메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

Bioinformatics analysis of the early inflammatory response in a rat thermal injury model

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS ANALYSIS; ENRICHMENT EVALUATION; GENE EXPRESSION PATTERNS; INTEGRATED FRAMEWORKS; MOLECULAR FINGERPRINT; PHYSIOLOGICAL RESPONSE; THERAPEUTIC INTERVENTION; TRANSCRIPTION NETWORKS;

EID: 33847139783     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-10     Document Type: Article
Times cited : (27)

References (88)
  • 1
  • 2
    • 0028095919 scopus 로고
    • The acute phase response
    • 7512342
    • Baumann H Gauldie J The acute phase response Immunol Today 1994 15 2 74-80 7512342
    • (1994) Immunol Today , vol.15 , Issue.2 , pp. 74-80
    • Baumann, H.1    Gauldie, J.2
  • 3
    • 84886758616 scopus 로고    scopus 로고
    • Metabolomic and DNA microarray analysis of liver metabolism in hypermetabolic and catabolic states: Austin, TX
    • Banta S Vemula M Yokoyama T Jayaraman A Berthiaume F Yarmush ML Metabolomic and DNA microarray analysis of liver metabolism in hypermetabolic and catabolic states: Austin, TX. 2004
    • (2004)
    • Banta, S.1    Vemula, M.2    Yokoyama, T.3    Jayaraman, A.4    Berthiaume, F.5    Yarmush, M.L.6
  • 4
    • 4844229870 scopus 로고    scopus 로고
    • Expression profiling analysis of the metabolic and inflammatory changes following burn injury in rats
    • 15114001
    • Vemula M Berthiaume F Jayaraman A Yarmush ML Expression profiling analysis of the metabolic and inflammatory changes following burn injury in rats Physiol Genomics 2004 18 1 87-98 15114001
    • (2004) Physiol Genomics , vol.18 , Issue.1 , pp. 87-98
    • Vemula, M.1    Berthiaume, F.2    Jayaraman, A.3    Yarmush, M.L.4
  • 9
    • 0742272503 scopus 로고    scopus 로고
    • A systems approach to dissecting immunity and inflammation
    • 14751764
    • Aderem A Smith KD A systems approach to dissecting immunity and inflammation Semin Immunol 2004 16 1 55-67 14751764
    • (2004) Semin Immunol , vol.16 , Issue.1 , pp. 55-67
    • Aderem, A.1    Smith, K.D.2
  • 10
    • 0036435213 scopus 로고    scopus 로고
    • Transcriptional and post-transcriptional control of gene expression in inflammation
    • 12453467
    • Kracht M Saklatvala J Transcriptional and post-transcriptional control of gene expression in inflammation Cytokine 2002 20 3 91-106 12453467
    • (2002) Cytokine , vol.20 , Issue.3 , pp. 91-106
    • Kracht, M.1    Saklatvala, J.2
  • 11
    • 16244394033 scopus 로고    scopus 로고
    • Comparison of inflammatory and acute-phase responses in the brain and peripheral organs of the ME7 model of prion disease
    • 1069550 15795301
    • Cunningham C Wilcockson DC Boche D Perry VH Comparison of inflammatory and acute-phase responses in the brain and peripheral organs of the ME7 model of prion disease J Virol 2005 79 8 5174-5184 1069550 15795301
    • (2005) J Virol , vol.79 , Issue.8 , pp. 5174-5184
    • Cunningham, C.1    Wilcockson, D.C.2    Boche, D.3    Perry, V.H.4
  • 13
    • 24944592397 scopus 로고    scopus 로고
    • Systemic inflammatory response to coronary artery bypass graft surgery
    • 16227195
    • Hess PJ Jr. Systemic inflammatory response to coronary artery bypass graft surgery Am J Health Syst Pharm 2005 62 18 Suppl 4 S6-9 16227195
    • (2005) Am J Health Syst Pharm , vol.62 , Issue.18 SUPPL. 4
    • Hess Jr., P.J.1
  • 14
    • 4444329021 scopus 로고    scopus 로고
    • Protective function of complement against alcohol-induced rat liver damage
    • 15351314
    • Bykov IL Vakeva A Jarvelainen HA Meri S Lindros KO Protective function of complement against alcohol-induced rat liver damage Int Immunopharmacol 2004 4 12 1445-1454 15351314
    • (2004) Int Immunopharmacol , vol.4 , Issue.12 , pp. 1445-1454
    • Bykov, I.L.1    Vakeva, A.2    Jarvelainen, H.A.3    Meri, S.4    Lindros, K.O.5
  • 16
    • 0033531932 scopus 로고    scopus 로고
    • The transcription factor CCAAT/enhancer-binding protein beta regulates gluconeogenesis and phosphoenolpyruvate carboxykinase (GTP) gene transcription during diabetes
    • 10224054
    • Arizmendi C Liu S Croniger C Poli V Friedman JE The transcription factor CCAAT/enhancer-binding protein beta regulates gluconeogenesis and phosphoenolpyruvate carboxykinase (GTP) gene transcription during diabetes J Biol Chem 1999 274 19 13033-13040 10224054
    • (1999) J Biol Chem , vol.274 , Issue.19 , pp. 13033-13040
    • Arizmendi, C.1    Liu, S.2    Croniger, C.3    Poli, V.4    Friedman, J.E.5
  • 17
    • 2642526262 scopus 로고    scopus 로고
    • Extended hypermetabolic response of the liver in severely burned pediatric patients
    • 15197091
    • Jeschke MG Barrow RE Herndon DN Extended hypermetabolic response of the liver in severely burned pediatric patients Arch Surg 2004 139 6 641-647 15197091
    • (2004) Arch Surg , vol.139 , Issue.6 , pp. 641-647
    • Jeschke, M.G.1    Barrow, R.E.2    Herndon, D.N.3
  • 18
    • 0016292807 scopus 로고
    • Catecholamines: Mediator of the hypermetabolic response to thermal injury
    • 1344163 4412350
    • Wilmore DW Long JM Mason AD Jr. Skreen RW Pruitt BA Jr. Catecholamines: mediator of the hypermetabolic response to thermal injury Ann Surg 1974 180 4 653-669 1344163 4412350
    • (1974) Ann Surg , vol.180 , Issue.4 , pp. 653-669
    • Wilmore, D.W.1    Long, J.M.2    Mason Jr., A.D.3    Skreen, R.W.4    Pruitt Jr., B.A.5
  • 19
    • 0035950685 scopus 로고    scopus 로고
    • Reversal of catabolism by beta-blockade after severe burns
    • 11680441
    • Herndon DN Hart DW Wolf SE Chinkes DL Wolfe RR Reversal of catabolism by beta-blockade after severe burns N Engl J Med 2001 345 17 1223-1229 11680441
    • (2001) N Engl J Med , vol.345 , Issue.17 , pp. 1223-1229
    • Herndon, D.N.1    Hart, D.W.2    Wolf, S.E.3    Chinkes, D.L.4    Wolfe, R.R.5
  • 20
    • 0024529117 scopus 로고
    • Structure and negative transcriptional regulation by glucocorticoids of the acute-phase rat alpha 1-inhibitor III gene
    • 2495816
    • Northemann W Shiels BR Braciak TA Fey GH Structure and negative transcriptional regulation by glucocorticoids of the acute-phase rat alpha 1-inhibitor III gene Biochemistry 1989 28 1 84-95 2495816
    • (1989) Biochemistry , vol.28 , Issue.1 , pp. 84-95
    • Northemann, W.1    Shiels, B.R.2    Braciak, T.A.3    Fey, G.H.4
  • 22
    • 24644450343 scopus 로고    scopus 로고
    • Systemic inflammation correlates with increased expression of skeletal muscle ubiquitin but not uncoupling proteins in cancer cachexia
    • 15944798
    • DeJong CH Busquets S Moses AG Schrauwen P Ross JA Argiles JM Fearon KC Systemic inflammation correlates with increased expression of skeletal muscle ubiquitin but not uncoupling proteins in cancer cachexia Oncol Rep 2005 14 1 257-263 15944798
    • (2005) Oncol Rep , vol.14 , Issue.1 , pp. 257-263
    • DeJong, C.H.1    Busquets, S.2    Moses, A.G.3    Schrauwen, P.4    Ross, J.A.5    Argiles, J.M.6    Fearon, K.C.7
  • 24
    • 4644366900 scopus 로고    scopus 로고
    • Frontline: Interferon regulatory factor-1 as a protective gene in intestinal inflammation: Role of TCR gamma delta T cells and interleukin-18-binding protein
    • 15307168
    • Siegmund B Sennello JA Lehr HA Senaldi G Dinarello CA Fantuzzi G Frontline: Interferon regulatory factor-1 as a protective gene in intestinal inflammation: Role of TCR gamma delta T cells and interleukin-18-binding protein Eur J Immunol 2004 34 9 2356-2364 15307168
    • (2004) Eur J Immunol , vol.34 , Issue.9 , pp. 2356-2364
    • Siegmund, B.1    Sennello, J.A.2    Lehr, H.A.3    Senaldi, G.4    Dinarello, C.A.5    Fantuzzi, G.6
  • 25
    • 30144433188 scopus 로고    scopus 로고
    • Roles of Ras and extracellular signal-regulated kinase-dependent IkappaBalpha degradation in oridonin-enhanced phagocytosis of apoptotic cells by human macrophage-like U937 cells
    • 16399631
    • Liu YQ You S Tashiro S Onodera S Ikejima T Roles of Ras and extracellular signal-regulated kinase-dependent IkappaBalpha degradation in oridonin-enhanced phagocytosis of apoptotic cells by human macrophage-like U937 cells Int Immunopharmacol 2006 6 2 260-268 16399631
    • (2006) Int Immunopharmacol , vol.6 , Issue.2 , pp. 260-268
    • Liu, Y.Q.1    You, S.2    Tashiro, S.3    Onodera, S.4    Ikejima, T.5
  • 26
    • 33646542986 scopus 로고    scopus 로고
    • Controlling the cytokine storm by insulin: Glycogen synthase kinase-3 as a target in systemic inflammation
    • 16633265
    • Muhl H Pfeilschifter J Controlling the cytokine storm by insulin: glycogen synthase kinase-3 as a target in systemic inflammation Crit Care Med 2006 34 5 1567-1569 16633265
    • (2006) Crit Care Med , vol.34 , Issue.5 , pp. 1567-1569
    • Muhl, H.1    Pfeilschifter, J.2
  • 29
    • 0345600809 scopus 로고    scopus 로고
    • Nutritional support for wound healing
    • 14653765
    • MacKay D Miller AL Nutritional support for wound healing Altern Med Rev 2003 8 4 359-377 14653765
    • (2003) Altern Med Rev , vol.8 , Issue.4 , pp. 359-377
    • MacKay, D.1    Miller, A.L.2
  • 30
    • 0036739031 scopus 로고    scopus 로고
    • Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes
    • 186658 12213778
    • Jegga AG Sherwood SP Carman JW Pinski AT Phillips JL Pestian JP Aronow BJ Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes Genome Res 2002 12 9 1408-1417 186658 12213778
    • (2002) Genome Res , vol.12 , Issue.9 , pp. 1408-1417
    • Jegga, A.G.1    Sherwood, S.P.2    Carman, J.W.3    Pinski, A.T.4    Phillips, J.L.5    Pestian, J.P.6    Aronow, B.J.7
  • 31
    • 21344474796 scopus 로고    scopus 로고
    • Review: Hypoxia-inducible factor-1 (HIF-1): A novel transcription factor in immune reactions
    • 15957953
    • Hellwig-Burgel T Stiehl DP Wagner AE Metzen E Jelkmann W Review: hypoxia-inducible factor-1 (HIF-1): A novel transcription factor in immune reactions J Interferon Cytokine Res 2005 25 6 297-310 15957953
    • (2005) J Interferon Cytokine Res , vol.25 , Issue.6 , pp. 297-310
    • Hellwig-Burgel, T.1    Stiehl, D.P.2    Wagner, A.E.3    Metzen, E.4    Jelkmann, W.5
  • 32
    • 0028022892 scopus 로고
    • Oncogene expression in hepatocytes of the fish Rivulus ocellatus marmoratus during the necrotic and regenerative phases of diethylnitrosamine toxicity
    • 7923594
    • Goodwin AE Grizzle JM Oncogene expression in hepatocytes of the fish Rivulus ocellatus marmoratus during the necrotic and regenerative phases of diethylnitrosamine toxicity Carcinogenesis 1994 15 9 1985-1992 7923594
    • (1994) Carcinogenesis , vol.15 , Issue.9 , pp. 1985-1992
    • Goodwin, A.E.1    Grizzle, J.M.2
  • 33
    • 3042795223 scopus 로고    scopus 로고
    • Physiological and pathological consequences of the interactions of the p53 tumor suppressor with the glucocorticoid, androgen, and estrogen receptors
    • 15265773
    • Sengupta S Wasylyk B Physiological and pathological consequences of the interactions of the p53 tumor suppressor with the glucocorticoid, androgen, and estrogen receptors Ann N Y Acad Sci 2004 1024 54-71 15265773
    • (2004) Ann N Y Acad Sci , vol.1024 , pp. 54-71
    • Sengupta, S.1    Wasylyk, B.2
  • 35
    • 0037119452 scopus 로고    scopus 로고
    • Negative regulation of bone morphogenetic protein/Smad signaling by Cas-interacting zinc finger protein in osteoblasts
    • 12023967
    • Shen ZJ Nakamoto T Tsuji K Nifuji A Miyazono K Komori T Hirai H Noda M Negative regulation of bone morphogenetic protein/Smad signaling by Cas-interacting zinc finger protein in osteoblasts J Biol Chem 2002 277 33 29840-29846 12023967
    • (2002) J Biol Chem , vol.277 , Issue.33 , pp. 29840-29846
    • Shen, Z.J.1    Nakamoto, T.2    Tsuji, K.3    Nifuji, A.4    Miyazono, K.5    Komori, T.6    Hirai, H.7    Noda, M.8
  • 36
    • 14944348442 scopus 로고    scopus 로고
    • The aryl hydrocarbon receptor predisposes hepatocytes to Fas-mediated apoptosis
    • 15550680
    • Park KT Mitchell KA Huang G Elferink CJ The aryl hydrocarbon receptor predisposes hepatocytes to Fas-mediated apoptosis Mol Pharmacol 2005 67 3 612-622 15550680
    • (2005) Mol Pharmacol , vol.67 , Issue.3 , pp. 612-622
    • Park, K.T.1    Mitchell, K.A.2    Huang, G.3    Elferink, C.J.4
  • 37
    • 17144388612 scopus 로고    scopus 로고
    • Evaluation of an in vitro model of hepatic inflammatory response by gene expression profiling
    • 15738661
    • Jayaraman A Yarmush ML Roth CM Evaluation of an in vitro model of hepatic inflammatory response by gene expression profiling Tissue Eng 2005 11 1-2 50-63 15738661
    • (2005) Tissue Eng , vol.11 , Issue.1-2 , pp. 50-63
    • Jayaraman, A.1    Yarmush, M.L.2    Roth, C.M.3
  • 38
    • 25444476441 scopus 로고    scopus 로고
    • Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
    • 1239911 16162296
    • Wolfe CJ Kohane IS Butte AJ Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks BMC Bioinformatics 2005 6 227 1239911 16162296
    • (2005) BMC Bioinformatics , vol.6 , pp. 227
    • Wolfe, C.J.1    Kohane, I.S.2    Butte, A.J.3
  • 39
    • 28244489613 scopus 로고    scopus 로고
    • The octamer binding transcription factor Oct-1 is a stress sensor
    • 16322220
    • Tantin D Schild-Poulter C Wang V Hache RJ Sharp PA The octamer binding transcription factor Oct-1 is a stress sensor Cancer Res 2005 65 23 10750-10758 16322220
    • (2005) Cancer Res , vol.65 , Issue.23 , pp. 10750-10758
    • Tantin, D.1    Schild-Poulter, C.2    Wang, V.3    Hache, R.J.4    Sharp, P.A.5
  • 40
    • 0025220995 scopus 로고
    • Activation of octamer-containing promoters by either octamer-binding transcription factor 1 (OTF-1) or OTF-2 and requirement of an additional B-cell-specific component for optimal transcription of immunoglobulin promoters
    • 362895 2123291
    • Pierani A Heguy A Fujii H Roeder RG Activation of octamer-containing promoters by either octamer-binding transcription factor 1 (OTF-1) or OTF-2 and requirement of an additional B-cell-specific component for optimal transcription of immunoglobulin promoters Mol Cell Biol 1990 10 12 6204-6215 362895 2123291
    • (1990) Mol Cell Biol , vol.10 , Issue.12 , pp. 6204-6215
    • Pierani, A.1    Heguy, A.2    Fujii, H.3    Roeder, R.G.4
  • 41
    • 11244353490 scopus 로고    scopus 로고
    • Multiple mechanisms are involved in Ah receptor-mediated cell cycle arrest
    • 15492120
    • Huang G Elferink CJ Multiple mechanisms are involved in Ah receptor-mediated cell cycle arrest Mol Pharmacol 2005 67 1 88-96 15492120
    • (2005) Mol Pharmacol , vol.67 , Issue.1 , pp. 88-96
    • Huang, G.1    Elferink, C.J.2
  • 42
    • 33644663235 scopus 로고    scopus 로고
    • Kruppel-like factor 4 is a mediator of proinflammatory signaling in macrophages
    • 16169848
    • Feinberg MW Cao Z Wara AK Lebedeva MA Senbanerjee S Jain MK Kruppel-like factor 4 is a mediator of proinflammatory signaling in macrophages J Biol Chem 2005 280 46 38247-38258 16169848
    • (2005) J Biol Chem , vol.280 , Issue.46 , pp. 38247-38258
    • Feinberg, M.W.1    Cao, Z.2    Wara, A.K.3    Lebedeva, M.A.4    Senbanerjee, S.5    Jain, M.K.6
  • 43
    • 0035823264 scopus 로고    scopus 로고
    • The small world inside large metabolic networks
    • 11522199
    • Wagner A Fell DA The small world inside large metabolic networks Proc Biol Sci 2001 268 1478 1803-1810 11522199
    • (2001) Proc Biol Sci , vol.268 , Issue.1478 , pp. 1803-1810
    • Wagner, A.1    Fell, D.A.2
  • 44
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • 10935628
    • Albert R Jeong H Barabasi AL Error and attack tolerance of complex networks Nature 2000 406 6794 378-382 10935628
    • (2000) Nature , vol.406 , Issue.6794 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabasi, A.L.3
  • 45
    • 33744957050 scopus 로고    scopus 로고
    • Nuclear export of retinoid X receptor alpha in response to interleukin-1beta-mediated cell signaling: Roles for JNK and SER260
    • 16551633
    • Zimmerman TL Thevananther S Ghose R Burns AR Karpen SJ Nuclear export of retinoid X receptor alpha in response to interleukin-1beta-mediated cell signaling: Roles for JNK and SER260 J Biol Chem 2006 281 22 15434-15440 16551633
    • (2006) J Biol Chem , vol.281 , Issue.22 , pp. 15434-15440
    • Zimmerman, T.L.1    Thevananther, S.2    Ghose, R.3    Burns, A.R.4    Karpen, S.J.5
  • 47
    • 0034454903 scopus 로고    scopus 로고
    • The roles of prolactin, growth hormone, insulin-like growth factor-I, and thyroid hormones in lymphocyte development and function: Insights from genetic models of hormone and hormone receptor deficiency
    • 10857555
    • Dorshkind K Horseman ND The roles of prolactin, growth hormone, insulin-like growth factor-I, and thyroid hormones in lymphocyte development and function: Insights from genetic models of hormone and hormone receptor deficiency Endocr Rev 2000 21 3 292-312 10857555
    • (2000) Endocr Rev , vol.21 , Issue.3 , pp. 292-312
    • Dorshkind, K.1    Horseman, N.D.2
  • 48
    • 0035112443 scopus 로고    scopus 로고
    • Anterior pituitary hormones, stress, and immune system homeostasis
    • 11223886
    • Dorshkind K Horseman ND Anterior pituitary hormones, stress, and immune system homeostasis Bioessays 2001 23 3 288-294 11223886
    • (2001) Bioessays , vol.23 , Issue.3 , pp. 288-294
    • Dorshkind, K.1    Horseman, N.D.2
  • 49
    • 33745700456 scopus 로고    scopus 로고
    • Differential influence of p38 mitogen activated protein kinase (MAPK) inhibition on acute phase protein synthesis in human hepatoma cell lines
    • 16269426
    • Westra J Bijzet J Doornbos-van der Meer B van Rijswijk MH Limburg PC Differential influence of p38 mitogen activated protein kinase (MAPK) inhibition on acute phase protein synthesis in human hepatoma cell lines Ann Rheum Dis 2006 65 7 929-935 16269426
    • (2006) Ann Rheum Dis , vol.65 , Issue.7 , pp. 929-935
    • Westra, J.1    Bijzet, J.2    Doornbos-van der Meer, B.3    van Rijswijk, M.H.4    Limburg, P.C.5
  • 50
    • 0037072796 scopus 로고    scopus 로고
    • Interleukin-22 (IL-22) activates the JAK/STAT, ERK, JNK, and p38 MAP kinase pathways in a rat hepatoma cell line. Pathways that are shared with and distinct from IL-10
    • 12087100
    • Lejeune D Dumoutier L Constantinescu S Kruijer W Schuringa JJ Renauld JC Interleukin-22 (IL-22) activates the JAK/STAT, ERK, JNK, and p38 MAP kinase pathways in a rat hepatoma cell line. Pathways that are shared with and distinct from IL-10 J Biol Chem 2002 277 37 33676-33682 12087100
    • (2002) J Biol Chem , vol.277 , Issue.37 , pp. 33676-33682
    • Lejeune, D.1    Dumoutier, L.2    Constantinescu, S.3    Kruijer, W.4    Schuringa, J.J.5    Renauld, J.C.6
  • 51
    • 0036659520 scopus 로고    scopus 로고
    • Inhibition of IL-6 signaling by a p38-dependent pathway occurs in the absence of new protein synthesis
    • 12101275
    • Ahmed ST Mayer A Ji JD Ivashkiv LB Inhibition of IL-6 signaling by a p38-dependent pathway occurs in the absence of new protein synthesis J Leukoc Biol 2002 72 1 154-162 12101275
    • (2002) J Leukoc Biol , vol.72 , Issue.1 , pp. 154-162
    • Ahmed, S.T.1    Mayer, A.2    Ji, J.D.3    Ivashkiv, L.B.4
  • 52
    • 0033166416 scopus 로고    scopus 로고
    • Stress activated protein kinase p38 is involved in IL-6 induced transcriptional activation of STAT3
    • 10445852
    • Zauberman A Zipori D Krupsky M Ben-Levy R Stress activated protein kinase p38 is involved in IL-6 induced transcriptional activation of STAT3 Oncogene 1999 18 26 3886-3893 10445852
    • (1999) Oncogene , vol.18 , Issue.26 , pp. 3886-3893
    • Zauberman, A.1    Zipori, D.2    Krupsky, M.3    Ben-Levy, R.4
  • 53
    • 14944338727 scopus 로고    scopus 로고
    • p38 mitogen-activated protein kinase inhibition attenuates burn-induced liver injury in rats
    • 15774288
    • Chen XL Xia ZF Yu YX Wei D Wang CR Ben DF p38 mitogen-activated protein kinase inhibition attenuates burn-induced liver injury in rats Burns 2005 31 3 320-330 15774288
    • (2005) Burns , vol.31 , Issue.3 , pp. 320-330
    • Chen, X.L.1    Xia, Z.F.2    Yu, Y.X.3    Wei, D.4    Wang, C.R.5    Ben, D.F.6
  • 54
    • 33646344978 scopus 로고    scopus 로고
    • STEM: A tool for the analysis of short time series gene expression data
    • 1456994 16597342
    • Ernst J Bar-Joseph Z STEM: A tool for the analysis of short time series gene expression data BMC Bioinformatics 2006 7 1 191 1456994 16597342
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 191
    • Ernst, J.1    Bar-Joseph, Z.2
  • 56
    • 0036798238 scopus 로고    scopus 로고
    • Judging the quality of gene expression-based clustering methods using gene annotation
    • 187526 12368250
    • Gibbons FD Roth FP Judging the quality of gene expression-based clustering methods using gene annotation Genome Res 2002 12 10 1574-1581 187526 12368250
    • (2002) Genome Res , vol.12 , Issue.10 , pp. 1574-1581
    • Gibbons, F.D.1    Roth, F.P.2
  • 57
    • 19544366640 scopus 로고    scopus 로고
    • A knowledge-driven approach to cluster validity assessment
    • 15713738
    • Bolshakova N Azuaje F Cunningham P A knowledge-driven approach to cluster validity assessment Bioinformatics 2005 21 10 2546-2547 15713738
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2546-2547
    • Bolshakova, N.1    Azuaje, F.2    Cunningham, P.3
  • 58
    • 8844277626 scopus 로고    scopus 로고
    • Analyzing time series gene expression data
    • 15130923
    • Bar-Joseph Z Analyzing time series gene expression data Bioinformatics 2004 20 16 2493-2503 15130923
    • (2004) Bioinformatics , vol.20 , Issue.16 , pp. 2493-2503
    • Bar-Joseph, Z.1
  • 60
    • 0035861975 scopus 로고    scopus 로고
    • Beyond synexpression relationships: Local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions
    • 11743722
    • Qian J Dolled-Filhart M Lin J Yu H Gerstein M Beyond synexpression relationships: Local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions J Mol Biol 2001 314 5 1053-1066 11743722
    • (2001) J Mol Biol , vol.314 , Issue.5 , pp. 1053-1066
    • Qian, J.1    Dolled-Filhart, M.2    Lin, J.3    Yu, H.4    Gerstein, M.5
  • 61
    • 0037047161 scopus 로고    scopus 로고
    • Cluster analysis of gene expression dynamics
    • 123104 12082179
    • Ramoni MF Sebastiani P Kohane IS Cluster analysis of gene expression dynamics Proc Natl Acad Sci U S A 2002 99 14 9121-9126 123104 12082179
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.14 , pp. 9121-9126
    • Ramoni, M.F.1    Sebastiani, P.2    Kohane, I.S.3
  • 62
    • 37049018699 scopus 로고    scopus 로고
    • Clustering time-varying gene expression profiles using scale-space signals
    • 16452778
    • Syeda-Mahmood T Clustering time-varying gene expression profiles using scale-space signals IEEE Computer Society 2003 16452778
    • (2003) IEEE Computer Society
    • Syeda-Mahmood, T.1
  • 64
    • 3543069887 scopus 로고    scopus 로고
    • The genomic response of skeletal muscle to methylprednisolone using microarrays: Tailoring data mining to the structure of the pharmacogenomic time series
    • 15212590
    • Almon RR DuBois DC Piel WH Jusko WJ The genomic response of skeletal muscle to methylprednisolone using microarrays: Tailoring data mining to the structure of the pharmacogenomic time series Pharmacogenomics 2004 5 5 525-552 15212590
    • (2004) Pharmacogenomics , vol.5 , Issue.5 , pp. 525-552
    • Almon, R.R.1    DuBois, D.C.2    Piel, W.H.3    Jusko, W.J.4
  • 65
    • 18144408736 scopus 로고    scopus 로고
    • Cell fates fo hih-dimensional attractor states of a complex regulatory network
    • 15903968
    • Huang S Eichler G Bar-Yam Y Ingber DE Cell fates fo hih-dimensional attractor states of a complex regulatory network Physical Review Letters 2005 94 128701 15903968
    • (2005) Physical Review Letters , vol.94 , pp. 128701
    • Huang, S.1    Eichler, G.2    Bar-Yam, Y.3    Ingber, D.E.4
  • 66
    • 0344464733 scopus 로고    scopus 로고
    • Gene Expression Dynamics Inspector (GEDI): For integrative analysis of expression profiles
    • 14630665
    • Eichler GS Huang S Ingber DE Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles Bioinformatics 2003 19 17 2321-2322 14630665
    • (2003) Bioinformatics , vol.19 , Issue.17 , pp. 2321-2322
    • Eichler, G.S.1    Huang, S.2    Ingber, D.E.3
  • 67
    • 18144408736 scopus 로고    scopus 로고
    • Cell fates as high-dimensional attractor states of a complex gene regulatory network
    • 15903968
    • Huang S Eichler G Bar-Yam Y Ingber DE Cell fates as high-dimensional attractor states of a complex gene regulatory network Phys Rev Lett 2005 94 12 128701 15903968
    • (2005) Phys Rev Lett , vol.94 , Issue.12 , pp. 128701
    • Huang, S.1    Eichler, G.2    Bar-Yam, Y.3    Ingber, D.E.4
  • 68
    • 84886762281 scopus 로고    scopus 로고
    • Clustering of Time Series Subsequences is Meaningless: Implications for Past and Future Research: Melborne, FL
    • Keogh E Lin J Trupple W Clustering of Time Series Subsequences is Meaningless: Implications for Past and Future Research: Melborne, FL. IEEE 2003
    • (2003) IEEE
    • Keogh, E.1    Lin, J.2    Trupple, W.3
  • 69
    • 84874245234 scopus 로고    scopus 로고
    • HOT SAX: Efficiently finding the most unusual time series subsequences
    • Keogh E Lin J Fu A HOT SAX: Efficiently finding the most unusual time series subsequences 2005
    • (2005)
    • Keogh, E.1    Lin, J.2    Fu, A.3
  • 71
    • 2442567436 scopus 로고    scopus 로고
    • Mining Motifs in Massive Time Series Databases
    • Patel P Keogh E Lin J Lonardi S Mining Motifs in Massive Time Series Databases ICDM 2002 2002 370-377
    • (2002) ICDM 2002 , pp. 370-377
    • Patel, P.1    Keogh, E.2    Lin, J.3    Lonardi, S.4
  • 72
    • 0034351492 scopus 로고    scopus 로고
    • Kolmogorov-Smirnov statistic and its application in library design
    • 11143556
    • Rassokhin DN Agrafiotis DK Kolmogorov-Smirnov statistic and its application in library design J Mol Graph Model 2000 18 4-5 368-382 11143556
    • (2000) J Mol Graph Model , vol.18 , Issue.4-5 , pp. 368-382
    • Rassokhin, D.N.1    Agrafiotis, D.K.2
  • 75
    • 0242559054 scopus 로고    scopus 로고
    • Pathway studio--the analysis and navigation of molecular networks
    • 14594725
    • Nikitin A Egorov S Daraselia N Mazo I Pathway studio--the analysis and navigation of molecular networks Bioinformatics 2003 19 16 2155-2157 14594725
    • (2003) Bioinformatics , vol.19 , Issue.16 , pp. 2155-2157
    • Nikitin, A.1    Egorov, S.2    Daraselia, N.3    Mazo, I.4
  • 76
    • 24344444969 scopus 로고    scopus 로고
    • The Architecture of Biological Networks
    • Kluwer Academic Publishers Deisboek TS, Kresh JS, Kepler TB
    • Wuchty S Ravasz E Barabasi AL The Architecture of Biological Networks Complex Systems in Biomedicine Kluwer Academic Publishers Deisboek TS, Kresh JS, Kepler TB 2003
    • (2003) Complex Systems in Biomedicine
    • Wuchty, S.1    Ravasz, E.2    Barabasi, A.L.3
  • 77
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • 14735121
    • Barabasi AL Oltvai ZN Network biology: Understanding the cell's functional organization Nat Rev Genet 2004 5 2 101-113 14735121
    • (2004) Nat Rev Genet , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 78
    • 9344230857 scopus 로고    scopus 로고
    • Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription
    • 534520 15545604
    • Alter O Golub GH Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription Proc Natl Acad Sci U S A 2004 101 47 16577-16582 534520 15545604
    • (2004) Proc Natl Acad Sci U S A , vol.101 , Issue.47 , pp. 16577-16582
    • Alter, O.1    Golub, G.H.2
  • 79
    • 13544254744 scopus 로고    scopus 로고
    • Identifying combinatorial regulation of transcription factors and binding motifs
    • 507881 15287978
    • Kato M Hata N Banerjee N Futcher B Zhang MQ Identifying combinatorial regulation of transcription factors and binding motifs Genome Biol 2004 5 8 R56 507881 15287978
    • (2004) Genome Biol , vol.5 , Issue.8
    • Kato, M.1    Hata, N.2    Banerjee, N.3    Futcher, B.4    Zhang, M.Q.5
  • 80
    • 2942582468 scopus 로고    scopus 로고
    • Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    • 407845 15113405
    • Gao F Foat BC Bussemaker HJ Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data BMC Bioinformatics 2004 5 31 407845 15113405
    • (2004) BMC Bioinformatics , vol.5 , pp. 31
    • Gao, F.1    Foat, B.C.2    Bussemaker, H.J.3
  • 81
    • 23744491001 scopus 로고    scopus 로고
    • Predicting transcription factor activities from combined analysis of microarray and ChIP data: A partial least squares approach
    • 1182396 15978125
    • Boulesteix AL Strimmer K Predicting transcription factor activities from combined analysis of microarray and ChIP data: A partial least squares approach Theor Biol Med Model 2005 2 23 1182396 15978125
    • (2005) Theor Biol Med Model , vol.2 , pp. 23
    • Boulesteix, A.L.1    Strimmer, K.2
  • 82
    • 0033657261 scopus 로고    scopus 로고
    • Principal components analysis to summarize microarray experiments: Application to sporulation time series
    • 10902193
    • Raychaudhuri S Stuart JM Altman RB Principal components analysis to summarize microarray experiments: Application to sporulation time series Pac Symp Biocomput 2000 455-466 10902193
    • (2000) Pac Symp Biocomput , pp. 455-466
    • Raychaudhuri, S.1    Stuart, J.M.2    Altman, R.B.3
  • 83
    • 0037197936 scopus 로고    scopus 로고
    • Reverse engineering gene networks using singular value decomposition and robust regression
    • 122920 11983907
    • Yeung MK Tegner J Collins JJ Reverse engineering gene networks using singular value decomposition and robust regression Proc Natl Acad Sci U S A 2002 99 9 6163-6168 122920 11983907
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.9 , pp. 6163-6168
    • Yeung, M.K.1    Tegner, J.2    Collins, J.J.3
  • 84
    • 0345743695 scopus 로고    scopus 로고
    • Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis
    • 327201 14694202
    • Kao KC Yang YL Boscolo R Sabatti C Roychowdhury V Liao JC Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis Proc Natl Acad Sci U S A 2004 101 2 641-646 327201 14694202
    • (2004) Proc Natl Acad Sci U S A , vol.101 , Issue.2 , pp. 641-646
    • Kao, K.C.1    Yang, Y.L.2    Boscolo, R.3    Sabatti, C.4    Roychowdhury, V.5    Liao, J.C.6
  • 85
    • 0345824737 scopus 로고    scopus 로고
    • Network component analysis: Reconstruction of regulatory signals in biological systems
    • 307600 14673099
    • Liao JC Boscolo R Yang YL Tran LM Sabatti C Roychowdhury VP Network component analysis: Reconstruction of regulatory signals in biological systems Proc Natl Acad Sci U S A 2003 100 26 15522-15527 307600 14673099
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.26 , pp. 15522-15527
    • Liao, J.C.1    Boscolo, R.2    Yang, Y.L.3    Tran, L.M.4    Sabatti, C.5    Roychowdhury, V.P.6
  • 86
    • 21644438085 scopus 로고    scopus 로고
    • Biosignal and biomedical image processing: MATLAB-based applications
    • New York, London, Marcel Dekker; Taylor & Francis
    • Semmlow JL Biosignal and biomedical image processing: MATLAB-based applications New York, London, Marcel Dekker; Taylor & Francis 2004 xviii, 423 p.
    • (2004) , vol.18 , pp. 423
    • Semmlow, J.L.1
  • 87
    • 15244338624 scopus 로고    scopus 로고
    • gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical implementation
    • 15781421
    • Tran LM Brynildsen MP Kao KC Suen JK Liao JC gNCA: A framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation Metab Eng 2005 7 2 128-141 15781421
    • (2005) Metab Eng , vol.7 , Issue.2 , pp. 128-141
    • Tran, L.M.1    Brynildsen, M.P.2    Kao, K.C.3    Suen, J.K.4    Liao, J.C.5
  • 88
    • 77956727154 scopus 로고    scopus 로고
    • An integrative systems biology approach for analyzing liver hypermetabolism: Garmisch-Partenkirchen/Germany
    • Elsevier Marquardt W, Pantelides C
    • Yang E Berthiaume F Yarmush ML Androulakis IP An integrative systems biology approach for analyzing liver hypermetabolism: Garmisch-Partenkirchen/Germany. Elsevier Marquardt W, Pantelides C 2006 1655-1660
    • (2006) , pp. 1655-1660
    • Yang, E.1    Berthiaume, F.2    Yarmush, M.L.3    Androulakis, I.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.