD; DIALYSIS; DIALYSIS PUMP; DIFFRACTION; ELECTRON MICROSCOPY; FREEZE FRACTURE; IMAGE PROCESSING; MEMBRANE STRUCTURE; PRIORITY JOURNAL; SCREENING; STRUCTURE ANALYSIS;

CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY; DETERGENTS; DIALYSIS; MEMBRANE PROTEINS;

EID: 33947151603     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2006.07.011     Document Type: Article

References (79)

1. Henderson R., and Unwin P.N.T. Nature 257 (1975) 28-32
2. Henderson R., Baldwin J.M., Ceska T.A., Zemlin F., Beckman E., and Downing K.H. J. Mol. Biol. 213 (1990) 899-929
3. Kühlbrandt W., Wang D.N., and Fujiyoshi Y. Nature 367 (1994) 614-621
4. Murata K., Mitsuoka K., Hirai T., Walz T., Agre P., Heymann J.B., Engel A., and Fujiyoshi Y. Nature 407 (2000) 599-605
5. Ren G., Reddy V.S., Cheng A., Melnyk P., and Mitra A.K. Proc. Natl. Acad. Sci. USA 98 (2001) 1398-1403
6. Miyazawa A., Fujiyoshi Y., and Unwin N. Nature 423 (2003) 949-955
7. Gonen T., Sliz P., Kistler J., Cheng Y., and Walz T. Nature 429 (2004) 193-197
8. Hiroaki Y., Tani K., Kamegawa A., Gyobu N., Nishikawa K., Suzuki H., Walz T., Sasaki S., Mitsuoka K., Kimura K., Mizoguchi A., and Fujiyoshi Y. J. Mol. Biol. 355 (2006) 628-639
9. Nogales E., Wolf S.G., and Downing K.H. Nature 391 (1998) 199-203
10. Löwe J., Li H., Downing K.H., and Nogales E. J. Mol. Biol. 313 (2001) 1045-1057
11. Gonen T., Cheng Y., Sliz P., Hiroaki Y., Fujiyoshi Y., Harrison S.C., and Walz T. Nature 438 (2005) 633-638
12. Subramaniam S., Gerstein M., Oesterhelt D., and Henderson R. EMBO J. 12 (1993) 1-8
13. Han B.-G., Vonck J., and Glaeser R.M. Biophys. J. 67 (1994) 1179-1186
14. Unwin N. Nature 373 (1995) 37-43
15. Vonck J. Biochemistry 35 (1996) 5870-5878
16. Subramaniam S., Lindahl M., Bullough P., Faruqi A.R., Tittor J., Oesterhelt D., Brown L., Lanyi J., and Henderson R. J. Mol. Biol. 287 (1999) 145-161
17. Subramaniam S., and Henderson R. J. Struct. Biol. 128 (1999) 19-25
18. Subramaniam S., and Henderson R. Nature 406 (2000) 653-657
19. Vonck J. EMBO J. 19 (2000) 2152-2160
20. Breyton C. J. Biol. Chem. 275 (2000) 13194-13201
21. Unwin N., Miyazawa A., Li J., and Fujiyoshi Y. J. Mol. Biol. 319 (2002) 1165-1176
22. Kühlbrandt W., Zeelen J., and Dietrich J. Science 297 (2002) 1692-1696
23. C.G. Tate, I. Ubarretxena-Belandia, J.M. Baldwin, 332 (2003) 229-242.
24. Kuo A., Domene C., Johnson L., Doyle D.A., and Vénien-Bryan C. Structure 13 (2005) 1463-1472
25. Vinothkumar K.R., Smits S.H.J., and Kühlbrandt W. EMBO J. 24 (2005) 2720-2729
26. Amos L.A., Henderson R., and Unwin P.N.T. Prog. Biophys. Mol. Biol. 39 (1982) 183-231
27. Unger V.M. Acta Cryst. D56 (2000) 1259-1269
28. Oostergetel G.T., Keegstra W., and Brisson A. J. Mol. Biol. 314 (2001) 245-252
29. Min G., Stolz M., Zhou G., Liang F., Sebbel P., Stoffler D., Glockshuber R., Sun T.T., Aebi U., and Kong X.P. J. Mol. Biol. 317 (2002) 697-706
30. Uzgiris E.E., and Kornberg R. Nature 301 (1983) 125-127
31. Kubale E.W., Kornberg R.D., and Darst S.A. Ultramicroscopy 35 (1991) 295-299
32. Mosser G., Mallouh V., and Brisson A. J. Mol. Biol. 226 (1992) 23-28
33. Avila-Sakar A.J., and Chiu W. Biophys. J. 70 (1994) 57-68
34. Kubalek E.W., Le Grice S.F., and Brown P.O. J. Struct. Biol. 113 (1994) 117-123
35. Leuther K.K., Bushnell D.A., and Kornberg R.D. Cell 85 (1996) 773-779
36. Chiu W., Avila-Sakar A.J., and Schmid M.F. Adv. Biophys. 34 (1997) 161-172
37. Lévy D., Mosser G., Lambert O., Moeck G.S., Bald D., and Rigaud J.L. J. Struct. Biol. 127 (1999) 44-52
38. Asturias F.J., and Kornberg R.D. J. Biol. Chem. 274 (1999) 6813-6816
39. Chang W.H., and Kornberg R.D. Cell 102 (2000) 609-613
40. Mosser G. Micron 32 (2001) 517-540
41. Avila-Sakar A.J., Misaghi S., Wilson-Kubalek E.M., Downing K.H., Zgurskaya H., Nikaido H., and Nogales E. J. Struct. Biol. 136 (2001) 81-88
42. Lebeau L., Lach F., Vénien-Bryant C., Renault A., Dietrich J., Jahn T., Palmgren M.G., Kühlbrandt W., and Mioskowski C. J. Mol. Biol. 308 (2001) 639-647
43. Isoda S., Miyamoto M., Inatomi K., and Ueyama S. Thin Sol. Films (2004) 255-261
44. Rigaud J.L., Mosser G., Lacapere J.J., Olofsson A., Lévy D., and Ranck J.L. J. Struct. Biol. 118 (1997) 226-235
45. Rigaud J.L., Chami M., Lambert O., Lévy D., and Ranck J.L. Biochim. Biophys. Acta 1508 (2000) 112-128
46. Kühlbrandt W. Q. Rev. Biophys. 25 (1992) 1-49
47. Jap B.K., Zulauf M., Scheybani T., Hefti A., Baumeister W., Aebi U., and Engel A. Ultramicroscopy 46 (1992) 45-84
48. Walz T., and Grigorieff N. J. Struct. Biol. 121 (1998) 142-161
49. Hasler L., Heymann J.B., Engel A., Kistler J., and Walz T. J. Struct. Biol. 121 (1998) 162-171
50. Stahlberg H., Fotiadis D., Scheuring S., Rémigy H., Braun T., Mitsuoka K., Fujiyoshi Y., and Engel A. FEBS Lett. 504 (2001) 166-172
51. Kühlbrandt W. In: Schägger H., and Hunte C. (Eds). Membrane Protein Purification and Crystallization: A Practical Approach. Second ed. (2003), Academic Press, San Diego 253-284
52. Nussberger S., Dorr K., Wang D.N., and Kühlbrandt W. J. Mol. Biol. 234 (1993) 347-356
53. Christie W.W. Lipid Analysis (1982), Pergamon Press, Oxford
54. Hamilton R.J., and Hamilton S. Lipid Analysis-A Practical Approach (1992), IRL Press at Oxford University Press, Oxford
55. Schmidt-Krey I., Lundqvist G., Morgenstern R., and Hebert H. J. Struct. Biol. 123 (1998) 87-96
56. Schmidt-Krey I., Kanaoka Y., Mills D.J., Irikura D., Haase W., Lam B.K., Austen K.F., and Kühlbrandt W. Structure 12 (2004) 2009-2014
57. Wang D.-N., Kühlbrandt W., Sarabia V.E., and Reithmeier R.A.F. EMBO J. 12 (1993) 2233-2239
58. Zhang P., Toyoshima C., Yonekura K., Green N.M., and Stokes D.L. Nature 392 (1998) 835-839
59. Behlau M., Mills D.J., Quader H., Kühlbrandt W., and Vonck J. J. Mol. Biol. 305 (2001) 71-77
60. Engel A., Holzenburg A., Stauffer K., Rosenbusch J., and Aebi U. In: Bailey G.W. (Ed). Proceedings of the 46th Annual Meeting of the Electron Microscopical Society of America (1988), San Francisco Press, San Francisco 152-153
61. Dubochet J., Adrian M., Chang J.J., Homo J.C., Lepault J., McDowall A.W., and Schultz P. Q. Rev. Biophys. 21 (1988) 129-228
62. Fujiyoshi Y. Adv. Biophys 35 (1998) 25-80
63. Henderson R., Baldwin J.M., Downing K.H., Lepault J., and Zemlin F. Ultramicroscopy 19 (1986) 147-178
64. Crowther R.A., Henderson R., and Smith J.M. J. Struct. Biol. 116 (1996) 9-16
65. Yeager M., Unger V.M., and Mitra A.K. In: Conn M. (Ed). Methods in Enzymology vol. 294 (1999), Academic Press, New York 135-178
66. Unwin N. Nature 373 (1995) 37-43
67. Ren G., Reddy V.S., Cheng A., Melnyk P., and Mitra A.K. Proc. Natl. Acad. Sci. USA 98 (2001) 1398-1403
68. Wang D.N., and Kühlbrandt W. J. Mol. Biol. 217 (1991) 691-699
69. Koning R.I., Osstergetel G.T., and Brisson A. Ulramicroscopy 94 (2003) 183-191
70. Gyobu N., Tani K., Hiroaki Y., Kamegawa A., Mitsuoka K., and Fujiyoshi Y. J. Struct. Biol. 146 (2004) 325-333
71. Kühlbrandt W., Wang D.N., and Fujiyoshi Y. Nature 367 (1994) 614-621
72. Downing K.H. Science 252 (1991) 53-59
73. Carragher B., Kisseberth N., Kriegman D., Milligan R.A., Potter C.S., Pulokas J., and Reilein A. J. Struct. Biol. 132 (2000) 33-45
74. Glaeser R.M. J. Struct. Biol. 128 (1999) 3-14
75. Oostergetel G.T., Keegstra W., and Brisson A. Ultramicroscopy 74 (1998) 47-59
76. Zhang P., Beatty A., Milne J.L.S., and Subramaniam S. J. Struct. Biol. 135 (2001) 251-261
77. Rouiller I., Pulokas J., Butel V.M., Milligan R.A., Wilson-Kubalek E.M., Potter C.S., and Carragher B.O. J. Struct. Biol. 133 (2001) 102-107
78. Hiroaki Y., Nishikawa K., Mitsuoka K., Tachibana T., Sobue K., Doi T., and Fujiyoshi Y. Biochem. Biophys. Res. Comm. (2002) 756-765
79. Rémigy H.-W., Caujolle-Bert D., Suda K., Schenk A., Chami M., and Engel A. FEBS Lett. 555 (2003) 160-169