Region 3.2 of the σ subunit contributes to the binding of the 3′-initiating nucleotide in the RNA polymerase active center and facilitates promoter clearance during initiation

Journal of Biological Chemistry

Volumn 281, Issue 27, 2006, Pages 18273-18276

  Kulbachinskiy, Andrey ^a,b   Mustaev, Arkady ^c  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

^b RUTGERS UNIVERSITY   (United States)

^c PUBLIC HEALTH RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; BIOSYNTHESIS; ESCHERICHIA COLI; RNA;

MUTATION; NUCLEOTIDES; RNA POLYMERASE ACTIVE CENTER; TRANSCRIPTION INITIATION;

ENZYMES;

AMINO ACID; NUCLEOTIDE; RNA POLYMERASE;

ARTICLE; ESCHERICHIA COLI; GENE MUTATION; IN VITRO STUDY; NONHUMAN; NUCLEOTIDE BINDING SITE; PRIORITY JOURNAL; PROMOTER REGION; RNA SYNTHESIS; TRANSCRIPTION INITIATION; WILD TYPE;

BINDING SITES; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; MODELS, MOLECULAR; PROMOTER REGIONS (GENETICS); SEQUENCE DELETION; SIGMA FACTOR; STRUCTURE-ACTIVITY RELATIONSHIP; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 33745832269     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.C600060200     Document Type: Article

References (23)

1. Gross, C. A., Chan, C., Dombroski, A., Gruber, T., Sharp, M., Tupy, J., and Young, B. (1998) Cold Spring Harb. Symp. Quant. Biol. 63, 141-155
2. Campbell, E. A., Muzzin, O., Chlenov, M., Sun, J. L., Olson, C. A., Weinman, O., Trester-Zedlitz, M. L., and Darst, S. A. (2002) Mol. Cell 9, 527-539
3. Vassylyev, D. G., Sekine, S., Laptenko, O., Lee, J., Vassylyeva, M. N., Borukhov, S., and Yokoyama, S. (2002) Nature 417, 712-719
4. Murakami, K. S., Masuda, S., Campbell, E. A., Muzzin, O., and Darst, S. A. (2002) Science 296, 1285-1290
5. Kuznedelov, K., Minakhin, L., Niedziela-Majka, A., Dove, S. L., Rogulja, D., Nickels, B. E., Hochschild, A., Heyduk, T., and Severinov, K. (2002) Science 295, 855-857
6. Murakami, K. S., Masuda, S., and Darst, S. A. (2002) Science 296, 1280-1284
7. Young, B. A., Gruber, T. M., and Gross, C. A. (2002) Cell 109, 417-420
8. Severinov, K., Fenyo, D., Severinova, E., Mustaev, A., Chait, B. T., Goldfarb, A., and Darst, S. A. (1994) J. Biol. Chem. 269, 20826-20828
9. Murakami, K. S., and Darst, S. A. (2003) Curr. Opin. Struct. Biol. 13, 31-39
10. Bushnell, D. A., Westover, K. D., Davis, R. E., and Kornberg, R. D. (2004) Science 303, 983-988
11. Boeger, H., Bushnell, D. A., Davis, R., Griesenbeck, J., Lorch, Y., Strattan, J. S., Westover, K. D., and Kornberg, R. D. (2005) FEBS Lett. 579, 899-903
12. Pal, M., Ponticelli, A. S., and Luse, D. S. (2005) Mol. Cell 19, 101-110
13. Borukhov, S., and Goldfarb, A. (1993) Protein Expression Purif. 4, 503-511
14. Kashlev, M., Martin, E., Polyakov, A., Severinov, K., Nikiforov, V., and Goldfarb, A. (1993) Gene (Amst.) 130, 9-14
15. Minakhin, L., and Severinov, K. (2003) J. Biol. Chem. 278, 29710-29718
16. Naryshkina, T., Mustaev, A., Darst, S. A., and Severinov, K. (2001) J. Biol. Chem. 276, 13308-13313
17. Severinov, K., Mustaev, A., Severinova, E., Kozlov, M., Darst, S. A., and Goldfarb, A. (1995) J. Biol. Chem. 270, 29428-29432
18. Artsimovitch, I., Patlan, V., Sekine, S., Vassylyeva, M. N., Hosaka, T., Ochi, K., Yokoyama, S., and Vassylyev, D. G. (2004) Cell 117, 299-310
19. Artsimovitch, I., Vassylyeva, M. N., Svetlov, D., Svetlov, V., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Tahirov, T. H., and Vassylyev, D. G. (2005) Cell 122, 351-363
20. Hsu, L. M., Vo, N. V., and Chamberlin, M. J. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 11588-11592
21. Hernandez, V. J., Hsu, L. M., and Cashel, M. (1996) J. Biol. Chem. 271, 18775-18779
22. Nickels, B. E., Garrity, S. J., Mekler, V., Minakhin, L., Severinov, K., Ebright, R. H., and Hochschild, A. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 4488-4493
23. Zenkin, N., and Severinov, K. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 4396-4400