메뉴 건너뛰기




Volumn 7 VOLS, Issue , 2005, Pages 6064-6067

Development of a grid-based statistical potential for protein structure prediction

Author keywords

Grid based statistical potential; Local coordinate system; Spatial propensity; Structure prediction

Indexed keywords

AMINO ACIDS; APPROXIMATION THEORY; MOLECULAR STRUCTURE; STATISTICAL METHODS;

EID: 33846933343     PISSN: 05891019     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (2)

References (15)
  • 1
    • 0031307019 scopus 로고    scopus 로고
    • Evaluation of comparative protein structure modeling by MODELLER-3
    • R. Sonchez and A. Sali, "Evaluation of comparative protein structure modeling by MODELLER-3," Proteins: Structure, Function, and Genetics, vol. 29, pp. 50-58, 1997.
    • (1997) Proteins: Structure, Function, and Genetics , vol.29 , pp. 50-58
    • Sonchez, R.1    Sali, A.2
  • 2
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • D. Baker and A. Sali, "Protein structure prediction and structural genomics," Science, vol. 294, pp. 93-96, 2001.
    • (2001) Science , vol.294 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 3
    • 0035964191 scopus 로고    scopus 로고
    • TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints
    • D. Kihara, H. Lu, A. Kolinski, and J. Skolnick, "TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints," Proceedings of National Academy of Sciences (USA), vol. 98, pp. 10125-10130, 2001
    • (2001) Proceedings of National Academy of Sciences (USA) , vol.98 , pp. 10125-10130
    • Kihara, D.1    Lu, H.2    Kolinski, A.3    Skolnick, J.4
  • 4
    • 0034663738 scopus 로고    scopus 로고
    • Protein threading using PROSPECT: Design and evaluation
    • Y. Xu and D. Xu, "Protein threading using PROSPECT: Design and evaluation," Proteins: Structure, Function, and Genetics, vol. 40, pp.343-354, 2000
    • (2000) Proteins: Structure, Function, and Genetics , vol.40 , pp. 343-354
    • Xu, Y.1    Xu, D.2
  • 5
    • 0032488962 scopus 로고    scopus 로고
    • An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction
    • Samudrala, R. and Moult, J. "An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction" J. Mol. Biol. 275:895-916, 1998
    • (1998) J. Mol. Biol , vol.275 , pp. 895-916
    • Samudrala, R.1    Moult, J.2
  • 6
    • 0035882533 scopus 로고    scopus 로고
    • A distance-dependent atomic knowledge-based potential for improved protein structure selection
    • Hui Lu and Jeffrey Skolnick "A distance-dependent atomic knowledge-based potential for improved protein structure selection" Proteins 44:223-232, 2001
    • (2001) Proteins , vol.44 , pp. 223-232
    • Hui, L.1    Skolnick, J.2
  • 7
    • 0037340493 scopus 로고    scopus 로고
    • Development of unified statistical potentials describing protein-protein interactions
    • Hui Lu, Long Lu, and Jeffrey Skolnick "Development of unified statistical potentials describing protein-protein interactions" Biophysical journal 84: 1895-1901, 2003
    • (2003) Biophysical journal , vol.84 , pp. 1895-1901
    • Hui, L.1    Long, L.2    Skolnick, J.3
  • 8
    • 0036838311 scopus 로고    scopus 로고
    • Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
    • Hongyi Zhou and Yaoqi Zhao "Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction" Protein Science 11:2714-2726, 2002
    • (2002) Protein Science , vol.11 , pp. 2714-2726
    • Zhou, H.1    Zhao, Y.2
  • 9
    • 1642534609 scopus 로고    scopus 로고
    • An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state
    • Chi Zhang, Song Liu, Hongyi Zhou, and Yaoqi Zhou "An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state" Protein Science 13:400-411, 2004
    • (2004) Protein Science , vol.13 , pp. 400-411
    • Zhang, C.1    Liu, S.2    Zhou, H.3    Zhou, Y.4
  • 10
    • 0033120215 scopus 로고    scopus 로고
    • Structure-based prediction of DNA target sites by regulatory proteins
    • Hidetoshi Kono and Akinori Sarai "Structure-based prediction of DNA target sites by regulatory proteins" Proteins: structure, function and genetics 35:114-131, 1999
    • (1999) Proteins: Structure, function and genetics , vol.35 , pp. 114-131
    • Kono, H.1    Sarai, A.2
  • 12
    • 0029987862 scopus 로고    scopus 로고
    • Energy functions that discriminate X-ray and near native folds from well-constructed decoys
    • Park B, Levitt M. "Energy functions that discriminate X-ray and near native folds from well-constructed decoys". J Mol Biol 258:367-392, 1996
    • (1996) J Mol Biol , vol.258 , pp. 367-392
    • Park, B.1    Levitt, M.2
  • 13
    • 0038708222 scopus 로고    scopus 로고
    • A novel approach to decoy set generation: Designing a physical energy function having local minima with native structure characteristics''
    • Keasar, C. and Levitt, M. "A novel approach to decoy set generation: Designing a physical energy function having local minima with native structure characteristics''. J. Mol. Biol. 329:159-174, 2003.
    • (2003) J. Mol. Biol , vol.329 , pp. 159-174
    • Keasar, C.1    Levitt, M.2
  • 14
    • 0034733381 scopus 로고    scopus 로고
    • Ab initio construction of protein tertiary structures using a hierarchical approach
    • Xia Y., Huang E.S., Levitt M., and Samudrala R. "Ab initio construction of protein tertiary structures using a hierarchical approach" J. Mol. Biol. 300:171-185, 2000
    • (2000) J. Mol. Biol , vol.300 , pp. 171-185
    • Xia, Y.1    Huang, E.S.2    Levitt, M.3    Samudrala, R.4
  • 15
    • 0031585984 scopus 로고    scopus 로고
    • Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions
    • Simons KT, Kooperberg C, Huang ES, Baker D. "Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions". J Mol Biol 268:209-225, 1997
    • (1997) J Mol Biol , vol.268 , pp. 209-225
    • Simons, K.T.1    Kooperberg, C.2    Huang, E.S.3    Baker, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.